Wall clock time and date at job start Wed Apr 1 2020 06:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49412 * 2 1 4 4 C 1.53186 * 109.50096 * 120.06068 * 2 1 3 5 5 N 1.46927 * 108.77749 * 174.58804 * 4 2 1 6 6 C 1.34771 * 120.63276 * 126.41289 * 5 4 2 7 7 O 1.21611 * 119.99897 * 354.15883 * 6 5 4 8 8 C 1.47398 * 120.00560 * 174.15252 * 6 5 4 9 9 C 1.37361 * 128.56327 * 324.29932 * 8 6 5 10 10 O 1.33491 * 106.34391 * 179.97438 * 9 8 6 11 11 N 1.20664 * 113.15174 * 359.97438 * 10 9 8 12 12 C 1.30013 * 112.30327 * 359.73482 * 11 10 9 13 13 C 1.50702 * 127.33258 * 180.27291 * 12 11 10 14 14 F 1.39903 * 109.47092 * 270.14517 * 13 12 11 15 15 F 1.39901 * 109.47104 * 30.14654 * 13 12 11 16 16 F 1.39898 * 109.46761 * 150.14602 * 13 12 11 17 17 C 1.46927 * 118.73894 * 306.39532 * 5 4 2 18 18 C 1.53194 * 108.77363 * 53.60814 * 17 5 4 19 19 C 1.53037 * 109.50025 * 239.90886 * 2 1 3 20 20 H 1.09003 * 109.46327 * 58.66730 * 19 2 1 21 21 N 1.46507 * 109.45265 * 298.69809 * 19 2 1 22 22 C 1.36940 * 119.99637 * 155.00058 * 21 19 2 23 23 H 1.07997 * 120.00025 * 0.02562 * 22 21 19 24 24 C 1.38814 * 120.00196 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99554 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00382 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47092 * 90.00325 * 26 24 22 28 28 H 1.48500 * 109.47008 * 210.00321 * 26 24 22 29 29 H 1.48500 * 109.47166 * 330.00247 * 26 24 22 30 30 H 1.09001 * 109.47546 * 299.93154 * 1 2 3 31 31 H 1.08998 * 109.47237 * 59.93890 * 1 2 3 32 32 H 1.09004 * 109.46610 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.58443 * 54.80526 * 4 2 1 34 34 H 1.08999 * 109.70390 * 294.44961 * 4 2 1 35 35 H 1.08001 * 126.82914 * 359.95836 * 9 8 6 36 36 H 1.09001 * 109.58859 * 173.38874 * 17 5 4 37 37 H 1.08994 * 109.58971 * 293.81982 * 17 5 4 38 38 H 1.08992 * 109.49832 * 65.31680 * 18 17 5 39 39 H 1.09002 * 109.49616 * 185.41635 * 18 17 5 40 40 H 0.96998 * 120.00641 * 334.99746 * 21 19 2 41 41 H 0.97005 * 119.99919 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0414 -0.7233 1.2498 5 7 3.5047 -0.8286 1.1698 6 6 4.2812 -0.3855 2.1783 7 8 3.7807 0.2024 3.1179 8 6 5.7370 -0.6135 2.1426 9 6 6.4218 -1.7000 1.6555 10 8 7.7180 -1.4426 1.8442 11 7 7.9181 -0.3735 2.3668 12 6 6.8153 0.2693 2.6133 13 6 6.6721 1.6281 3.2493 14 9 6.5685 1.4849 4.6371 15 9 7.7933 2.4068 2.9431 16 9 5.5214 2.2539 2.7579 17 6 4.1054 -1.4265 -0.0304 18 6 3.5709 -0.6952 -1.2658 19 6 2.0408 -0.7233 -1.2482 20 1 1.6583 -0.2248 -2.1389 21 7 1.5784 -2.1133 -1.2302 22 6 1.4482 -2.8068 -2.4038 23 1 1.6869 -2.3292 -3.3425 24 6 1.0106 -4.1240 -2.3868 25 7 0.7203 -4.7063 -1.2426 26 14 0.8337 -5.0703 -3.9876 27 1 2.1116 -5.7598 -4.2989 28 1 -0.2507 -6.0756 -3.8512 29 1 0.4996 -4.1277 -5.0855 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7212 1.2985 34 1 1.7637 -0.1594 2.1402 35 1 5.9963 -2.5865 1.2088 36 1 5.1897 -1.3243 0.0140 37 1 3.8377 -2.4816 -0.0861 38 1 3.9158 0.3387 -1.2542 39 1 3.9334 -1.1901 -2.1668 40 1 1.3645 -2.5425 -0.3870 41 1 0.4141 -5.6267 -1.2308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036111983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:15 Heat of formation + Delta-G solvation = -115.124127 kcal Electronic energy + Delta-G solvation = -32111.908590 eV Core-core repulsion = 27194.546723 eV Total energy + Delta-G solvation = -4917.361866 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.44164 -48.97121 -48.94376 -46.55335 -41.39272 -39.14367 -36.02545 -35.61299 -34.64115 -33.38501 -32.90540 -30.91764 -28.80300 -27.79964 -26.96082 -25.51534 -24.86804 -23.38570 -22.96824 -21.64167 -20.27241 -19.98967 -19.74715 -19.52427 -19.19361 -19.06364 -18.48424 -17.54574 -17.07872 -16.65652 -16.24392 -15.91548 -15.80885 -15.76735 -15.58294 -15.33995 -15.21982 -15.08309 -15.05661 -14.89299 -14.82221 -14.36113 -14.17133 -13.74093 -13.57884 -13.27179 -12.99365 -12.94108 -12.82071 -12.64563 -12.40227 -12.09400 -12.06572 -11.96874 -11.91643 -11.55354 -11.40379 -11.13489 -11.01503 -10.75762 -9.69353 -8.87473 -7.84097 -5.09516 -0.18173 -0.08414 0.96906 1.38588 1.53515 1.56273 1.62038 1.64879 1.96549 2.12443 2.38678 2.64226 2.99523 3.15520 3.21732 3.50077 3.52624 3.65180 3.86244 3.89946 4.02709 4.11250 4.29520 4.31902 4.40323 4.53113 4.65322 4.72261 4.85078 4.95922 5.03013 5.17401 5.20868 5.30680 5.32009 5.49892 5.61052 5.66562 6.24834 6.37945 6.55643 6.88145 7.46805 8.21542 8.46284 9.38643 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017561 B = 0.003190 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.094187 B = 8775.815194 C = 9617.031540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.100 4.100 3 H 0.081 0.919 4 C 0.126 3.874 5 N -0.585 5.585 6 C 0.589 3.411 7 O -0.560 6.560 8 C -0.227 4.227 9 C 0.043 3.957 10 O 0.152 5.848 11 N -0.304 5.304 12 C -0.058 4.058 13 C 0.560 3.440 14 F -0.166 7.166 15 F -0.164 7.164 16 F -0.159 7.159 17 C 0.106 3.894 18 C -0.144 4.144 19 C 0.173 3.827 20 H 0.045 0.955 21 N -0.722 5.722 22 C -0.225 4.225 23 H 0.073 0.927 24 C -0.066 4.066 25 N -0.965 5.965 26 Si 0.957 3.043 27 H -0.289 1.289 28 H -0.306 1.306 29 H -0.276 1.276 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.282 0.718 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.376 0.624 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.641 9.075 5.356 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.120 4.120 3 H 0.100 0.900 4 C 0.004 3.996 5 N -0.316 5.316 6 C 0.376 3.624 7 O -0.439 6.439 8 C -0.235 4.235 9 C -0.037 4.037 10 O 0.077 5.923 11 N 0.002 4.998 12 C -0.220 4.220 13 C 0.505 3.495 14 F -0.147 7.147 15 F -0.145 7.145 16 F -0.141 7.141 17 C -0.016 4.016 18 C -0.184 4.184 19 C 0.064 3.936 20 H 0.063 0.937 21 N -0.363 5.363 22 C -0.357 4.357 23 H 0.091 0.909 24 C -0.258 4.258 25 N -0.616 5.616 26 Si 0.789 3.211 27 H -0.216 1.216 28 H -0.233 1.233 29 H -0.201 1.201 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.297 0.703 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.210 0.790 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.652 9.718 5.885 17.761 hybrid contribution -1.369 -0.704 -0.470 1.610 sum 12.282 9.014 5.415 16.169 Atomic orbital electron populations 1.21600 0.93998 1.01683 1.01699 1.21633 0.96656 0.99278 0.94412 0.90039 1.21604 0.77951 1.01000 0.99073 1.47945 1.07010 1.59048 1.17597 1.16965 0.84126 0.78817 0.82504 1.90816 1.74788 1.42746 1.35598 1.21979 0.94814 0.96987 1.09723 1.27413 0.80913 1.00360 0.95044 1.84645 1.26651 1.26136 1.54881 1.73721 1.21731 0.94683 1.09702 1.24523 0.90772 0.98555 1.08165 1.16577 0.74380 0.82369 0.76202 1.93256 1.95806 1.95761 1.29891 1.93251 1.51981 1.76477 1.92798 1.93285 1.49971 1.83326 1.87488 1.22088 0.98300 0.98271 0.82927 1.22398 0.98334 1.00059 0.97658 1.20409 0.92326 0.85286 0.95584 0.93674 1.42547 1.79130 1.09011 1.05645 1.19520 1.34782 0.93693 0.87713 0.90859 1.25263 1.03549 0.98371 0.98656 1.69775 1.53784 1.12851 1.25201 0.85378 0.76645 0.78472 0.80637 1.21597 1.23322 1.20148 0.91826 0.92384 0.93766 0.91726 0.89603 0.70276 0.87924 0.90322 0.91362 0.90691 0.79039 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 9.05 71.98 0.65 -3.19 16 2 C -0.10 -2.88 2.67 -10.72 -0.03 -2.91 16 3 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 4 C 0.13 3.74 5.43 86.36 0.47 4.21 16 5 N -0.59 -15.76 2.97 -822.82 -2.45 -18.20 16 6 C 0.59 16.70 7.15 86.66 0.62 17.32 16 7 O -0.56 -19.69 15.43 -4.07 -0.06 -19.75 16 8 C -0.23 -5.11 5.60 -18.75 -0.10 -5.22 16 9 C 0.04 0.60 9.98 67.61 0.67 1.28 16 10 O 0.15 2.41 11.06 77.00 0.85 3.26 16 11 N -0.30 -6.54 11.98 -44.77 -0.54 -7.07 16 12 C -0.06 -1.40 6.86 45.16 0.31 -1.09 16 13 C 0.56 14.56 3.57 71.24 0.25 14.81 16 14 F -0.17 -4.51 17.30 44.97 0.78 -3.74 16 15 F -0.16 -3.99 17.28 44.97 0.78 -3.21 16 16 F -0.16 -4.55 15.57 44.97 0.70 -3.85 16 17 C 0.11 2.51 5.24 86.36 0.45 2.97 16 18 C -0.14 -3.84 5.78 30.67 0.18 -3.67 16 19 C 0.17 5.61 2.53 45.02 0.11 5.73 16 20 H 0.05 1.55 8.08 -2.39 -0.02 1.53 16 21 N -0.72 -29.93 3.64 -322.80 -1.17 -31.11 16 22 C -0.22 -10.78 9.93 84.03 0.83 -9.95 16 23 H 0.07 3.42 7.83 -2.91 -0.02 3.39 16 24 C -0.07 -3.38 5.50 84.86 0.47 -2.91 16 25 N -0.96 -53.38 13.06 21.65 0.28 -53.10 16 26 Si 0.96 42.47 29.55 68.60 2.03 44.50 16 27 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 28 H -0.31 -14.14 7.11 99.48 0.71 -13.44 16 29 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.04 1.54 7.53 -2.38 -0.02 1.52 16 33 H 0.06 2.15 6.64 -2.38 -0.02 2.14 16 34 H 0.09 2.61 7.00 -2.39 -0.02 2.59 16 35 H 0.28 1.72 7.12 -2.91 -0.02 1.70 16 36 H 0.10 1.72 4.59 -2.39 -0.01 1.71 16 37 H 0.08 2.17 7.74 -2.39 -0.02 2.15 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.38 16.98 5.92 -92.71 -0.55 16.43 16 41 H 0.25 13.58 8.31 -92.70 -0.77 12.81 16 Total: -1.00 -62.93 349.93 6.65 -56.29 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.56 Total: 18.62 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 4.89 Total: 17.37 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -3.87 Total: -109.48 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.79 Total: -16.50 kcal Atomic # 9 Polarization: -13.05 SS G_CDS: 2.26 Total: -10.79 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -62.93 6.65 -56.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036111983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.838 kcal (2) G-P(sol) polarization free energy of solvation -62.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds