Wall clock time and date at job start Wed Apr 1 2020 06:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.52341 * 2 1 4 4 C 1.52766 * 109.56271 * 240.04764 * 2 1 3 5 5 N 1.46931 * 109.00647 * 185.55069 * 4 2 1 6 6 C 1.34777 * 120.62998 * 233.58437 * 5 4 2 7 7 O 1.21607 * 119.99802 * 6.87559 * 6 5 4 8 8 C 1.47416 * 119.99953 * 186.87929 * 6 5 4 9 9 N 1.36073 * 126.44816 * 5.70872 * 8 6 5 10 10 C 1.29935 * 108.47710 * 179.97438 * 9 8 6 11 11 O 1.34054 * 109.24128 * 0.02562 * 10 9 8 12 12 C 1.34250 * 108.22691 * 359.97438 * 11 10 9 13 13 C 1.50701 * 126.52399 * 180.02562 * 12 11 10 14 14 F 1.39905 * 109.47449 * 269.98097 * 13 12 11 15 15 F 1.39903 * 109.47194 * 29.97707 * 13 12 11 16 16 F 1.39904 * 109.47354 * 149.97746 * 13 12 11 17 17 C 1.46927 * 118.73710 * 53.31156 * 5 4 2 18 18 C 1.53193 * 108.77412 * 306.63966 * 17 5 4 19 19 C 1.53038 * 109.50067 * 120.08148 * 2 1 3 20 20 H 1.09003 * 109.45020 * 61.30137 * 19 2 1 21 21 N 1.46498 * 109.45777 * 301.33771 * 19 2 1 22 22 C 1.36942 * 120.00041 * 154.92890 * 21 19 2 23 23 H 1.08008 * 119.99621 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00126 * 179.97438 * 22 21 19 25 25 N 1.31616 * 120.00090 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99941 * 180.02562 * 24 22 21 27 27 H 1.48511 * 109.47235 * 59.99864 * 26 24 22 28 28 H 1.48502 * 109.47199 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47377 * 300.00022 * 26 24 22 30 30 H 1.08999 * 109.47344 * 299.91948 * 1 2 3 31 31 H 1.08995 * 109.47576 * 59.91857 * 1 2 3 32 32 H 1.09006 * 109.46871 * 179.91712 * 1 2 3 33 33 H 1.08994 * 109.51074 * 65.66975 * 4 2 1 34 34 H 1.09001 * 109.43451 * 305.38525 * 4 2 1 35 35 H 1.07994 * 125.37797 * 179.73861 * 10 9 8 36 36 H 1.08997 * 109.59030 * 66.43029 * 17 5 4 37 37 H 1.09005 * 109.58648 * 186.85589 * 17 5 4 38 38 H 1.08998 * 109.49540 * 174.58501 * 18 17 5 39 39 H 1.08998 * 109.49937 * 294.65013 * 18 17 5 40 40 H 0.96998 * 120.00051 * 334.92865 * 21 19 2 41 41 H 0.96998 * 119.99910 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7187 -1.2472 5 7 3.5046 -0.8291 -1.1697 6 6 4.2811 -0.3855 -2.1780 7 8 3.7838 0.2233 -3.1058 8 6 5.7333 -0.6384 -2.1562 9 7 6.4089 -1.3926 -1.2471 10 6 7.6705 -1.3796 -1.5577 11 8 7.8476 -0.6309 -2.6555 12 6 6.6504 -0.1617 -3.0414 13 6 6.3745 0.7240 -4.2290 14 9 6.4635 2.0653 -3.8412 15 9 7.3149 0.4654 -5.2321 16 9 5.0892 0.4637 -4.7164 17 6 4.1053 -1.4267 0.0307 18 6 3.5709 -0.6950 1.2659 19 6 2.0408 -0.7231 1.2483 20 1 1.6968 -1.7573 1.2350 21 7 1.5266 -0.0529 2.4452 22 6 1.3951 -0.7496 3.6168 23 1 1.6710 -1.7930 3.6585 24 6 0.9083 -0.1145 4.7511 25 7 0.5736 1.1574 4.7007 26 14 0.7297 -1.0647 6.3494 27 1 2.0573 -1.5812 6.7693 28 1 0.1933 -0.1655 7.4026 29 1 -0.2027 -2.2025 6.1474 30 1 -0.3634 0.5126 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.7645 -0.1496 -2.1346 34 1 1.6021 -1.7149 -1.2976 35 1 8.4534 -1.8876 -1.0143 36 1 3.8376 -2.4818 0.0867 37 1 5.1896 -1.3246 -0.0138 38 1 3.9334 -1.1897 2.1669 39 1 3.9164 0.3387 1.2543 40 1 1.2791 0.8842 2.4078 41 1 0.2330 1.6010 5.4932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036080158.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:24:34 Heat of formation + Delta-G solvation = -144.968298 kcal Electronic energy + Delta-G solvation = -31729.405413 eV Core-core repulsion = 26810.749407 eV Total energy + Delta-G solvation = -4918.656007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -51.37977 -48.93578 -48.82216 -44.90247 -41.30534 -39.10824 -36.62304 -36.03911 -34.36903 -33.09782 -32.79507 -31.07053 -28.56539 -27.28924 -26.68209 -25.24548 -24.05106 -23.64821 -23.03476 -21.65198 -20.86838 -19.88432 -19.78612 -19.48321 -19.07228 -18.55757 -18.03581 -17.55282 -16.87944 -16.70490 -16.33989 -15.83392 -15.75646 -15.65183 -15.49737 -15.33184 -15.30804 -15.15478 -15.01642 -14.96437 -14.69872 -14.38299 -14.06637 -13.95269 -13.66096 -13.37926 -13.03248 -12.83208 -12.76711 -12.74856 -12.48170 -12.21939 -12.18800 -11.86211 -11.76282 -11.53216 -11.18024 -11.14669 -10.81802 -10.69694 -9.75354 -8.94677 -7.89763 -5.17521 -0.67952 0.46741 0.76901 1.49417 1.51721 1.57608 1.63211 1.74307 1.89153 2.44681 2.59042 2.71018 2.95653 3.01541 3.26211 3.43635 3.66442 3.79257 3.84542 4.04131 4.07188 4.17492 4.36687 4.38878 4.48636 4.65686 4.73540 4.77134 4.83978 4.93651 5.01448 5.12753 5.23491 5.33141 5.43647 5.49812 5.55932 5.64124 5.97208 6.23073 6.31462 6.81036 7.37844 8.13852 8.37502 9.33713 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019520 B = 0.002773 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.099728 B =10096.344631 C =10821.992224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 H 0.051 0.949 4 C 0.125 3.875 5 N -0.583 5.583 6 C 0.576 3.424 7 O -0.543 6.543 8 C 0.015 3.985 9 N -0.488 5.488 10 C 0.258 3.742 11 O -0.166 6.166 12 C -0.093 4.093 13 C 0.563 3.437 14 F -0.166 7.166 15 F -0.163 7.163 16 F -0.135 7.135 17 C 0.089 3.911 18 C -0.139 4.139 19 C 0.178 3.822 20 H 0.049 0.951 21 N -0.732 5.732 22 C -0.232 4.232 23 H 0.078 0.922 24 C -0.077 4.077 25 N -0.972 5.972 26 Si 0.969 3.031 27 H -0.277 1.277 28 H -0.301 1.301 29 H -0.278 1.278 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.329 0.671 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.066 0.934 39 H 0.037 0.963 40 H 0.370 0.630 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.147 -7.306 -18.214 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.121 4.121 3 H 0.070 0.930 4 C 0.003 3.997 5 N -0.313 5.313 6 C 0.362 3.638 7 O -0.422 6.422 8 C -0.107 4.107 9 N -0.216 5.216 10 C 0.033 3.967 11 O -0.052 6.052 12 C -0.152 4.152 13 C 0.508 3.492 14 F -0.147 7.147 15 F -0.144 7.144 16 F -0.116 7.116 17 C -0.033 4.033 18 C -0.180 4.180 19 C 0.070 3.930 20 H 0.067 0.933 21 N -0.370 5.370 22 C -0.364 4.364 23 H 0.096 0.904 24 C -0.269 4.269 25 N -0.623 5.623 26 Si 0.798 3.202 27 H -0.204 1.204 28 H -0.228 1.228 29 H -0.205 1.205 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.343 0.657 36 H 0.098 0.902 37 H 0.160 0.840 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.202 0.798 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.612 -7.449 -18.094 25.668 hybrid contribution -0.185 0.752 0.717 1.055 sum 16.428 -6.697 -17.377 24.833 Atomic orbital electron populations 1.21564 0.93578 1.02165 1.01328 1.21532 0.96943 0.99065 0.94540 0.93042 1.21679 0.77823 1.01907 0.98274 1.48033 1.07188 1.58246 1.17816 1.17128 0.84108 0.79555 0.82969 1.90910 1.74067 1.41457 1.35761 1.21584 0.95502 0.99634 0.93956 1.70805 1.05676 1.20347 1.24731 1.30080 0.96030 0.88641 0.81978 1.84429 1.29380 1.51405 1.39985 1.22880 0.85428 1.05950 1.00918 1.16530 0.75648 0.77314 0.79756 1.93278 1.95959 1.34545 1.90925 1.93264 1.65000 1.93723 1.62404 1.93449 1.36770 1.93582 1.87790 1.22744 1.02488 0.96791 0.81291 1.22461 0.98323 0.99584 0.97592 1.20458 0.91696 0.95358 0.85530 0.93258 1.42583 1.76914 1.10804 1.06741 1.19574 1.33843 0.94420 0.88516 0.90431 1.25496 1.03159 0.96900 1.01313 1.69817 1.52036 1.11117 1.29335 0.85275 0.77931 0.77338 0.79607 1.20361 1.22753 1.20466 0.94080 0.91506 0.92112 0.88990 0.89156 0.65669 0.90209 0.84033 0.91489 0.94368 0.79846 0.94284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.03 71.98 0.65 -3.49 16 2 C -0.10 -3.33 2.44 -10.86 -0.03 -3.36 16 3 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 4 C 0.13 3.49 5.70 86.22 0.49 3.98 16 5 N -0.58 -16.36 2.98 -823.60 -2.45 -18.81 16 6 C 0.58 16.74 7.66 86.66 0.66 17.41 16 7 O -0.54 -18.07 12.47 -4.05 -0.05 -18.12 16 8 C 0.01 0.34 6.65 40.40 0.27 0.61 16 9 N -0.49 -8.46 7.80 -305.15 -2.38 -10.84 16 10 C 0.26 2.10 13.19 130.52 1.72 3.82 16 11 O -0.17 -2.29 10.72 0.40 0.00 -2.28 16 12 C -0.09 -1.95 6.75 25.19 0.17 -1.78 16 13 C 0.56 12.75 3.39 71.24 0.24 13.00 16 14 F -0.17 -3.99 17.30 44.97 0.78 -3.21 16 15 F -0.16 -3.24 17.30 44.97 0.78 -2.46 16 16 F -0.14 -3.66 13.36 44.97 0.60 -3.06 16 17 C 0.09 2.34 6.11 86.36 0.53 2.87 16 18 C -0.14 -4.69 5.66 30.67 0.17 -4.52 16 19 C 0.18 6.73 2.19 45.02 0.10 6.83 16 20 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 21 N -0.73 -35.78 4.41 -322.81 -1.42 -37.20 16 22 C -0.23 -12.43 9.93 84.03 0.83 -11.59 16 23 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 24 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 25 N -0.97 -59.23 13.06 21.65 0.28 -58.94 16 26 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 28 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 29 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 30 H 0.04 1.60 7.36 -2.39 -0.02 1.58 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.09 2.60 7.00 -2.39 -0.02 2.58 16 34 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.33 -1.97 8.06 -2.91 -0.02 -2.00 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.14 3.37 4.08 -22.02 -0.09 3.28 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.37 19.96 7.51 -92.71 -0.70 19.27 16 41 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -71.83 349.69 4.77 -67.06 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.33 Total: 20.50 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 6.28 Total: 19.91 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -5.97 Total: -125.79 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.05 Total: -20.41 kcal Atomic # 9 Polarization: -10.89 SS G_CDS: 2.16 Total: -8.73 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -71.83 4.77 -67.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036080158.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.911 kcal (2) G-P(sol) polarization free energy of solvation -71.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds