Wall clock time and date at job start Wed Apr 1 2020 06:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.52778 * 2 1 4 4 C 1.53194 * 109.49762 * 239.91674 * 2 1 3 5 5 N 1.46919 * 108.77904 * 185.41132 * 4 2 1 6 6 C 1.34768 * 120.63574 * 233.59205 * 5 4 2 7 7 O 1.21583 * 120.00035 * 6.98706 * 6 5 4 8 8 C 1.47513 * 120.00166 * 186.99392 * 6 5 4 9 9 C 1.36825 * 126.94433 * 187.19208 * 8 6 5 10 10 C 1.41259 * 103.85070 * 180.27908 * 9 8 6 11 11 C 1.50702 * 126.70987 * 179.71799 * 10 9 8 12 12 F 1.39896 * 109.46698 * 90.00381 * 11 10 9 13 13 F 1.39901 * 109.46926 * 210.00260 * 11 10 9 14 14 F 1.39898 * 109.47009 * 330.00158 * 11 10 9 15 15 N 1.30133 * 106.58776 * 359.58349 * 10 9 8 16 16 O 1.20894 * 111.97844 * 0.45023 * 15 10 9 17 17 C 1.46930 * 118.73644 * 53.86482 * 5 4 2 18 18 C 1.53624 * 108.54362 * 306.09649 * 17 5 4 19 19 C 1.53037 * 109.24360 * 54.85002 * 18 17 5 20 20 H 1.09004 * 109.45985 * 58.53774 * 19 18 17 21 21 N 1.46500 * 109.46219 * 178.49024 * 19 18 17 22 22 C 1.36940 * 120.00348 * 275.07571 * 21 19 18 23 23 H 1.07993 * 119.99705 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00098 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99764 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99956 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47368 * 59.99888 * 26 24 22 28 28 H 1.48501 * 109.47231 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46913 * 299.99842 * 26 24 22 30 30 H 1.08997 * 109.47263 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46680 * 300.07858 * 1 2 3 32 32 H 1.08992 * 109.47418 * 60.07837 * 1 2 3 33 33 H 1.09005 * 109.58041 * 65.62895 * 4 2 1 34 34 H 1.08995 * 109.70502 * 305.27927 * 4 2 1 35 35 H 1.08003 * 128.07704 * 0.02562 * 9 8 6 36 36 H 1.08998 * 109.58568 * 65.92415 * 17 5 4 37 37 H 1.08999 * 109.58866 * 186.35220 * 17 5 4 38 38 H 1.09005 * 109.63131 * 294.86329 * 18 17 5 39 39 H 1.08998 * 109.46144 * 174.74250 * 18 17 5 40 40 H 0.97001 * 119.99563 * 95.07183 * 21 19 18 41 41 H 0.97000 * 119.99931 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5045 -0.8292 -1.1697 6 6 4.2810 -0.3865 -2.1783 7 8 3.7835 0.2193 -3.1077 8 6 5.7345 -0.6369 -2.1548 9 6 6.6687 -0.1406 -3.0226 10 6 7.8854 -0.6887 -2.5595 11 6 9.2536 -0.4760 -3.1546 12 9 9.8528 0.6390 -2.5590 13 9 10.0430 -1.6080 -2.9251 14 9 9.1348 -0.2617 -4.5319 15 7 7.5945 -1.4109 -1.5168 16 8 6.4100 -1.4005 -1.2753 17 6 4.1050 -1.4319 0.0282 18 6 3.5708 -0.6952 1.2660 19 6 2.0408 -0.7232 1.2483 20 1 1.6966 -1.7573 1.2353 21 7 1.5265 -0.0531 2.4453 22 6 1.3965 -0.7494 3.6173 23 1 1.6726 -1.7926 3.6590 24 6 0.9096 -0.1143 4.7515 25 7 0.5736 1.1572 4.7007 26 14 0.7316 -1.0643 6.3500 27 1 2.0592 -1.5804 6.7697 28 1 0.1939 -0.1655 7.4028 29 1 -0.2007 -2.2025 6.1481 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5151 0.8894 32 1 -0.3634 0.5126 -0.8906 33 1 1.7637 -0.1579 -2.1389 34 1 1.6053 -1.7215 -1.3006 35 1 6.5118 0.5139 -3.8673 36 1 3.8338 -2.4862 0.0819 37 1 5.1896 -1.3333 -0.0176 38 1 3.9159 0.3387 1.2540 39 1 3.9334 -1.1893 2.1673 40 1 1.2782 0.8838 2.4076 41 1 0.2330 1.6009 5.4932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036077603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:16 Heat of formation + Delta-G solvation = -96.621696 kcal Electronic energy + Delta-G solvation = -30816.614578 eV Core-core repulsion = 25900.055037 eV Total energy + Delta-G solvation = -4916.559541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.71028 -48.24018 -48.19416 -45.86231 -40.34987 -37.96313 -35.41855 -34.71216 -33.28346 -32.36417 -31.60004 -29.46475 -27.81550 -26.98781 -25.43068 -24.08694 -23.58757 -22.56699 -21.81627 -21.15094 -19.72848 -19.24066 -18.97471 -18.48826 -18.29199 -17.52804 -17.16364 -16.57835 -16.23213 -15.32152 -15.09233 -15.05136 -15.00567 -14.61737 -14.54556 -14.33364 -14.32759 -14.27971 -13.94267 -13.79435 -13.40462 -13.30868 -13.08632 -12.58188 -12.54974 -12.30545 -11.85046 -11.71953 -11.44961 -11.29335 -10.99493 -10.88752 -10.78608 -10.54575 -10.46145 -10.38818 -10.28125 -9.82787 -9.71233 -8.97360 -8.79562 -7.03709 -5.83115 -3.12413 0.19388 0.98099 1.67651 2.01032 2.55581 2.73247 2.84420 3.20336 3.39402 3.44448 3.45352 3.74864 3.94324 4.08993 4.18555 4.45478 4.52277 4.95620 5.05810 5.10266 5.11453 5.21891 5.41353 5.52940 5.57419 5.63038 5.77794 5.94276 6.02961 6.17182 6.20055 6.33684 6.35138 6.48320 6.70299 6.81291 6.94020 6.99769 7.21249 7.62967 7.65062 8.34882 9.46532 10.02704 10.37317 11.39131 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016784 B = 0.002464 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.834413 B =11359.828096 C =12462.862487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 H 0.072 0.928 4 C 0.120 3.880 5 N -0.587 5.587 6 C 0.600 3.400 7 O -0.513 6.513 8 C -0.059 4.059 9 C -0.115 4.115 10 C -0.087 4.087 11 C 0.561 3.439 12 F -0.162 7.162 13 F -0.162 7.162 14 F -0.160 7.160 15 N -0.293 5.293 16 O 0.156 5.844 17 C 0.096 3.904 18 C -0.151 4.151 19 C 0.183 3.817 20 H 0.051 0.949 21 N -0.719 5.719 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.198 0.802 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.384 0.616 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.678 -4.281 -17.952 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.091 0.909 4 C -0.002 4.002 5 N -0.318 5.318 6 C 0.384 3.616 7 O -0.389 6.389 8 C -0.124 4.124 9 C -0.138 4.138 10 C -0.245 4.245 11 C 0.506 3.494 12 F -0.143 7.143 13 F -0.144 7.144 14 F -0.141 7.141 15 N 0.015 4.985 16 O 0.073 5.927 17 C -0.027 4.027 18 C -0.192 4.192 19 C 0.072 3.928 20 H 0.069 0.931 21 N -0.360 5.360 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.215 0.785 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.218 0.782 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.196 -4.795 -17.474 22.416 hybrid contribution -0.006 0.317 0.448 0.549 sum 13.190 -4.479 -17.026 21.999 Atomic orbital electron populations 1.21658 0.93749 1.01935 1.02052 1.21765 0.96865 1.00175 0.94283 0.90940 1.21916 0.76542 1.01635 1.00070 1.48133 1.07861 1.58296 1.17466 1.16525 0.81529 0.80113 0.83417 1.90881 1.71702 1.40869 1.35477 1.24460 0.96024 0.98751 0.93142 1.22668 0.87834 1.01480 1.01819 1.23393 0.96406 1.05290 0.99373 1.16582 0.82123 0.74780 0.75952 1.93285 1.84644 1.52858 1.83538 1.93270 1.75798 1.51020 1.94268 1.93261 1.96005 1.94637 1.30220 1.73820 0.96038 1.15099 1.13565 1.85262 1.12472 1.51862 1.43154 1.22421 0.97839 0.98068 0.84403 1.22805 1.00485 1.00429 0.95527 1.20213 0.90189 0.95877 0.86492 0.93147 1.42389 1.76410 1.11454 1.05710 1.19160 1.36294 0.94110 0.87673 0.91214 1.24732 1.01911 0.95999 0.98069 1.69643 1.49742 1.09474 1.29085 0.86300 0.77777 0.78728 0.83548 1.21269 1.21747 1.21270 0.92914 0.90575 0.93688 0.88820 0.90566 0.78455 0.90225 0.89560 0.91990 0.90033 0.78159 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.02 37.16 0.34 -1.65 16 2 C -0.11 -1.62 2.46 -90.50 -0.22 -1.84 16 3 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.12 1.46 5.72 -3.71 -0.02 1.44 16 5 N -0.59 -7.12 2.97 -173.75 -0.52 -7.64 16 6 C 0.60 7.46 7.68 -12.48 -0.10 7.36 16 7 O -0.51 -7.47 16.35 5.29 0.09 -7.39 16 8 C -0.06 -0.63 6.90 -36.31 -0.25 -0.88 16 9 C -0.12 -1.09 10.65 -38.95 -0.41 -1.51 16 10 C -0.09 -0.88 6.63 -82.16 -0.54 -1.43 16 11 C 0.56 5.21 3.56 36.01 0.13 5.34 16 12 F -0.16 -1.57 17.30 2.25 0.04 -1.53 16 13 F -0.16 -1.62 17.27 2.25 0.04 -1.58 16 14 F -0.16 -1.35 17.08 2.25 0.04 -1.32 16 15 N -0.29 -3.32 12.00 33.52 0.40 -2.92 16 16 O 0.16 1.68 7.93 15.57 0.12 1.80 16 17 C 0.10 1.12 6.18 -3.48 -0.02 1.10 16 18 C -0.15 -2.31 5.67 -26.39 -0.15 -2.46 16 19 C 0.18 3.15 2.19 -67.89 -0.15 3.00 16 20 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 21 N -0.72 -16.31 4.41 -53.39 -0.24 -16.55 16 22 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -26.94 13.06 55.49 0.72 -26.21 16 26 Si 0.91 21.50 29.55 -169.99 -5.02 16.47 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 29 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.34 7.36 -51.92 -0.38 0.96 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.15 7.00 -51.93 -0.36 0.78 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.20 1.45 8.06 -52.48 -0.42 1.02 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.93 4.26 -52.61 -0.22 0.71 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.38 9.48 7.50 -40.82 -0.31 9.17 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 356.72 15.07 5.38 5.38 Total: -1.00 -28.93 356.72 -5.22 -34.15 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -4.62 Total: 5.60 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.65 Total: 1.73 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.38 Total: -53.32 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: 0.21 Total: -5.58 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.12 Total: -4.43 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.93 -5.22 -34.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036077603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.473 kcal (2) G-P(sol) polarization free energy of solvation -28.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds