Wall clock time and date at job start Wed Apr 1 2020 06:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.52100 * 2 1 4 4 C 1.53625 * 109.43156 * 120.20231 * 2 1 3 5 5 N 1.46926 * 108.54483 * 174.72757 * 4 2 1 6 6 C 1.34777 * 120.62798 * 126.37017 * 5 4 2 7 7 O 1.21610 * 120.00443 * 4.01072 * 6 5 4 8 8 C 1.47400 * 119.99690 * 183.73935 * 6 5 4 9 9 C 1.37364 * 128.56230 * 311.96399 * 8 6 5 10 10 O 1.33496 * 106.34117 * 179.97438 * 9 8 6 11 11 N 1.20659 * 113.15577 * 0.02562 * 10 9 8 12 12 C 1.30018 * 112.30079 * 359.73106 * 11 10 9 13 13 C 1.50705 * 127.33290 * 180.29003 * 12 11 10 14 14 F 1.39898 * 109.47122 * 270.12608 * 13 12 11 15 15 F 1.39898 * 109.47038 * 30.12858 * 13 12 11 16 16 F 1.39894 * 109.46718 * 150.13024 * 13 12 11 17 17 C 1.46919 * 118.73814 * 306.09603 * 5 4 2 18 18 C 1.53192 * 108.77770 * 53.85946 * 17 5 4 19 19 C 1.53038 * 109.50302 * 239.91495 * 2 1 3 20 20 H 1.09002 * 109.45839 * 298.70224 * 19 2 1 21 21 N 1.46502 * 109.45731 * 58.65944 * 19 2 1 22 22 C 1.36934 * 120.00117 * 205.06868 * 21 19 2 23 23 H 1.08007 * 119.99992 * 0.02562 * 22 21 19 24 24 C 1.38814 * 120.00409 * 180.02562 * 22 21 19 25 25 N 1.31617 * 119.99504 * 0.02562 * 24 22 21 26 26 Si 1.86791 * 120.00218 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47312 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47346 * 120.00179 * 26 24 22 29 29 H 1.48507 * 109.47155 * 240.00099 * 26 24 22 30 30 H 1.09003 * 109.46833 * 180.08142 * 1 2 3 31 31 H 1.08998 * 109.47584 * 300.08404 * 1 2 3 32 32 H 1.08998 * 109.47145 * 60.08613 * 1 2 3 33 33 H 1.09004 * 109.73889 * 54.98914 * 4 2 1 34 34 H 1.09004 * 109.66685 * 294.42120 * 4 2 1 35 35 H 1.07993 * 126.82952 * 359.94710 * 9 8 6 36 36 H 1.09001 * 109.59074 * 173.64886 * 17 5 4 37 37 H 1.09001 * 109.58953 * 294.07178 * 17 5 4 38 38 H 1.08998 * 109.50050 * 65.31699 * 18 17 5 39 39 H 1.09000 * 109.50194 * 185.41238 * 18 17 5 40 40 H 0.97004 * 119.99598 * 25.07110 * 21 19 2 41 41 H 0.97001 * 120.00143 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0411 -0.7288 1.2521 5 7 3.5046 -0.8290 1.1697 6 6 4.2810 -0.3862 2.1785 7 8 3.7707 0.0346 3.1990 8 6 5.7488 -0.4175 2.0472 9 6 6.5490 -1.4517 1.6262 10 8 7.8042 -1.0002 1.6775 11 7 7.8828 0.1404 2.0630 12 6 6.7179 0.6526 2.3294 13 6 6.4233 2.0453 2.8240 14 9 6.4345 2.0555 4.2229 15 9 7.3976 2.9267 2.3434 16 9 5.1642 2.4465 2.3650 17 6 4.1053 -1.4266 -0.0305 18 6 3.5710 -0.6950 -1.2658 19 6 2.0409 -0.7231 -1.2482 20 1 1.6969 -1.7574 -1.2351 21 7 1.5266 -0.0531 -2.4452 22 6 1.3953 -0.7498 -3.6168 23 1 1.6705 -1.7934 -3.6582 24 6 0.9084 -0.1148 -4.7511 25 7 0.5736 1.1570 -4.7007 26 14 0.7286 -1.0654 -6.3490 27 1 1.1707 -2.4680 -6.1430 28 1 -0.6936 -1.0518 -6.7758 29 1 1.5665 -0.4320 -7.3988 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3634 0.5151 0.8892 32 1 -0.3633 0.5125 -0.8907 33 1 1.6084 -1.7282 1.2986 34 1 1.7629 -0.1661 2.1433 35 1 6.2267 -2.4346 1.3159 36 1 5.1896 -1.3245 0.0140 37 1 3.8377 -2.4817 -0.0865 38 1 3.9160 0.3389 -1.2540 39 1 3.9336 -1.1897 -2.1669 40 1 1.2791 0.8841 -2.4079 41 1 0.2337 1.6009 -5.4934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036111984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:22 Heat of formation + Delta-G solvation = -100.631653 kcal Electronic energy + Delta-G solvation = -31810.945421 eV Core-core repulsion = 26894.211996 eV Total energy + Delta-G solvation = -4916.733425 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.45504 -47.98861 -47.94173 -45.75218 -40.29306 -37.82610 -34.97551 -34.70883 -33.30875 -32.35796 -31.59174 -29.46993 -27.84806 -26.78369 -25.60792 -24.29451 -22.95462 -22.33544 -21.79467 -20.64796 -19.63589 -19.06395 -19.00270 -18.58477 -18.24095 -17.66304 -17.16635 -16.61543 -16.14715 -15.39138 -15.03806 -14.83182 -14.75135 -14.52830 -14.34160 -14.23219 -14.07184 -14.05033 -13.89779 -13.82995 -13.43328 -13.13212 -12.81314 -12.57185 -12.45840 -12.34105 -11.90611 -11.72921 -11.30704 -11.23499 -11.02447 -10.90350 -10.77497 -10.53177 -10.46313 -10.23029 -10.10950 -9.81909 -9.72172 -8.98839 -8.72668 -7.04379 -5.84223 -3.13576 0.58300 0.79160 1.85795 2.14477 2.43344 2.85273 3.05716 3.26015 3.37362 3.42706 3.45599 3.96664 4.00685 4.10293 4.28509 4.49876 4.51137 4.79399 4.85842 5.12428 5.12794 5.17713 5.38485 5.41754 5.58225 5.64990 5.80831 5.96387 6.01988 6.18282 6.22120 6.33815 6.37937 6.49804 6.69166 6.83118 6.94183 7.16624 7.30332 7.61961 7.83849 8.33570 9.45333 10.01989 10.36555 11.38148 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.002992 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.696451 B = 9356.930637 C = 9624.518115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.122 3.878 5 N -0.591 5.591 6 C 0.588 3.412 7 O -0.520 6.520 8 C -0.196 4.196 9 C -0.003 4.003 10 O 0.135 5.865 11 N -0.294 5.294 12 C -0.044 4.044 13 C 0.560 3.440 14 F -0.160 7.160 15 F -0.164 7.164 16 F -0.152 7.152 17 C 0.096 3.904 18 C -0.153 4.153 19 C 0.184 3.816 20 H 0.050 0.950 21 N -0.720 5.720 22 C -0.241 4.241 23 H 0.071 0.929 24 C -0.011 4.011 25 N -0.930 5.930 26 Si 0.905 3.095 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.243 0.757 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.384 0.616 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.744 -5.850 15.227 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.090 0.910 4 C 0.000 4.000 5 N -0.323 5.323 6 C 0.373 3.627 7 O -0.397 6.397 8 C -0.204 4.204 9 C -0.083 4.083 10 O 0.061 5.939 11 N 0.011 4.989 12 C -0.207 4.207 13 C 0.505 3.495 14 F -0.141 7.141 15 F -0.145 7.145 16 F -0.133 7.133 17 C -0.027 4.027 18 C -0.194 4.194 19 C 0.073 3.927 20 H 0.068 0.932 21 N -0.360 5.360 22 C -0.372 4.372 23 H 0.089 0.911 24 C -0.207 4.207 25 N -0.578 5.578 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.259 0.741 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.218 0.782 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.663 -5.193 15.697 20.826 hybrid contribution -0.890 -0.093 -1.043 1.375 sum 11.773 -5.286 14.654 19.526 Atomic orbital electron populations 1.21656 0.93835 1.01856 1.02035 1.21848 0.96801 1.00134 0.94332 0.91035 1.21929 0.76896 1.01340 0.99803 1.48023 1.07538 1.59360 1.17394 1.16770 0.83404 0.78691 0.83802 1.90851 1.73868 1.46596 1.28377 1.22177 0.96532 0.93330 1.08326 1.26600 0.81992 1.01220 0.98499 1.84626 1.28698 1.20296 1.60273 1.73714 1.20847 0.93430 1.10939 1.24589 0.90229 0.97334 1.08541 1.16523 0.75139 0.82123 0.75743 1.93275 1.96159 1.96567 1.28100 1.93263 1.62771 1.70546 1.87934 1.93314 1.40351 1.91109 1.88524 1.22158 0.97714 0.97846 0.85012 1.22714 1.00667 1.00506 0.95522 1.20191 0.90144 0.95799 0.86518 0.93240 1.42413 1.76415 1.11441 1.05758 1.19243 1.36181 0.94091 0.87682 0.91147 1.24734 1.01919 0.95986 0.98073 1.69666 1.49837 1.09460 1.28855 0.86161 0.77366 0.78846 0.84038 1.20576 1.21874 1.21915 0.92959 0.93697 0.90632 0.90870 0.88980 0.74119 0.90735 0.90514 0.92075 0.90247 0.78155 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.03 37.16 0.34 -1.72 16 2 C -0.11 -1.69 2.47 -90.28 -0.22 -1.91 16 3 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.12 1.57 5.73 -3.49 -0.02 1.55 16 5 N -0.59 -7.26 2.97 -173.78 -0.52 -7.78 16 6 C 0.59 7.86 6.91 -12.53 -0.09 7.78 16 7 O -0.52 -8.59 16.25 5.27 0.09 -8.50 16 8 C -0.20 -2.17 5.46 -102.89 -0.56 -2.74 16 9 C 0.00 -0.02 10.03 30.41 0.30 0.29 16 10 O 0.14 1.13 11.06 18.64 0.21 1.34 16 11 N -0.29 -3.30 11.98 34.78 0.42 -2.89 16 12 C -0.04 -0.55 6.86 -79.76 -0.55 -1.09 16 13 C 0.56 7.41 3.57 36.01 0.13 7.54 16 14 F -0.16 -2.13 17.30 2.25 0.04 -2.09 16 15 F -0.16 -2.11 17.28 2.25 0.04 -2.07 16 16 F -0.15 -2.22 16.18 2.25 0.04 -2.19 16 17 C 0.10 1.01 5.96 -3.71 -0.02 0.99 16 18 C -0.15 -2.28 5.66 -26.61 -0.15 -2.43 16 19 C 0.18 3.18 2.19 -67.89 -0.15 3.03 16 20 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 21 N -0.72 -16.42 4.41 -53.38 -0.24 -16.65 16 22 C -0.24 -6.18 9.93 -15.06 -0.15 -6.32 16 23 H 0.07 1.75 7.83 -52.48 -0.41 1.33 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -26.96 13.06 55.49 0.72 -26.23 16 26 Si 0.90 21.37 29.55 -169.99 -5.02 16.35 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.37 7.36 -51.93 -0.38 0.99 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.25 7.03 -51.93 -0.36 0.88 16 35 H 0.24 0.51 7.59 -52.49 -0.40 0.11 16 36 H 0.07 0.62 4.51 -51.93 -0.23 0.39 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.38 9.60 7.51 -40.82 -0.31 9.29 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -31.61 355.86 -4.71 -36.32 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -4.61 Total: 4.47 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.24 Total: 4.56 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.39 Total: -53.55 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: 0.29 Total: -7.16 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.11 Total: -6.34 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.61 -4.71 -36.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036111984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.314 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds