Wall clock time and date at job start Wed Apr 1 2020 06:25:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09003 * 109.49412 * 2 1
4 4 C 1.53186 * 109.50096 * 120.06068 * 2 1 3
5 5 N 1.46927 * 108.77749 * 174.58804 * 4 2 1
6 6 C 1.34771 * 120.63276 * 126.41289 * 5 4 2
7 7 O 1.21611 * 119.99897 * 354.15883 * 6 5 4
8 8 C 1.47398 * 120.00560 * 174.15252 * 6 5 4
9 9 C 1.37361 * 128.56327 * 324.29932 * 8 6 5
10 10 O 1.33491 * 106.34391 * 179.97438 * 9 8 6
11 11 N 1.20664 * 113.15174 * 359.97438 * 10 9 8
12 12 C 1.30013 * 112.30327 * 359.73482 * 11 10 9
13 13 C 1.50702 * 127.33258 * 180.27291 * 12 11 10
14 14 F 1.39903 * 109.47092 * 270.14517 * 13 12 11
15 15 F 1.39901 * 109.47104 * 30.14654 * 13 12 11
16 16 F 1.39898 * 109.46761 * 150.14602 * 13 12 11
17 17 C 1.46927 * 118.73894 * 306.39532 * 5 4 2
18 18 C 1.53194 * 108.77363 * 53.60814 * 17 5 4
19 19 C 1.53037 * 109.50025 * 239.90886 * 2 1 3
20 20 H 1.09003 * 109.46327 * 58.66730 * 19 2 1
21 21 N 1.46507 * 109.45265 * 298.69809 * 19 2 1
22 22 C 1.36940 * 119.99637 * 155.00058 * 21 19 2
23 23 H 1.07997 * 120.00025 * 0.02562 * 22 21 19
24 24 C 1.38814 * 120.00196 * 179.97438 * 22 21 19
25 25 N 1.31621 * 119.99554 * 0.02562 * 24 22 21
26 26 Si 1.86796 * 120.00382 * 180.02562 * 24 22 21
27 27 H 1.48501 * 109.47092 * 90.00325 * 26 24 22
28 28 H 1.48500 * 109.47008 * 210.00321 * 26 24 22
29 29 H 1.48500 * 109.47166 * 330.00247 * 26 24 22
30 30 H 1.09001 * 109.47546 * 299.93154 * 1 2 3
31 31 H 1.08998 * 109.47237 * 59.93890 * 1 2 3
32 32 H 1.09004 * 109.46610 * 179.97438 * 1 2 3
33 33 H 1.09005 * 109.58443 * 54.80526 * 4 2 1
34 34 H 1.08999 * 109.70390 * 294.44961 * 4 2 1
35 35 H 1.08001 * 126.82914 * 359.95836 * 9 8 6
36 36 H 1.09001 * 109.58859 * 173.38874 * 17 5 4
37 37 H 1.08994 * 109.58971 * 293.81982 * 17 5 4
38 38 H 1.08992 * 109.49832 * 65.31680 * 18 17 5
39 39 H 1.09002 * 109.49616 * 185.41635 * 18 17 5
40 40 H 0.96998 * 120.00641 * 334.99746 * 21 19 2
41 41 H 0.97005 * 119.99919 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8937 1.0275 0.0000
4 6 2.0414 -0.7233 1.2498
5 7 3.5047 -0.8286 1.1698
6 6 4.2812 -0.3855 2.1783
7 8 3.7807 0.2024 3.1179
8 6 5.7370 -0.6135 2.1426
9 6 6.4218 -1.7000 1.6555
10 8 7.7180 -1.4426 1.8442
11 7 7.9181 -0.3735 2.3668
12 6 6.8153 0.2693 2.6133
13 6 6.6721 1.6281 3.2493
14 9 6.5685 1.4849 4.6371
15 9 7.7933 2.4068 2.9431
16 9 5.5214 2.2539 2.7579
17 6 4.1054 -1.4265 -0.0304
18 6 3.5709 -0.6952 -1.2658
19 6 2.0408 -0.7233 -1.2482
20 1 1.6583 -0.2248 -2.1389
21 7 1.5784 -2.1133 -1.2302
22 6 1.4482 -2.8068 -2.4038
23 1 1.6869 -2.3292 -3.3425
24 6 1.0106 -4.1240 -2.3868
25 7 0.7203 -4.7063 -1.2426
26 14 0.8337 -5.0703 -3.9876
27 1 2.1116 -5.7598 -4.2989
28 1 -0.2507 -6.0756 -3.8512
29 1 0.4996 -4.1277 -5.0855
30 1 -0.3634 0.5128 0.8906
31 1 -0.3633 0.5148 -0.8894
32 1 -0.3633 -1.0277 -0.0005
33 1 1.6054 -1.7212 1.2985
34 1 1.7637 -0.1594 2.1402
35 1 5.9963 -2.5865 1.2088
36 1 5.1897 -1.3243 0.0140
37 1 3.8377 -2.4816 -0.0861
38 1 3.9158 0.3387 -1.2542
39 1 3.9334 -1.1901 -2.1668
40 1 1.3645 -2.5425 -0.3870
41 1 0.4141 -5.6267 -1.2308
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001036111983.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:25:15
Heat of formation + Delta-G solvation = -115.124127 kcal
Electronic energy + Delta-G solvation = -32111.908590 eV
Core-core repulsion = 27194.546723 eV
Total energy + Delta-G solvation = -4917.361866 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.124 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-51.44164 -48.97121 -48.94376 -46.55335 -41.39272 -39.14367 -36.02545 -35.61299
-34.64115 -33.38501 -32.90540 -30.91764 -28.80300 -27.79964 -26.96082 -25.51534
-24.86804 -23.38570 -22.96824 -21.64167 -20.27241 -19.98967 -19.74715 -19.52427
-19.19361 -19.06364 -18.48424 -17.54574 -17.07872 -16.65652 -16.24392 -15.91548
-15.80885 -15.76735 -15.58294 -15.33995 -15.21982 -15.08309 -15.05661 -14.89299
-14.82221 -14.36113 -14.17133 -13.74093 -13.57884 -13.27179 -12.99365 -12.94108
-12.82071 -12.64563 -12.40227 -12.09400 -12.06572 -11.96874 -11.91643 -11.55354
-11.40379 -11.13489 -11.01503 -10.75762 -9.69353 -8.87473 -7.84097 -5.09516
-0.18173 -0.08414 0.96906 1.38588 1.53515 1.56273 1.62038 1.64879
1.96549 2.12443 2.38678 2.64226 2.99523 3.15520 3.21732 3.50077
3.52624 3.65180 3.86244 3.89946 4.02709 4.11250 4.29520 4.31902
4.40323 4.53113 4.65322 4.72261 4.85078 4.95922 5.03013 5.17401
5.20868 5.30680 5.32009 5.49892 5.61052 5.66562 6.24834 6.37945
6.55643 6.88145 7.46805 8.21542 8.46284 9.38643
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.017561 B = 0.003190 C = 0.002911
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1594.094187 B = 8775.815194 C = 9617.031540
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.100 4.100
3 H 0.081 0.919
4 C 0.126 3.874
5 N -0.585 5.585
6 C 0.589 3.411
7 O -0.560 6.560
8 C -0.227 4.227
9 C 0.043 3.957
10 O 0.152 5.848
11 N -0.304 5.304
12 C -0.058 4.058
13 C 0.560 3.440
14 F -0.166 7.166
15 F -0.164 7.164
16 F -0.159 7.159
17 C 0.106 3.894
18 C -0.144 4.144
19 C 0.173 3.827
20 H 0.045 0.955
21 N -0.722 5.722
22 C -0.225 4.225
23 H 0.073 0.927
24 C -0.066 4.066
25 N -0.965 5.965
26 Si 0.957 3.043
27 H -0.289 1.289
28 H -0.306 1.306
29 H -0.276 1.276
30 H 0.063 0.937
31 H 0.057 0.943
32 H 0.043 0.957
33 H 0.065 0.935
34 H 0.086 0.914
35 H 0.282 0.718
36 H 0.103 0.897
37 H 0.079 0.921
38 H 0.068 0.932
39 H 0.075 0.925
40 H 0.376 0.624
41 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.641 9.075 5.356 16.457
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.120 4.120
3 H 0.100 0.900
4 C 0.004 3.996
5 N -0.316 5.316
6 C 0.376 3.624
7 O -0.439 6.439
8 C -0.235 4.235
9 C -0.037 4.037
10 O 0.077 5.923
11 N 0.002 4.998
12 C -0.220 4.220
13 C 0.505 3.495
14 F -0.147 7.147
15 F -0.145 7.145
16 F -0.141 7.141
17 C -0.016 4.016
18 C -0.184 4.184
19 C 0.064 3.936
20 H 0.063 0.937
21 N -0.363 5.363
22 C -0.357 4.357
23 H 0.091 0.909
24 C -0.258 4.258
25 N -0.616 5.616
26 Si 0.789 3.211
27 H -0.216 1.216
28 H -0.233 1.233
29 H -0.201 1.201
30 H 0.082 0.918
31 H 0.076 0.924
32 H 0.062 0.938
33 H 0.083 0.917
34 H 0.104 0.896
35 H 0.297 0.703
36 H 0.121 0.879
37 H 0.097 0.903
38 H 0.086 0.914
39 H 0.093 0.907
40 H 0.210 0.790
41 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 13.652 9.718 5.885 17.761
hybrid contribution -1.369 -0.704 -0.470 1.610
sum 12.282 9.014 5.415 16.169
Atomic orbital electron populations
1.21600 0.93998 1.01683 1.01699 1.21633 0.96656 0.99278 0.94412
0.90039 1.21604 0.77951 1.01000 0.99073 1.47945 1.07010 1.59048
1.17597 1.16965 0.84126 0.78817 0.82504 1.90816 1.74788 1.42746
1.35598 1.21979 0.94814 0.96987 1.09723 1.27413 0.80913 1.00360
0.95044 1.84645 1.26651 1.26136 1.54881 1.73721 1.21731 0.94683
1.09702 1.24523 0.90772 0.98555 1.08165 1.16577 0.74380 0.82369
0.76202 1.93256 1.95806 1.95761 1.29891 1.93251 1.51981 1.76477
1.92798 1.93285 1.49971 1.83326 1.87488 1.22088 0.98300 0.98271
0.82927 1.22398 0.98334 1.00059 0.97658 1.20409 0.92326 0.85286
0.95584 0.93674 1.42547 1.79130 1.09011 1.05645 1.19520 1.34782
0.93693 0.87713 0.90859 1.25263 1.03549 0.98371 0.98656 1.69775
1.53784 1.12851 1.25201 0.85378 0.76645 0.78472 0.80637 1.21597
1.23322 1.20148 0.91826 0.92384 0.93766 0.91726 0.89603 0.70276
0.87924 0.90322 0.91362 0.90691 0.79039 0.94411
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.84 9.05 71.98 0.65 -3.19 16
2 C -0.10 -2.88 2.67 -10.72 -0.03 -2.91 16
3 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16
4 C 0.13 3.74 5.43 86.36 0.47 4.21 16
5 N -0.59 -15.76 2.97 -822.82 -2.45 -18.20 16
6 C 0.59 16.70 7.15 86.66 0.62 17.32 16
7 O -0.56 -19.69 15.43 -4.07 -0.06 -19.75 16
8 C -0.23 -5.11 5.60 -18.75 -0.10 -5.22 16
9 C 0.04 0.60 9.98 67.61 0.67 1.28 16
10 O 0.15 2.41 11.06 77.00 0.85 3.26 16
11 N -0.30 -6.54 11.98 -44.77 -0.54 -7.07 16
12 C -0.06 -1.40 6.86 45.16 0.31 -1.09 16
13 C 0.56 14.56 3.57 71.24 0.25 14.81 16
14 F -0.17 -4.51 17.30 44.97 0.78 -3.74 16
15 F -0.16 -3.99 17.28 44.97 0.78 -3.21 16
16 F -0.16 -4.55 15.57 44.97 0.70 -3.85 16
17 C 0.11 2.51 5.24 86.36 0.45 2.97 16
18 C -0.14 -3.84 5.78 30.67 0.18 -3.67 16
19 C 0.17 5.61 2.53 45.02 0.11 5.73 16
20 H 0.05 1.55 8.08 -2.39 -0.02 1.53 16
21 N -0.72 -29.93 3.64 -322.80 -1.17 -31.11 16
22 C -0.22 -10.78 9.93 84.03 0.83 -9.95 16
23 H 0.07 3.42 7.83 -2.91 -0.02 3.39 16
24 C -0.07 -3.38 5.50 84.86 0.47 -2.91 16
25 N -0.96 -53.38 13.06 21.65 0.28 -53.10 16
26 Si 0.96 42.47 29.55 68.60 2.03 44.50 16
27 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16
28 H -0.31 -14.14 7.11 99.48 0.71 -13.44 16
29 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16
30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16
31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16
32 H 0.04 1.54 7.53 -2.38 -0.02 1.52 16
33 H 0.06 2.15 6.64 -2.38 -0.02 2.14 16
34 H 0.09 2.61 7.00 -2.39 -0.02 2.59 16
35 H 0.28 1.72 7.12 -2.91 -0.02 1.70 16
36 H 0.10 1.72 4.59 -2.39 -0.01 1.71 16
37 H 0.08 2.17 7.74 -2.39 -0.02 2.15 16
38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
40 H 0.38 16.98 5.92 -92.71 -0.55 16.43 16
41 H 0.25 13.58 8.31 -92.70 -0.77 12.81 16
Total: -1.00 -62.93 349.93 6.65 -56.29
By element:
Atomic # 1 Polarization: 18.06 SS G_CDS: 0.56 Total: 18.62 kcal
Atomic # 6 Polarization: 12.48 SS G_CDS: 4.89 Total: 17.37 kcal
Atomic # 7 Polarization: -105.61 SS G_CDS: -3.87 Total: -109.48 kcal
Atomic # 8 Polarization: -17.29 SS G_CDS: 0.79 Total: -16.50 kcal
Atomic # 9 Polarization: -13.05 SS G_CDS: 2.26 Total: -10.79 kcal
Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal
Total: -62.93 6.65 -56.29 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036111983.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.838 kcal
(2) G-P(sol) polarization free energy of solvation -62.935 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.773 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.649 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.286 kcal
(6) G-S(sol) free energy of system = (1) + (5) -115.124 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds