Wall clock time and date at job start Wed Apr 1 2020 06:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49412 * 2 1 4 4 C 1.53186 * 109.50096 * 120.06068 * 2 1 3 5 5 N 1.46927 * 108.77749 * 174.58804 * 4 2 1 6 6 C 1.34771 * 120.63276 * 126.41289 * 5 4 2 7 7 O 1.21611 * 119.99897 * 354.15883 * 6 5 4 8 8 C 1.47398 * 120.00560 * 174.15252 * 6 5 4 9 9 C 1.37361 * 128.56327 * 324.29932 * 8 6 5 10 10 O 1.33491 * 106.34391 * 179.97438 * 9 8 6 11 11 N 1.20664 * 113.15174 * 359.97438 * 10 9 8 12 12 C 1.30013 * 112.30327 * 359.73482 * 11 10 9 13 13 C 1.50702 * 127.33258 * 180.27291 * 12 11 10 14 14 F 1.39903 * 109.47092 * 270.14517 * 13 12 11 15 15 F 1.39901 * 109.47104 * 30.14654 * 13 12 11 16 16 F 1.39898 * 109.46761 * 150.14602 * 13 12 11 17 17 C 1.46927 * 118.73894 * 306.39532 * 5 4 2 18 18 C 1.53194 * 108.77363 * 53.60814 * 17 5 4 19 19 C 1.53037 * 109.50025 * 239.90886 * 2 1 3 20 20 H 1.09003 * 109.46327 * 58.66730 * 19 2 1 21 21 N 1.46507 * 109.45265 * 298.69809 * 19 2 1 22 22 C 1.36940 * 119.99637 * 155.00058 * 21 19 2 23 23 H 1.07997 * 120.00025 * 0.02562 * 22 21 19 24 24 C 1.38814 * 120.00196 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99554 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00382 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47092 * 90.00325 * 26 24 22 28 28 H 1.48500 * 109.47008 * 210.00321 * 26 24 22 29 29 H 1.48500 * 109.47166 * 330.00247 * 26 24 22 30 30 H 1.09001 * 109.47546 * 299.93154 * 1 2 3 31 31 H 1.08998 * 109.47237 * 59.93890 * 1 2 3 32 32 H 1.09004 * 109.46610 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.58443 * 54.80526 * 4 2 1 34 34 H 1.08999 * 109.70390 * 294.44961 * 4 2 1 35 35 H 1.08001 * 126.82914 * 359.95836 * 9 8 6 36 36 H 1.09001 * 109.58859 * 173.38874 * 17 5 4 37 37 H 1.08994 * 109.58971 * 293.81982 * 17 5 4 38 38 H 1.08992 * 109.49832 * 65.31680 * 18 17 5 39 39 H 1.09002 * 109.49616 * 185.41635 * 18 17 5 40 40 H 0.96998 * 120.00641 * 334.99746 * 21 19 2 41 41 H 0.97005 * 119.99919 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0414 -0.7233 1.2498 5 7 3.5047 -0.8286 1.1698 6 6 4.2812 -0.3855 2.1783 7 8 3.7807 0.2024 3.1179 8 6 5.7370 -0.6135 2.1426 9 6 6.4218 -1.7000 1.6555 10 8 7.7180 -1.4426 1.8442 11 7 7.9181 -0.3735 2.3668 12 6 6.8153 0.2693 2.6133 13 6 6.6721 1.6281 3.2493 14 9 6.5685 1.4849 4.6371 15 9 7.7933 2.4068 2.9431 16 9 5.5214 2.2539 2.7579 17 6 4.1054 -1.4265 -0.0304 18 6 3.5709 -0.6952 -1.2658 19 6 2.0408 -0.7233 -1.2482 20 1 1.6583 -0.2248 -2.1389 21 7 1.5784 -2.1133 -1.2302 22 6 1.4482 -2.8068 -2.4038 23 1 1.6869 -2.3292 -3.3425 24 6 1.0106 -4.1240 -2.3868 25 7 0.7203 -4.7063 -1.2426 26 14 0.8337 -5.0703 -3.9876 27 1 2.1116 -5.7598 -4.2989 28 1 -0.2507 -6.0756 -3.8512 29 1 0.4996 -4.1277 -5.0855 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7212 1.2985 34 1 1.7637 -0.1594 2.1402 35 1 5.9963 -2.5865 1.2088 36 1 5.1897 -1.3243 0.0140 37 1 3.8377 -2.4816 -0.0861 38 1 3.9158 0.3387 -1.2542 39 1 3.9334 -1.1901 -2.1668 40 1 1.3645 -2.5425 -0.3870 41 1 0.4141 -5.6267 -1.2308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036111983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:16 Heat of formation + Delta-G solvation = -98.207546 kcal Electronic energy + Delta-G solvation = -32111.175032 eV Core-core repulsion = 27194.546723 eV Total energy + Delta-G solvation = -4916.628308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.40152 -47.94663 -47.87332 -45.64637 -40.19747 -37.84989 -34.79843 -34.49534 -33.22715 -32.27677 -31.53336 -29.31881 -27.77419 -26.66161 -25.65880 -24.05757 -23.53848 -22.37546 -21.76543 -20.57321 -19.20070 -18.97747 -18.62788 -18.39982 -18.13600 -17.45467 -17.35800 -16.43596 -16.01292 -15.31722 -14.85017 -14.75988 -14.63404 -14.45593 -14.29021 -14.26420 -14.07115 -14.02019 -13.99137 -13.65988 -13.42112 -13.09756 -12.74804 -12.62646 -12.39352 -12.24342 -11.75813 -11.48716 -11.32902 -11.15996 -10.98929 -10.90775 -10.66447 -10.59568 -10.31234 -10.25431 -9.96235 -9.91282 -9.65127 -9.03079 -8.46489 -7.08456 -5.88781 -3.17641 0.66863 0.85392 1.93263 2.33294 2.66726 2.99391 3.13974 3.34734 3.35675 3.41758 3.42847 4.02457 4.15947 4.18445 4.40078 4.49177 4.62536 4.94277 5.02591 5.18703 5.25305 5.36198 5.44791 5.60355 5.67341 5.80044 5.89437 5.95085 6.08350 6.20309 6.25532 6.40383 6.46449 6.55925 6.64028 6.78972 6.88425 7.36754 7.41043 7.60310 8.02583 8.29649 9.41729 9.96923 10.32245 11.33380 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017561 B = 0.003190 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.094187 B = 8775.815194 C = 9617.031540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.067 0.933 4 C 0.121 3.879 5 N -0.588 5.588 6 C 0.586 3.414 7 O -0.525 6.525 8 C -0.199 4.199 9 C 0.004 3.996 10 O 0.132 5.868 11 N -0.297 5.297 12 C -0.044 4.044 13 C 0.562 3.438 14 F -0.160 7.160 15 F -0.167 7.167 16 F -0.150 7.150 17 C 0.101 3.899 18 C -0.149 4.149 19 C 0.178 3.822 20 H 0.053 0.947 21 N -0.718 5.718 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.009 4.009 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.245 0.755 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.384 0.616 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.081 8.819 6.212 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.086 0.914 4 C -0.001 4.001 5 N -0.319 5.319 6 C 0.371 3.629 7 O -0.402 6.402 8 C -0.207 4.207 9 C -0.076 4.076 10 O 0.059 5.941 11 N 0.006 4.994 12 C -0.207 4.207 13 C 0.506 3.494 14 F -0.141 7.141 15 F -0.148 7.148 16 F -0.132 7.132 17 C -0.021 4.021 18 C -0.191 4.191 19 C 0.067 3.933 20 H 0.071 0.929 21 N -0.361 5.361 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.261 0.739 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.054 9.404 6.764 16.717 hybrid contribution -0.911 -0.693 -0.730 1.358 sum 11.142 8.711 6.034 15.377 Atomic orbital electron populations 1.21665 0.93983 1.03260 1.00612 1.21713 0.96702 0.98995 0.95469 0.91411 1.21767 0.77099 1.02032 0.99160 1.47956 1.07469 1.59180 1.17299 1.16743 0.83206 0.79695 0.83230 1.90836 1.73856 1.41152 1.34374 1.22218 0.96117 0.95327 1.07031 1.26838 0.81874 1.01004 0.97908 1.84629 1.26413 1.27127 1.55918 1.73706 1.21989 0.94171 1.09512 1.24593 0.90246 0.98571 1.07296 1.16500 0.74610 0.81872 0.76393 1.93272 1.95782 1.95705 1.29372 1.93250 1.52258 1.76437 1.92858 1.93310 1.49381 1.83059 1.87403 1.22074 0.96450 0.99512 0.84059 1.22522 1.00687 0.98754 0.97095 1.20221 0.90604 0.87420 0.95006 0.92894 1.42478 1.79025 1.07633 1.06966 1.19215 1.37458 0.93832 0.86582 0.91225 1.24692 1.02088 0.97180 0.96600 1.69641 1.51569 1.13114 1.23678 0.86247 0.77316 0.79837 0.83091 1.21790 1.21866 1.20839 0.93651 0.92694 0.90977 0.90053 0.89347 0.73865 0.91324 0.88888 0.93143 0.90395 0.78115 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.05 37.16 0.34 -1.71 16 2 C -0.11 -1.64 2.67 -90.51 -0.24 -1.88 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.84 5.43 -3.71 -0.02 1.82 16 5 N -0.59 -8.40 2.97 -174.05 -0.52 -8.92 16 6 C 0.59 8.75 7.15 -12.53 -0.09 8.66 16 7 O -0.52 -9.36 15.43 5.27 0.08 -9.28 16 8 C -0.20 -2.48 5.60 -102.89 -0.58 -3.06 16 9 C 0.00 0.04 9.98 30.41 0.30 0.34 16 10 O 0.13 1.28 11.06 18.65 0.21 1.49 16 11 N -0.30 -3.57 11.98 34.78 0.42 -3.15 16 12 C -0.04 -0.57 6.86 -79.77 -0.55 -1.12 16 13 C 0.56 7.52 3.57 36.01 0.13 7.65 16 14 F -0.16 -2.20 17.30 2.25 0.04 -2.16 16 15 F -0.17 -2.10 17.28 2.25 0.04 -2.07 16 16 F -0.15 -2.18 15.57 2.25 0.04 -2.15 16 17 C 0.10 1.34 5.24 -3.71 -0.02 1.32 16 18 C -0.15 -2.19 5.78 -26.61 -0.15 -2.34 16 19 C 0.18 3.01 2.53 -67.89 -0.17 2.84 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -15.08 3.64 -53.38 -0.19 -15.28 16 22 C -0.24 -5.84 9.93 -15.06 -0.15 -5.99 16 23 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 25 N -0.93 -25.49 13.06 55.49 0.72 -24.77 16 26 Si 0.90 20.71 29.55 -169.99 -5.02 15.68 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.25 7.53 -51.93 -0.39 0.86 16 33 H 0.08 1.34 6.64 -51.93 -0.34 1.00 16 34 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 35 H 0.25 1.36 7.12 -52.49 -0.37 0.99 16 36 H 0.07 0.72 4.59 -51.93 -0.24 0.48 16 37 H 0.09 1.39 7.74 -51.93 -0.40 0.99 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.38 8.62 5.92 -40.82 -0.24 8.38 16 41 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -29.04 349.93 -4.65 -33.69 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.43 Total: 5.44 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.30 Total: 6.20 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.43 Total: -52.12 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.29 Total: -7.79 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 0.11 Total: -6.38 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.04 -4.65 -33.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036111983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.519 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds