Wall clock time and date at job start Wed Apr 1 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.69693 * 2 1 4 4 C 1.53193 * 109.58312 * 239.64731 * 2 1 3 5 5 H 1.09004 * 109.49893 * 65.59677 * 4 2 1 6 6 N 1.46498 * 109.50098 * 305.52478 * 4 2 1 7 7 C 1.34774 * 120.00328 * 155.06884 * 6 4 2 8 8 O 1.21690 * 119.99541 * 359.97438 * 7 6 4 9 9 C 1.46718 * 120.00228 * 180.02562 * 7 6 4 10 10 O 1.35343 * 126.64554 * 359.96735 * 9 7 6 11 11 C 1.33663 * 107.68511 * 180.02562 * 10 9 7 12 12 N 1.30614 * 109.15485 * 0.02562 * 11 10 9 13 13 C 1.33688 * 108.99677 * 359.97438 * 12 11 10 14 14 C 1.50696 * 126.27225 * 180.02562 * 13 12 11 15 15 F 1.39901 * 109.46923 * 269.97106 * 14 13 12 16 16 F 1.39894 * 109.47416 * 29.97377 * 14 13 12 17 17 F 1.39907 * 109.47129 * 149.97686 * 14 13 12 18 18 C 1.53044 * 109.33393 * 185.55938 * 4 2 1 19 19 C 1.53103 * 109.50499 * 61.34933 * 18 4 2 20 20 C 1.53191 * 109.32795 * 298.65690 * 19 18 4 21 21 N 1.46915 * 109.58660 * 120.35801 * 2 1 3 22 22 C 1.36934 * 120.63306 * 353.37323 * 21 2 1 23 23 H 1.07998 * 120.00348 * 29.05344 * 22 21 2 24 24 C 1.38818 * 119.99994 * 209.05525 * 22 21 2 25 25 N 1.31618 * 120.00158 * 15.05022 * 24 22 21 26 26 Si 1.86807 * 119.99811 * 195.05941 * 24 22 21 27 27 H 1.48502 * 109.46994 * 59.99743 * 26 24 22 28 28 H 1.48505 * 109.46997 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47035 * 299.99638 * 26 24 22 30 30 H 1.09002 * 109.46711 * 180.35274 * 1 2 3 31 31 H 1.09001 * 109.47012 * 300.35505 * 1 2 3 32 32 H 1.09003 * 109.46928 * 60.35673 * 1 2 3 33 33 H 0.97005 * 120.00040 * 335.06947 * 6 4 2 34 34 H 1.08004 * 125.41628 * 179.97438 * 11 10 9 35 35 H 1.09005 * 109.45756 * 181.40224 * 18 4 2 36 36 H 1.08998 * 109.46285 * 301.35825 * 18 4 2 37 37 H 1.08998 * 109.48918 * 178.69874 * 19 18 4 38 38 H 1.09001 * 109.51332 * 58.62663 * 19 18 4 39 39 H 1.09006 * 109.58659 * 294.84589 * 20 19 18 40 40 H 1.09004 * 109.70312 * 174.49403 * 20 19 18 41 41 H 0.97005 * 119.99834 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 1 1.7655 -0.1670 -2.1369 6 7 1.4515 -2.0679 -1.3072 7 6 1.3296 -2.6969 -2.4929 8 8 1.7111 -2.1527 -3.5123 9 6 0.7362 -4.0373 -2.5548 10 8 0.2697 -4.7631 -1.5121 11 6 -0.1853 -5.9230 -1.9960 12 7 -0.0182 -5.9421 -3.2913 13 6 0.5486 -4.7933 -3.6738 14 6 0.9132 -4.4051 -5.0836 15 9 2.2207 -4.8201 -5.3582 16 9 0.0313 -5.0192 -5.9793 17 9 0.8261 -3.0157 -5.2220 18 6 3.5676 -0.8479 -1.1710 19 6 3.9570 -1.6656 0.0633 20 6 3.4651 -0.9469 1.3236 21 7 2.0226 -0.6995 1.1943 22 6 1.1538 -1.1127 2.1688 23 1 0.1361 -1.3675 1.9124 24 6 1.5812 -1.2041 3.4864 25 7 2.7040 -0.6250 3.8558 26 14 0.5629 -2.1492 4.7352 27 1 0.4345 -3.5634 4.3007 28 1 1.2317 -2.0976 6.0601 29 1 -0.7868 -1.5382 4.8374 30 1 -0.3633 -1.0277 0.0063 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8932 33 1 1.1470 -2.5016 -0.4947 34 1 -0.6209 -6.7183 -1.4092 35 1 3.9374 -1.3445 -2.0681 36 1 4.0062 0.1475 -1.1002 37 1 5.0413 -1.7695 0.1035 38 1 3.4988 -2.6530 0.0054 39 1 3.9904 0.0021 1.4316 40 1 3.6521 -1.5696 2.1985 41 1 3.0024 -0.6886 4.7766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993628492.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:29 Heat of formation + Delta-G solvation = -129.424993 kcal Electronic energy + Delta-G solvation = -32533.929128 eV Core-core repulsion = 27615.947130 eV Total energy + Delta-G solvation = -4917.981998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.11813 -47.68058 -47.54096 -43.97406 -39.93512 -37.80329 -35.69170 -34.14533 -32.61672 -31.97563 -31.37453 -29.54423 -27.08251 -26.27592 -25.13616 -24.29604 -22.76856 -21.97400 -21.12456 -20.74118 -19.22894 -18.88944 -18.58576 -18.27975 -17.89968 -17.20596 -16.57656 -16.18585 -15.62684 -15.14968 -14.94677 -14.75328 -14.54944 -14.30779 -14.20318 -14.01673 -13.98684 -13.76040 -13.68967 -13.46077 -13.22943 -13.14254 -12.68433 -12.52191 -12.09591 -11.97712 -11.41860 -11.38561 -11.35314 -11.05752 -10.81574 -10.75038 -10.64319 -10.26016 -10.18051 -10.11208 -9.80195 -9.71161 -9.43547 -8.81192 -8.57549 -6.79411 -5.90625 -3.36691 0.26805 1.80222 1.88808 2.42017 2.87669 3.11312 3.27923 3.34091 3.34725 3.35622 3.68355 4.25711 4.30590 4.36196 4.58466 4.84465 4.97293 5.17678 5.22374 5.41395 5.45136 5.46661 5.60309 5.82353 5.97194 6.09095 6.15793 6.27999 6.40348 6.45079 6.55733 6.65137 6.76538 6.81343 6.88355 6.92024 7.27832 7.56366 7.57638 7.68198 8.07977 8.31970 9.07929 9.70565 10.27031 11.17149 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015507 B = 0.003695 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.259327 B = 7575.013334 C = 8487.295518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.159 3.841 3 H 0.045 0.955 4 C 0.131 3.869 5 H 0.084 0.916 6 N -0.675 5.675 7 C 0.584 3.416 8 O -0.502 6.502 9 C -0.014 4.014 10 O -0.169 6.169 11 C 0.211 3.789 12 N -0.461 5.461 13 C -0.043 4.043 14 C 0.553 3.447 15 F -0.168 7.168 16 F -0.169 7.169 17 F -0.138 7.138 18 C -0.122 4.122 19 C -0.141 4.141 20 C 0.170 3.830 21 N -0.586 5.586 22 C -0.260 4.260 23 H 0.070 0.930 24 C 0.008 3.992 25 N -0.899 5.899 26 Si 0.901 3.099 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.415 0.585 34 H 0.268 0.732 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.019 0.981 40 H 0.089 0.911 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 -7.568 -11.769 14.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.051 3.949 3 H 0.063 0.937 4 C 0.026 3.974 5 H 0.102 0.898 6 N -0.325 5.325 7 C 0.366 3.634 8 O -0.379 6.379 9 C -0.073 4.073 10 O -0.053 6.053 11 C -0.015 4.015 12 N -0.188 5.188 13 C -0.168 4.168 14 C 0.498 3.502 15 F -0.149 7.149 16 F -0.150 7.150 17 F -0.119 7.119 18 C -0.161 4.161 19 C -0.181 4.181 20 C 0.044 3.956 21 N -0.310 5.310 22 C -0.389 4.389 23 H 0.088 0.912 24 C -0.191 4.191 25 N -0.542 5.542 26 Si 0.730 3.270 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.253 0.747 34 H 0.283 0.717 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.037 0.963 40 H 0.107 0.893 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.578 -7.606 -12.628 15.170 hybrid contribution -0.425 -0.409 1.507 1.618 sum -4.003 -8.016 -11.121 14.281 Atomic orbital electron populations 1.21804 0.95510 1.01438 1.00731 1.20735 0.93443 0.94072 0.86622 0.93749 1.21785 0.93294 0.81683 1.00665 0.89803 1.45981 1.59464 1.18877 1.08222 1.16438 0.80047 0.81423 0.85528 1.90992 1.49490 1.63849 1.33561 1.23457 1.02919 0.95767 0.85137 1.84680 1.57884 1.26572 1.36166 1.28491 0.96297 0.87518 0.89182 1.70154 1.16089 1.20273 1.12285 1.21659 1.06704 0.93590 0.94820 1.16707 0.74850 0.76026 0.82628 1.93236 1.37193 1.90234 1.94274 1.93218 1.68816 1.83149 1.69855 1.93407 1.95713 1.26995 1.95803 1.21806 0.94848 1.00951 0.98471 1.22168 0.99203 0.99410 0.97296 1.20836 0.83030 0.97328 0.94362 1.44183 1.03198 1.64809 1.18825 1.19096 0.94826 1.38681 0.86327 0.91219 1.25094 0.97672 0.99382 0.96976 1.70001 1.23186 1.43978 1.17057 0.86412 0.79695 0.80063 0.80789 1.21025 1.21656 1.20871 0.92931 0.91543 0.94000 0.74702 0.71667 0.92845 0.91357 0.93187 0.93036 0.96252 0.89306 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 7.72 37.16 0.29 -2.02 16 2 C 0.16 2.90 3.20 -67.60 -0.22 2.68 16 3 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 4 C 0.13 2.14 2.32 -67.81 -0.16 1.98 16 5 H 0.08 1.34 7.58 -51.93 -0.39 0.94 16 6 N -0.68 -10.59 3.46 -54.98 -0.19 -10.78 16 7 C 0.58 9.15 7.70 -12.84 -0.10 9.05 16 8 O -0.50 -8.78 12.80 5.20 0.07 -8.71 16 9 C -0.01 -0.19 7.14 -36.84 -0.26 -0.45 16 10 O -0.17 -1.98 10.57 4.43 0.05 -1.94 16 11 C 0.21 1.89 13.21 52.24 0.69 2.58 16 12 N -0.46 -5.67 11.21 -10.89 -0.12 -5.79 16 13 C -0.04 -0.60 6.49 -82.47 -0.54 -1.14 16 14 C 0.55 7.98 3.34 36.00 0.12 8.10 16 15 F -0.17 -2.46 17.30 2.25 0.04 -2.42 16 16 F -0.17 -2.33 17.27 2.25 0.04 -2.29 16 17 F -0.14 -2.16 13.47 2.25 0.03 -2.13 16 18 C -0.12 -2.00 5.58 -26.66 -0.15 -2.15 16 19 C -0.14 -2.52 5.93 -26.58 -0.16 -2.68 16 20 C 0.17 3.67 5.29 -3.71 -0.02 3.65 16 21 N -0.59 -12.70 2.65 -164.77 -0.44 -13.13 16 22 C -0.26 -6.20 8.61 -15.06 -0.13 -6.33 16 23 H 0.07 1.61 6.20 -52.49 -0.33 1.28 16 24 C 0.01 0.21 4.96 -17.43 -0.09 0.12 16 25 N -0.90 -24.16 11.14 55.49 0.62 -23.54 16 26 Si 0.90 20.00 29.58 -169.99 -5.03 14.97 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 30 H 0.05 0.87 6.38 -51.93 -0.33 0.54 16 31 H 0.07 1.21 7.66 -51.93 -0.40 0.82 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.42 6.74 7.57 -40.82 -0.31 6.44 16 34 H 0.27 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.93 7.53 -51.93 -0.39 0.54 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.09 2.18 6.06 -51.93 -0.31 1.87 16 41 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 346.46 15.07 5.22 5.22 Total: -1.00 -28.69 346.46 -4.99 -33.68 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.56 Total: 3.46 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: -0.72 Total: 13.42 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.13 Total: -53.25 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.11 Total: -10.65 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.11 Total: -6.84 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.69 -4.99 -33.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993628492.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.749 kcal (2) G-P(sol) polarization free energy of solvation -28.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds