Wall clock time and date at job start Wed Apr 1 2020 06:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.49889 * 2 1 4 4 C 1.53192 * 109.49913 * 120.06974 * 2 1 3 5 5 N 1.46922 * 108.77901 * 174.58519 * 4 2 1 6 6 C 1.34775 * 120.63361 * 126.41091 * 5 4 2 7 7 O 1.21575 * 120.00575 * 174.90807 * 6 5 4 8 8 C 1.47516 * 119.99741 * 354.90630 * 6 5 4 9 9 C 1.36828 * 126.94251 * 186.27623 * 8 6 5 10 10 C 1.41266 * 103.84467 * 179.97438 * 9 8 6 11 11 C 1.50697 * 126.70283 * 179.97438 * 10 9 8 12 12 F 1.39902 * 109.47048 * 90.00584 * 11 10 9 13 13 F 1.39901 * 109.46929 * 210.00029 * 11 10 9 14 14 F 1.39894 * 109.47206 * 330.00589 * 11 10 9 15 15 N 1.30127 * 106.59187 * 0.02562 * 10 9 8 16 16 O 1.20897 * 111.98073 * 359.69230 * 15 10 9 17 17 C 1.46927 * 118.73892 * 306.38621 * 5 4 2 18 18 C 1.53197 * 108.77168 * 53.61260 * 17 5 4 19 19 C 1.53046 * 109.33707 * 305.34288 * 18 17 5 20 20 H 1.08997 * 109.46047 * 181.40118 * 19 18 17 21 21 N 1.46501 * 109.46342 * 301.36759 * 19 18 17 22 22 C 1.36937 * 119.99708 * 274.99747 * 21 19 18 23 23 H 1.08009 * 120.00028 * 0.02562 * 22 21 19 24 24 C 1.38806 * 120.00032 * 179.97438 * 22 21 19 25 25 N 1.31621 * 120.00208 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00152 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47066 * 90.00276 * 26 24 22 28 28 H 1.48496 * 109.47232 * 210.00160 * 26 24 22 29 29 H 1.48498 * 109.47336 * 330.00455 * 26 24 22 30 30 H 1.09003 * 109.47198 * 299.93326 * 1 2 3 31 31 H 1.09004 * 109.47364 * 59.93072 * 1 2 3 32 32 H 1.09004 * 109.47559 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.58785 * 54.79274 * 4 2 1 34 34 H 1.09007 * 109.70193 * 294.44442 * 4 2 1 35 35 H 1.07991 * 128.07795 * 0.02562 * 9 8 6 36 36 H 1.08999 * 109.58865 * 293.82520 * 17 5 4 37 37 H 1.08999 * 109.58838 * 173.39193 * 17 5 4 38 38 H 1.08992 * 109.50125 * 65.31649 * 18 17 5 39 39 H 1.09005 * 109.49428 * 185.38321 * 18 17 5 40 40 H 0.96993 * 120.00096 * 94.99486 * 21 19 18 41 41 H 0.96993 * 120.00296 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 1.2497 5 7 3.5045 -0.8289 1.1698 6 6 4.2811 -0.3860 2.1783 7 8 5.4835 -0.5620 2.1423 8 6 3.6721 0.3125 3.3260 9 6 4.3284 0.9218 4.3605 10 6 3.2873 1.4262 5.1712 11 6 3.4399 2.1951 6.4582 12 9 3.5069 3.5641 6.1784 13 9 2.3408 1.9416 7.2859 14 9 4.6134 1.7933 7.1051 15 7 2.1707 1.0961 4.5900 16 8 2.3581 0.4842 3.5644 17 6 4.1052 -1.4269 -0.0304 18 6 3.5708 -0.6954 -1.2658 19 6 2.0407 -0.7235 -1.2490 20 1 1.6586 -0.2252 -2.1399 21 7 1.5782 -2.1135 -1.2311 22 6 1.4473 -2.8066 -2.4047 23 1 1.6854 -2.3288 -3.3436 24 6 1.0095 -4.1238 -2.3878 25 7 0.7198 -4.7063 -1.2436 26 14 0.8302 -5.0692 -3.9889 27 1 2.1076 -5.7586 -4.3023 28 1 -0.2540 -6.0744 -3.8514 29 1 0.4947 -4.1261 -5.0857 30 1 -0.3634 0.5128 0.8906 31 1 -0.3634 0.5149 -0.8894 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6052 -1.7213 1.2984 34 1 1.7636 -0.1596 2.1403 35 1 5.3937 0.9997 4.5196 36 1 3.8374 -2.4820 -0.0861 37 1 5.1895 -1.3248 0.0140 38 1 3.9159 0.3384 -1.2542 39 1 3.9338 -1.1901 -2.1668 40 1 1.3647 -2.5427 -0.3879 41 1 0.4135 -5.6266 -1.2318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036077599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:07 Heat of formation + Delta-G solvation = -91.442953 kcal Electronic energy + Delta-G solvation = -31390.999406 eV Core-core repulsion = 26474.664432 eV Total energy + Delta-G solvation = -4916.334973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.66166 -48.18958 -48.14774 -45.76460 -40.24349 -38.04713 -35.28751 -34.38070 -32.88818 -32.77173 -31.47883 -29.36636 -27.76593 -26.39558 -25.81280 -24.21713 -23.60691 -22.96432 -21.86264 -20.84996 -19.22354 -19.16692 -18.82083 -18.24800 -18.19125 -17.57987 -17.27655 -16.39319 -16.08581 -15.31013 -15.03135 -14.96005 -14.73228 -14.56813 -14.53519 -14.38092 -14.28089 -14.26331 -14.00148 -13.73319 -13.37679 -13.22080 -13.01680 -12.63519 -12.43467 -12.22520 -11.75402 -11.51744 -11.42040 -11.24040 -10.95666 -10.86411 -10.65821 -10.53692 -10.40685 -10.29460 -10.21233 -9.94251 -9.64020 -9.00164 -8.54296 -7.05433 -5.85346 -3.14247 0.29927 1.06939 1.73662 2.11337 2.72965 2.85310 2.90693 3.29440 3.38332 3.44437 3.45719 3.79961 4.03042 4.15528 4.27902 4.52307 4.54464 4.97742 5.14860 5.17733 5.27187 5.46229 5.55448 5.62562 5.64638 5.77018 5.84348 5.96849 6.12016 6.18551 6.28818 6.36305 6.39686 6.61651 6.65809 6.80878 6.83596 7.16740 7.36270 7.63477 7.82113 8.32972 9.44948 9.99610 10.34443 11.36954 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.022602 B = 0.002564 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.509126 B =10917.604523 C =11252.917611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 H 0.068 0.932 4 C 0.098 3.902 5 N -0.579 5.579 6 C 0.596 3.404 7 O -0.516 6.516 8 C -0.055 4.055 9 C -0.119 4.119 10 C -0.086 4.086 11 C 0.561 3.439 12 F -0.163 7.163 13 F -0.162 7.162 14 F -0.160 7.160 15 N -0.295 5.295 16 O 0.153 5.847 17 C 0.120 3.880 18 C -0.151 4.151 19 C 0.178 3.822 20 H 0.055 0.945 21 N -0.719 5.719 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.010 4.010 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.197 0.803 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.383 0.617 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.286 14.249 12.571 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.128 4.128 3 H 0.087 0.913 4 C -0.024 4.024 5 N -0.310 5.310 6 C 0.379 3.621 7 O -0.393 6.393 8 C -0.120 4.120 9 C -0.141 4.141 10 C -0.244 4.244 11 C 0.506 3.494 12 F -0.145 7.145 13 F -0.144 7.144 14 F -0.141 7.141 15 N 0.011 4.989 16 O 0.072 5.928 17 C -0.001 4.001 18 C -0.192 4.192 19 C 0.067 3.933 20 H 0.073 0.927 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.215 0.785 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.218 0.782 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.617 14.315 12.744 19.714 hybrid contribution 0.533 -0.649 -0.389 0.925 sum 5.150 13.666 12.355 19.129 Atomic orbital electron populations 1.21687 0.93769 1.03478 1.00741 1.21729 0.96903 0.98845 0.95284 0.91322 1.22390 0.78087 1.02858 0.99105 1.48135 1.07646 1.57434 1.17749 1.16565 0.85931 0.79231 0.80330 1.90870 1.12981 1.57810 1.77654 1.24586 0.82691 1.04509 1.00259 1.22647 1.02103 0.97791 0.91595 1.23369 0.91844 1.08549 1.00673 1.16591 0.74545 0.76917 0.81379 1.93276 1.96007 1.31611 1.93560 1.93270 1.53683 1.93856 1.73545 1.93259 1.48022 1.90448 1.82408 1.73811 1.22850 1.06255 0.95963 1.85275 1.25394 1.52589 1.29498 1.21788 0.97868 0.98668 0.81771 1.22568 1.00288 0.98867 0.97440 1.20256 0.90836 0.87428 0.94775 0.92742 1.42466 1.79015 1.07648 1.06993 1.19199 1.37411 0.93882 0.86532 0.91185 1.24703 1.02115 0.97179 0.96643 1.69633 1.51564 1.13108 1.23695 0.86233 0.77308 0.79825 0.83044 1.21787 1.21873 1.20833 0.93577 0.92524 0.90818 0.89104 0.89211 0.78547 0.89071 0.89814 0.93125 0.90261 0.78152 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.05 37.15 0.34 -1.61 16 2 C -0.11 -1.51 2.67 -90.46 -0.24 -1.75 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.10 1.36 5.33 -3.71 -0.02 1.34 16 5 N -0.58 -8.36 2.97 -174.01 -0.52 -8.88 16 6 C 0.60 8.43 7.69 -12.48 -0.10 8.34 16 7 O -0.52 -8.42 16.35 5.30 0.09 -8.33 16 8 C -0.06 -0.67 6.99 -36.31 -0.25 -0.92 16 9 C -0.12 -1.23 10.65 -38.94 -0.41 -1.64 16 10 C -0.09 -0.94 6.63 -82.17 -0.54 -1.48 16 11 C 0.56 5.48 3.56 36.00 0.13 5.61 16 12 F -0.16 -1.59 17.30 2.25 0.04 -1.55 16 13 F -0.16 -1.71 17.27 2.25 0.04 -1.67 16 14 F -0.16 -1.45 17.08 2.25 0.04 -1.41 16 15 N -0.29 -3.56 12.00 33.52 0.40 -3.16 16 16 O 0.15 1.82 7.75 15.56 0.12 1.95 16 17 C 0.12 1.88 6.16 -3.71 -0.02 1.86 16 18 C -0.15 -2.34 5.78 -26.61 -0.15 -2.49 16 19 C 0.18 3.01 2.54 -67.85 -0.17 2.84 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 21 N -0.72 -15.43 3.64 -53.34 -0.19 -15.62 16 22 C -0.24 -5.96 9.93 -15.06 -0.15 -6.11 16 23 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 25 N -0.93 -26.13 13.06 55.49 0.72 -25.40 16 26 Si 0.90 21.23 29.55 -169.99 -5.02 16.21 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.22 7.53 -51.93 -0.39 0.83 16 33 H 0.09 1.42 6.64 -51.93 -0.34 1.07 16 34 H 0.09 1.10 3.81 -54.78 -0.21 0.89 16 35 H 0.20 1.61 8.06 -52.49 -0.42 1.18 16 36 H 0.09 1.66 7.74 -51.93 -0.40 1.26 16 37 H 0.08 1.28 7.04 -51.93 -0.37 0.92 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.38 8.76 5.93 -40.82 -0.24 8.52 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -27.67 352.43 -5.13 -32.80 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.46 Total: 6.18 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -1.70 Total: 3.60 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.42 Total: -53.07 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: 0.21 Total: -6.39 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.12 Total: -4.64 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.67 -5.13 -32.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036077599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.643 kcal (2) G-P(sol) polarization free energy of solvation -27.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds