Wall clock time and date at job start Wed Apr 1 2020 06:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.52778 * 2 1 4 4 C 1.53194 * 109.49762 * 239.91674 * 2 1 3 5 5 N 1.46919 * 108.77904 * 185.41132 * 4 2 1 6 6 C 1.34768 * 120.63574 * 233.59205 * 5 4 2 7 7 O 1.21583 * 120.00035 * 6.98706 * 6 5 4 8 8 C 1.47513 * 120.00166 * 186.99392 * 6 5 4 9 9 C 1.36825 * 126.94433 * 187.19208 * 8 6 5 10 10 C 1.41259 * 103.85070 * 180.27908 * 9 8 6 11 11 C 1.50702 * 126.70987 * 179.71799 * 10 9 8 12 12 F 1.39896 * 109.46698 * 90.00381 * 11 10 9 13 13 F 1.39901 * 109.46926 * 210.00260 * 11 10 9 14 14 F 1.39898 * 109.47009 * 330.00158 * 11 10 9 15 15 N 1.30133 * 106.58776 * 359.58349 * 10 9 8 16 16 O 1.20894 * 111.97844 * 0.45023 * 15 10 9 17 17 C 1.46930 * 118.73644 * 53.86482 * 5 4 2 18 18 C 1.53624 * 108.54362 * 306.09649 * 17 5 4 19 19 C 1.53037 * 109.24360 * 54.85002 * 18 17 5 20 20 H 1.09004 * 109.45985 * 58.53774 * 19 18 17 21 21 N 1.46500 * 109.46219 * 178.49024 * 19 18 17 22 22 C 1.36940 * 120.00348 * 275.07571 * 21 19 18 23 23 H 1.07993 * 119.99705 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00098 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99764 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99956 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47368 * 59.99888 * 26 24 22 28 28 H 1.48501 * 109.47231 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46913 * 299.99842 * 26 24 22 30 30 H 1.08997 * 109.47263 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46680 * 300.07858 * 1 2 3 32 32 H 1.08992 * 109.47418 * 60.07837 * 1 2 3 33 33 H 1.09005 * 109.58041 * 65.62895 * 4 2 1 34 34 H 1.08995 * 109.70502 * 305.27927 * 4 2 1 35 35 H 1.08003 * 128.07704 * 0.02562 * 9 8 6 36 36 H 1.08998 * 109.58568 * 65.92415 * 17 5 4 37 37 H 1.08999 * 109.58866 * 186.35220 * 17 5 4 38 38 H 1.09005 * 109.63131 * 294.86329 * 18 17 5 39 39 H 1.08998 * 109.46144 * 174.74250 * 18 17 5 40 40 H 0.97001 * 119.99563 * 95.07183 * 21 19 18 41 41 H 0.97000 * 119.99931 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5045 -0.8292 -1.1697 6 6 4.2810 -0.3865 -2.1783 7 8 3.7835 0.2193 -3.1077 8 6 5.7345 -0.6369 -2.1548 9 6 6.6687 -0.1406 -3.0226 10 6 7.8854 -0.6887 -2.5595 11 6 9.2536 -0.4760 -3.1546 12 9 9.8528 0.6390 -2.5590 13 9 10.0430 -1.6080 -2.9251 14 9 9.1348 -0.2617 -4.5319 15 7 7.5945 -1.4109 -1.5168 16 8 6.4100 -1.4005 -1.2753 17 6 4.1050 -1.4319 0.0282 18 6 3.5708 -0.6952 1.2660 19 6 2.0408 -0.7232 1.2483 20 1 1.6966 -1.7573 1.2353 21 7 1.5265 -0.0531 2.4453 22 6 1.3965 -0.7494 3.6173 23 1 1.6726 -1.7926 3.6590 24 6 0.9096 -0.1143 4.7515 25 7 0.5736 1.1572 4.7007 26 14 0.7316 -1.0643 6.3500 27 1 2.0592 -1.5804 6.7697 28 1 0.1939 -0.1655 7.4028 29 1 -0.2007 -2.2025 6.1481 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5151 0.8894 32 1 -0.3634 0.5126 -0.8906 33 1 1.7637 -0.1579 -2.1389 34 1 1.6053 -1.7215 -1.3006 35 1 6.5118 0.5139 -3.8673 36 1 3.8338 -2.4862 0.0819 37 1 5.1896 -1.3333 -0.0176 38 1 3.9159 0.3387 1.2540 39 1 3.9334 -1.1893 2.1673 40 1 1.2782 0.8838 2.4076 41 1 0.2330 1.6009 5.4932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036077603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:15 Heat of formation + Delta-G solvation = -113.673896 kcal Electronic energy + Delta-G solvation = -30817.354017 eV Core-core repulsion = 25900.055037 eV Total energy + Delta-G solvation = -4917.298979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.44699 -48.95823 -48.94887 -46.69198 -41.39349 -39.16586 -36.49628 -35.86936 -34.63096 -33.46917 -32.96780 -31.07666 -28.59602 -28.04166 -26.89305 -25.24979 -24.66724 -23.69209 -23.10529 -22.06128 -20.97417 -20.01043 -19.74958 -19.41359 -19.12919 -19.00932 -18.34744 -17.60849 -17.16968 -16.72274 -16.36401 -15.80228 -15.75463 -15.70321 -15.49880 -15.34994 -15.31803 -15.14794 -15.06435 -15.03945 -14.76902 -14.43290 -14.02441 -13.88279 -13.67380 -13.29666 -13.13060 -12.89051 -12.80164 -12.73365 -12.45872 -12.29746 -12.18710 -12.03842 -11.81053 -11.69297 -11.50463 -11.24283 -11.12721 -10.82944 -9.85299 -8.94117 -7.88977 -5.16013 -0.65248 0.18971 0.89888 1.14951 1.50785 1.52134 1.57890 1.61434 1.83161 2.09054 2.40816 2.60075 3.01033 3.10860 3.30018 3.34470 3.44915 3.66249 3.80046 3.84930 3.98719 4.10415 4.31806 4.39129 4.40687 4.50153 4.69767 4.77502 4.82543 4.84345 4.95610 5.04212 5.19040 5.28378 5.42232 5.51304 5.58398 5.63770 6.01567 6.32766 6.35708 6.68874 7.39645 8.16561 8.38431 9.34373 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016784 B = 0.002464 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.834413 B =11359.828096 C =12462.862487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 H 0.056 0.944 4 C 0.127 3.873 5 N -0.588 5.588 6 C 0.606 3.394 7 O -0.535 6.535 8 C -0.069 4.069 9 C -0.100 4.100 10 C -0.089 4.089 11 C 0.567 3.433 12 F -0.164 7.164 13 F -0.166 7.166 14 F -0.153 7.153 15 N -0.306 5.306 16 O 0.158 5.842 17 C 0.107 3.893 18 C -0.143 4.143 19 C 0.177 3.823 20 H 0.055 0.945 21 N -0.731 5.731 22 C -0.229 4.229 23 H 0.079 0.921 24 C -0.077 4.077 25 N -0.971 5.971 26 Si 0.965 3.035 27 H -0.279 1.279 28 H -0.302 1.302 29 H -0.278 1.278 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.220 0.780 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.371 0.629 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.614 -5.802 -19.569 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.122 4.122 3 H 0.074 0.926 4 C 0.005 3.995 5 N -0.318 5.318 6 C 0.391 3.609 7 O -0.413 6.413 8 C -0.134 4.134 9 C -0.122 4.122 10 C -0.246 4.246 11 C 0.511 3.489 12 F -0.145 7.145 13 F -0.148 7.148 14 F -0.134 7.134 15 N 0.002 4.998 16 O 0.074 5.926 17 C -0.016 4.016 18 C -0.184 4.184 19 C 0.069 3.931 20 H 0.073 0.927 21 N -0.370 5.370 22 C -0.361 4.361 23 H 0.097 0.903 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.795 3.205 27 H -0.206 1.206 28 H -0.229 1.229 29 H -0.205 1.205 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.236 0.764 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.202 0.798 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.169 -6.366 -19.129 24.642 hybrid contribution -0.240 0.779 0.854 1.181 sum 13.928 -5.587 -18.275 23.647 Atomic orbital electron populations 1.21575 0.93666 1.02239 1.01338 1.21630 0.96888 0.99305 0.94357 0.92569 1.21854 0.76677 1.02527 0.98406 1.48139 1.07886 1.58267 1.17555 1.16561 0.81972 0.79370 0.82993 1.90874 1.72334 1.41772 1.36278 1.24219 0.95477 0.99782 0.93945 1.22959 0.87026 1.00579 1.01623 1.23545 0.96964 1.05031 0.99101 1.16460 0.81686 0.74558 0.76151 1.93285 1.84646 1.52941 1.83649 1.93264 1.75884 1.51288 1.94335 1.93278 1.95939 1.94571 1.29615 1.73808 0.96165 1.15682 1.14190 1.85220 1.12317 1.51890 1.43177 1.22343 0.98401 0.98508 0.82354 1.22580 0.98736 0.99959 0.97111 1.20476 0.91287 0.95758 0.85603 0.92737 1.42588 1.76773 1.10920 1.06728 1.19564 1.33602 0.94454 0.88471 0.90308 1.25458 1.03327 0.96861 1.01208 1.69804 1.52083 1.11071 1.29260 0.85330 0.77854 0.77397 0.79899 1.20559 1.22920 1.20468 0.92045 0.94271 0.91388 0.88366 0.88308 0.76357 0.87943 0.88322 0.93604 0.91250 0.79759 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.02 71.98 0.65 -3.06 16 2 C -0.10 -2.89 2.46 -10.72 -0.03 -2.91 16 3 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.13 2.79 5.72 86.36 0.49 3.28 16 5 N -0.59 -12.90 2.97 -821.88 -2.44 -15.34 16 6 C 0.61 13.70 7.68 86.69 0.67 14.36 16 7 O -0.53 -14.45 16.35 -3.98 -0.07 -14.51 16 8 C -0.07 -1.34 6.90 24.39 0.17 -1.17 16 9 C -0.10 -1.64 10.65 22.68 0.24 -1.40 16 10 C -0.09 -1.62 6.63 43.55 0.29 -1.33 16 11 C 0.57 9.45 3.56 71.24 0.25 9.70 16 12 F -0.16 -2.89 17.30 44.97 0.78 -2.12 16 13 F -0.17 -3.06 17.27 44.97 0.78 -2.28 16 14 F -0.15 -2.25 17.08 44.97 0.77 -1.49 16 15 N -0.31 -6.34 12.00 -48.85 -0.59 -6.93 16 16 O 0.16 3.06 7.93 65.88 0.52 3.58 16 17 C 0.11 2.24 6.18 86.51 0.53 2.78 16 18 C -0.14 -4.24 5.67 30.82 0.17 -4.06 16 19 C 0.18 5.98 2.19 45.02 0.10 6.08 16 20 H 0.05 1.81 8.08 -2.38 -0.02 1.79 16 21 N -0.73 -33.62 4.41 -322.81 -1.42 -35.04 16 22 C -0.23 -11.79 9.93 84.03 0.83 -10.96 16 23 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 24 C -0.08 -4.21 5.50 84.86 0.47 -3.75 16 25 N -0.97 -57.83 13.06 21.65 0.28 -57.55 16 26 Si 0.97 44.64 29.55 68.60 2.03 46.67 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 28 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 29 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.40 7.36 -2.38 -0.02 1.39 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.10 2.16 7.00 -2.38 -0.02 2.14 16 34 H 0.10 1.78 8.14 -2.39 -0.02 1.77 16 35 H 0.22 2.55 8.06 -2.91 -0.02 2.52 16 36 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.10 1.90 4.26 -13.17 -0.06 1.84 16 38 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.37 18.94 7.50 -92.71 -0.70 18.24 16 41 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -62.74 356.72 5.85 -56.89 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.36 Total: 20.53 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 4.84 Total: 7.57 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -4.16 Total: -114.86 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.46 Total: -10.93 kcal Atomic # 9 Polarization: -8.20 SS G_CDS: 2.32 Total: -5.88 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -62.74 5.85 -56.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036077603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.780 kcal (2) G-P(sol) polarization free energy of solvation -62.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds