Wall clock time and date at job start Wed Apr 1 2020 06:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50055 * 2 1 4 4 C 1.53192 * 109.49717 * 239.93268 * 2 1 3 5 5 N 1.46927 * 108.77780 * 185.41720 * 4 2 1 6 6 C 1.34774 * 120.63061 * 233.63422 * 5 4 2 7 7 O 1.21612 * 119.99924 * 354.48358 * 6 5 4 8 8 C 1.47412 * 120.00148 * 174.49018 * 6 5 4 9 9 C 1.36097 * 126.45092 * 173.44595 * 8 6 5 10 10 O 1.34252 * 106.95081 * 179.97438 * 9 8 6 11 11 C 1.34056 * 108.22967 * 359.97438 * 10 9 8 12 12 C 1.50700 * 125.37780 * 180.02562 * 11 10 9 13 13 F 1.39905 * 109.47012 * 269.97209 * 12 11 10 14 14 F 1.39896 * 109.47143 * 29.97720 * 12 11 10 15 15 F 1.39899 * 109.46874 * 149.97797 * 12 11 10 16 16 N 1.29930 * 109.23669 * 359.72203 * 11 10 9 17 17 C 1.46924 * 118.73913 * 53.60459 * 5 4 2 18 18 C 1.53199 * 108.77691 * 306.39338 * 17 5 4 19 19 C 1.53040 * 109.33758 * 54.61883 * 18 17 5 20 20 H 1.09004 * 109.45948 * 58.67014 * 19 18 17 21 21 N 1.46503 * 109.46133 * 178.62940 * 19 18 17 22 22 C 1.36936 * 119.99738 * 275.00323 * 21 19 18 23 23 H 1.08003 * 120.00447 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99500 * 179.97438 * 22 21 19 25 25 N 1.31618 * 120.00014 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99918 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47388 * 89.99982 * 26 24 22 28 28 H 1.48498 * 109.47045 * 210.00134 * 26 24 22 29 29 H 1.48500 * 109.46976 * 329.99762 * 26 24 22 30 30 H 1.09001 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46957 * 300.06582 * 1 2 3 32 32 H 1.08995 * 109.47308 * 60.06613 * 1 2 3 33 33 H 1.08992 * 109.58697 * 65.62614 * 4 2 1 34 34 H 1.09007 * 109.70287 * 305.27065 * 4 2 1 35 35 H 1.07999 * 126.52101 * 359.97438 * 9 8 6 36 36 H 1.09000 * 109.58633 * 186.60705 * 17 5 4 37 37 H 1.08996 * 109.58766 * 66.17943 * 17 5 4 38 38 H 1.09000 * 109.49697 * 174.58620 * 18 17 5 39 39 H 1.09002 * 109.49543 * 294.65133 * 18 17 5 40 40 H 0.96997 * 119.99913 * 95.00044 * 21 19 18 41 41 H 0.97004 * 120.00053 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5046 -0.8290 -1.1698 6 6 4.2812 -0.3852 -2.1780 7 8 3.7716 0.0155 -3.2069 8 6 5.7482 -0.3856 -2.0335 9 6 6.6562 -0.0877 -3.0026 10 8 7.8733 -0.2096 -2.4493 11 6 7.7172 -0.5737 -1.1686 12 6 8.8356 -0.8177 -0.1884 13 9 9.2168 -2.1628 -0.2412 14 9 9.9291 -0.0097 -0.5179 15 9 8.3989 -0.5072 1.1040 16 7 6.4493 -0.6768 -0.9043 17 6 4.1053 -1.4268 0.0304 18 6 3.5709 -0.6953 1.2659 19 6 2.0408 -0.7226 1.2486 20 1 1.6962 -1.7567 1.2356 21 7 1.5271 -0.0523 2.4457 22 6 1.3957 -0.7490 3.6173 23 1 1.6704 -1.7927 3.6587 24 6 0.9095 -0.1136 4.7517 25 7 0.5753 1.1584 4.7013 26 14 0.7295 -1.0641 6.3498 27 1 1.9870 -0.9588 7.1327 28 1 -0.3937 -0.4976 7.1388 29 1 0.4522 -2.4914 6.0482 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.7638 -0.1575 -2.1389 34 1 1.6053 -1.7213 -1.3010 35 1 6.4389 0.1933 -4.0225 36 1 5.1896 -1.3247 -0.0141 37 1 3.8375 -2.4819 0.0862 38 1 3.9334 -1.1902 2.1668 39 1 3.9165 0.3384 1.2544 40 1 1.2802 0.8850 2.4085 41 1 0.2352 1.6023 5.4940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036089908.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:01 Heat of formation + Delta-G solvation = -147.576974 kcal Electronic energy + Delta-G solvation = -31325.332115 eV Core-core repulsion = 26406.562987 eV Total energy + Delta-G solvation = -4918.769127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.52528 -49.04100 -49.02900 -45.03505 -41.27180 -39.07923 -36.76681 -36.08130 -34.38057 -33.09498 -32.68198 -31.05349 -28.33151 -27.91913 -26.83360 -25.29296 -24.04707 -23.62663 -23.04249 -21.80033 -20.88428 -20.01433 -19.80637 -19.51173 -19.06072 -18.51372 -18.12427 -17.70353 -17.13277 -16.76713 -16.27663 -15.85606 -15.80174 -15.72747 -15.52542 -15.39726 -15.33048 -15.12080 -15.11221 -14.97034 -14.85520 -14.49157 -14.13924 -14.04170 -13.71676 -13.45205 -13.02751 -12.98778 -12.84862 -12.78691 -12.48715 -12.29276 -12.13633 -11.86376 -11.78201 -11.61731 -11.20635 -11.15699 -10.75407 -10.71008 -9.74708 -8.95429 -7.90901 -5.18385 -0.38903 0.23990 0.27168 1.37167 1.48616 1.49618 1.57685 1.77897 1.94353 2.03303 2.58268 2.82896 2.89952 3.04121 3.36037 3.42815 3.70546 3.78661 3.84095 4.00936 4.04401 4.18240 4.31149 4.36557 4.42515 4.49977 4.71400 4.76831 4.81705 4.92029 5.01747 5.11369 5.21651 5.32303 5.43171 5.48809 5.55125 5.63681 5.76259 6.24830 6.30757 6.85322 7.37202 8.12951 8.36698 9.32699 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011162 B = 0.003297 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.013607 B = 8490.011232 C =10505.621824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.053 0.947 4 C 0.127 3.873 5 N -0.589 5.589 6 C 0.600 3.400 7 O -0.558 6.558 8 C -0.095 4.095 9 C 0.095 3.905 10 O -0.158 6.158 11 C 0.094 3.906 12 C 0.593 3.407 13 F -0.149 7.149 14 F -0.150 7.150 15 F -0.147 7.147 16 N -0.404 5.404 17 C 0.077 3.923 18 C -0.133 4.133 19 C 0.178 3.822 20 H 0.047 0.953 21 N -0.731 5.731 22 C -0.232 4.232 23 H 0.076 0.924 24 C -0.074 4.074 25 N -0.971 5.971 26 Si 0.967 3.033 27 H -0.290 1.290 28 H -0.299 1.299 29 H -0.269 1.269 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.288 0.712 36 H 0.145 0.855 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.039 0.961 40 H 0.371 0.629 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.273 -5.440 -18.703 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.120 4.120 3 H 0.072 0.928 4 C 0.004 3.996 5 N -0.318 5.318 6 C 0.388 3.612 7 O -0.438 6.438 8 C -0.216 4.216 9 C 0.020 3.980 10 O -0.040 6.040 11 C -0.116 4.116 12 C 0.537 3.463 13 F -0.131 7.131 14 F -0.131 7.131 15 F -0.128 7.128 16 N -0.136 5.136 17 C -0.046 4.046 18 C -0.174 4.174 19 C 0.069 3.931 20 H 0.065 0.935 21 N -0.370 5.370 22 C -0.364 4.364 23 H 0.094 0.906 24 C -0.267 4.267 25 N -0.622 5.622 26 Si 0.797 3.203 27 H -0.217 1.217 28 H -0.225 1.225 29 H -0.194 1.194 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.303 0.697 36 H 0.161 0.839 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.202 0.798 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.829 -5.575 -18.487 25.614 hybrid contribution -0.111 0.383 1.080 1.151 sum 16.718 -5.191 -17.407 24.687 Atomic orbital electron populations 1.21568 0.93536 1.02134 1.01402 1.21611 0.96942 0.99056 0.94423 0.92826 1.21740 0.77908 1.01825 0.98089 1.48027 1.07284 1.58373 1.18161 1.16843 0.83775 0.77413 0.83213 1.90806 1.74139 1.50143 1.28730 1.21878 0.96030 1.13109 0.90590 1.26452 0.77881 0.92698 1.00921 1.84459 1.33104 1.64168 1.22307 1.25774 0.93590 1.07493 0.84720 1.15862 0.77697 0.75327 0.77454 1.93335 1.91168 1.32407 1.96139 1.93318 1.54702 1.72889 1.92235 1.93354 1.89434 1.92688 1.37332 1.70343 1.01678 1.14316 1.27248 1.22864 1.03090 0.96456 0.82170 1.22369 0.98242 0.99580 0.97224 1.20461 0.91558 0.95314 0.85737 0.93522 1.42572 1.76900 1.10813 1.06709 1.19594 1.33827 0.94362 0.88602 0.90641 1.25466 1.03101 0.96899 1.01186 1.69818 1.52073 1.11060 1.29229 0.85225 0.76677 0.78232 0.80170 1.21733 1.22545 1.19359 0.92245 0.94121 0.91261 0.88666 0.89480 0.69695 0.83917 0.90756 0.92148 0.94236 0.79767 0.94255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.02 71.98 0.65 -3.43 16 2 C -0.10 -3.29 2.46 -10.72 -0.03 -3.31 16 3 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 4 C 0.13 3.43 5.70 86.36 0.49 3.93 16 5 N -0.59 -16.24 2.97 -822.79 -2.45 -18.69 16 6 C 0.60 15.80 7.68 86.66 0.67 16.47 16 7 O -0.56 -16.24 16.33 -4.07 -0.07 -16.31 16 8 C -0.10 -2.01 6.72 40.41 0.27 -1.74 16 9 C 0.09 1.23 11.95 67.32 0.80 2.03 16 10 O -0.16 -2.24 10.70 0.37 0.00 -2.24 16 11 C 0.09 1.70 7.53 88.39 0.67 2.37 16 12 C 0.59 9.82 3.57 71.24 0.25 10.08 16 13 F -0.15 -2.38 17.30 44.97 0.78 -1.60 16 14 F -0.15 -2.27 17.28 44.97 0.78 -1.49 16 15 F -0.15 -2.96 17.23 44.97 0.77 -2.18 16 16 N -0.40 -9.08 7.64 -293.04 -2.24 -11.32 16 17 C 0.08 2.15 6.33 86.37 0.55 2.70 16 18 C -0.13 -4.74 5.66 30.67 0.17 -4.57 16 19 C 0.18 6.87 2.19 45.02 0.10 6.97 16 20 H 0.05 1.82 8.08 -2.38 -0.02 1.80 16 21 N -0.73 -36.27 4.41 -322.80 -1.42 -37.69 16 22 C -0.23 -12.66 9.93 84.03 0.83 -11.83 16 23 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 24 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 25 N -0.97 -59.49 13.06 21.65 0.28 -59.20 16 26 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 28 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 29 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 1.57 7.37 -2.38 -0.02 1.55 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 33 H 0.10 2.53 7.04 -2.39 -0.02 2.51 16 34 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.29 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.14 3.86 3.66 -51.96 -0.19 3.67 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.37 20.12 7.51 -92.71 -0.70 19.42 16 41 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -68.07 356.90 4.59 -63.47 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.23 Total: 23.25 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 5.90 Total: 15.87 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -5.83 Total: -126.90 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.06 Total: -18.55 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 2.33 Total: -5.27 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -68.07 4.59 -63.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036089908.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.106 kcal (2) G-P(sol) polarization free energy of solvation -68.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds