Wall clock time and date at job start Wed Apr 1 2020 06:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.52100 * 2 1 4 4 C 1.53625 * 109.43156 * 120.20231 * 2 1 3 5 5 N 1.46926 * 108.54483 * 174.72757 * 4 2 1 6 6 C 1.34777 * 120.62798 * 126.37017 * 5 4 2 7 7 O 1.21610 * 120.00443 * 4.01072 * 6 5 4 8 8 C 1.47400 * 119.99690 * 183.73935 * 6 5 4 9 9 C 1.37364 * 128.56230 * 311.96399 * 8 6 5 10 10 O 1.33496 * 106.34117 * 179.97438 * 9 8 6 11 11 N 1.20659 * 113.15577 * 0.02562 * 10 9 8 12 12 C 1.30018 * 112.30079 * 359.73106 * 11 10 9 13 13 C 1.50705 * 127.33290 * 180.29003 * 12 11 10 14 14 F 1.39898 * 109.47122 * 270.12608 * 13 12 11 15 15 F 1.39898 * 109.47038 * 30.12858 * 13 12 11 16 16 F 1.39894 * 109.46718 * 150.13024 * 13 12 11 17 17 C 1.46919 * 118.73814 * 306.09603 * 5 4 2 18 18 C 1.53192 * 108.77770 * 53.85946 * 17 5 4 19 19 C 1.53038 * 109.50302 * 239.91495 * 2 1 3 20 20 H 1.09002 * 109.45839 * 298.70224 * 19 2 1 21 21 N 1.46502 * 109.45731 * 58.65944 * 19 2 1 22 22 C 1.36934 * 120.00117 * 205.06868 * 21 19 2 23 23 H 1.08007 * 119.99992 * 0.02562 * 22 21 19 24 24 C 1.38814 * 120.00409 * 180.02562 * 22 21 19 25 25 N 1.31617 * 119.99504 * 0.02562 * 24 22 21 26 26 Si 1.86791 * 120.00218 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47312 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47346 * 120.00179 * 26 24 22 29 29 H 1.48507 * 109.47155 * 240.00099 * 26 24 22 30 30 H 1.09003 * 109.46833 * 180.08142 * 1 2 3 31 31 H 1.08998 * 109.47584 * 300.08404 * 1 2 3 32 32 H 1.08998 * 109.47145 * 60.08613 * 1 2 3 33 33 H 1.09004 * 109.73889 * 54.98914 * 4 2 1 34 34 H 1.09004 * 109.66685 * 294.42120 * 4 2 1 35 35 H 1.07993 * 126.82952 * 359.94710 * 9 8 6 36 36 H 1.09001 * 109.59074 * 173.64886 * 17 5 4 37 37 H 1.09001 * 109.58953 * 294.07178 * 17 5 4 38 38 H 1.08998 * 109.50050 * 65.31699 * 18 17 5 39 39 H 1.09000 * 109.50194 * 185.41238 * 18 17 5 40 40 H 0.97004 * 119.99598 * 25.07110 * 21 19 2 41 41 H 0.97001 * 120.00143 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0411 -0.7288 1.2521 5 7 3.5046 -0.8290 1.1697 6 6 4.2810 -0.3862 2.1785 7 8 3.7707 0.0346 3.1990 8 6 5.7488 -0.4175 2.0472 9 6 6.5490 -1.4517 1.6262 10 8 7.8042 -1.0002 1.6775 11 7 7.8828 0.1404 2.0630 12 6 6.7179 0.6526 2.3294 13 6 6.4233 2.0453 2.8240 14 9 6.4345 2.0555 4.2229 15 9 7.3976 2.9267 2.3434 16 9 5.1642 2.4465 2.3650 17 6 4.1053 -1.4266 -0.0305 18 6 3.5710 -0.6950 -1.2658 19 6 2.0409 -0.7231 -1.2482 20 1 1.6969 -1.7574 -1.2351 21 7 1.5266 -0.0531 -2.4452 22 6 1.3953 -0.7498 -3.6168 23 1 1.6705 -1.7934 -3.6582 24 6 0.9084 -0.1148 -4.7511 25 7 0.5736 1.1570 -4.7007 26 14 0.7286 -1.0654 -6.3490 27 1 1.1707 -2.4680 -6.1430 28 1 -0.6936 -1.0518 -6.7758 29 1 1.5665 -0.4320 -7.3988 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3634 0.5151 0.8892 32 1 -0.3633 0.5125 -0.8907 33 1 1.6084 -1.7282 1.2986 34 1 1.7629 -0.1661 2.1433 35 1 6.2267 -2.4346 1.3159 36 1 5.1896 -1.3245 0.0140 37 1 3.8377 -2.4817 -0.0865 38 1 3.9160 0.3389 -1.2540 39 1 3.9336 -1.1897 -2.1669 40 1 1.2791 0.8841 -2.4079 41 1 0.2337 1.6009 -5.4934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036111984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:21 Heat of formation + Delta-G solvation = -121.254087 kcal Electronic energy + Delta-G solvation = -31811.839677 eV Core-core repulsion = 26894.211996 eV Total energy + Delta-G solvation = -4917.627681 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -51.49761 -49.03219 -49.00465 -46.54845 -41.33997 -39.05556 -36.27334 -35.64960 -34.62131 -33.43541 -32.94104 -31.05689 -28.82474 -27.83356 -26.96485 -25.58356 -24.20800 -23.31036 -23.02279 -21.66882 -20.81702 -20.03194 -19.93292 -19.62180 -19.12521 -19.01556 -18.57056 -17.61839 -17.07818 -16.73241 -16.38952 -15.86712 -15.82310 -15.68685 -15.48322 -15.40049 -15.38612 -15.14058 -15.11739 -14.95551 -14.83867 -14.28870 -13.99827 -13.75467 -13.65017 -13.24825 -13.10725 -12.95492 -12.87077 -12.74074 -12.47151 -12.08684 -12.05471 -12.03438 -11.83508 -11.65838 -11.43643 -11.13735 -11.03139 -10.77338 -9.77870 -8.94037 -7.88703 -5.16156 -0.08483 -0.04813 0.94918 1.25883 1.50815 1.51427 1.60652 1.65975 1.96227 2.13786 2.36674 2.60411 2.95133 3.13095 3.23115 3.45595 3.54124 3.66528 3.80609 3.84051 4.00534 4.09123 4.28096 4.37660 4.40811 4.51285 4.66663 4.78749 4.79767 4.84054 4.97593 5.03266 5.19021 5.31166 5.41999 5.51237 5.58895 5.64672 6.19273 6.32769 6.60630 6.86032 7.39235 8.16087 8.38037 9.35341 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.002992 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.696451 B = 9356.930637 C = 9624.518115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 H 0.046 0.954 4 C 0.129 3.871 5 N -0.590 5.590 6 C 0.591 3.409 7 O -0.560 6.560 8 C -0.229 4.229 9 C 0.045 3.955 10 O 0.156 5.844 11 N -0.306 5.306 12 C -0.068 4.068 13 C 0.556 3.444 14 F -0.164 7.164 15 F -0.166 7.166 16 F -0.166 7.166 17 C 0.103 3.897 18 C -0.146 4.146 19 C 0.178 3.822 20 H 0.059 0.941 21 N -0.734 5.734 22 C -0.226 4.226 23 H 0.084 0.916 24 C -0.078 4.078 25 N -0.973 5.973 26 Si 0.966 3.034 27 H -0.260 1.260 28 H -0.300 1.300 29 H -0.301 1.301 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.299 0.701 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.368 0.632 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.265 -9.507 15.710 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.123 4.123 3 H 0.065 0.935 4 C 0.007 3.993 5 N -0.321 5.321 6 C 0.378 3.622 7 O -0.439 6.439 8 C -0.238 4.238 9 C -0.035 4.035 10 O 0.079 5.921 11 N 0.001 4.999 12 C -0.229 4.229 13 C 0.500 3.500 14 F -0.146 7.146 15 F -0.147 7.147 16 F -0.147 7.147 17 C -0.019 4.019 18 C -0.187 4.187 19 C 0.070 3.930 20 H 0.077 0.923 21 N -0.373 5.373 22 C -0.357 4.357 23 H 0.101 0.899 24 C -0.270 4.270 25 N -0.625 5.625 26 Si 0.796 3.204 27 H -0.184 1.184 28 H -0.228 1.228 29 H -0.229 1.229 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.314 0.686 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.200 0.800 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.229 -8.883 16.214 23.330 hybrid contribution -1.323 1.009 -1.127 2.009 sum 12.905 -7.874 15.088 21.359 Atomic orbital electron populations 1.21571 0.93889 1.02298 1.01044 1.21716 0.96747 0.98931 0.94881 0.93548 1.21809 0.77645 1.02193 0.97624 1.48058 1.07207 1.59142 1.17678 1.16982 0.84307 0.77663 0.83283 1.90829 1.74868 1.48186 1.30056 1.22010 0.95511 0.94665 1.11589 1.27542 0.80150 1.01473 0.94351 1.84625 1.29377 1.19131 1.58953 1.73733 1.20493 0.94459 1.11265 1.24485 0.91222 0.97075 1.10131 1.16698 0.74599 0.83071 0.75587 1.93256 1.96142 1.96664 1.28516 1.93250 1.62677 1.70851 1.87916 1.93279 1.41341 1.91396 1.88668 1.22287 0.99117 0.98783 0.81738 1.22503 0.98446 0.99798 0.97932 1.20477 0.91682 0.95726 0.85139 0.92288 1.42650 1.76849 1.10832 1.06922 1.19676 1.33258 0.94519 0.88297 0.89851 1.25483 1.03392 0.96822 1.01331 1.69833 1.52344 1.11236 1.29086 0.85172 0.76406 0.78579 0.80230 1.18373 1.22829 1.22853 0.91717 0.91945 0.94344 0.88160 0.89777 0.68618 0.87871 0.86684 0.94611 0.90740 0.80039 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.03 71.98 0.65 -3.25 16 2 C -0.10 -3.06 2.47 -10.57 -0.03 -3.08 16 3 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 4 C 0.13 3.04 5.73 86.51 0.50 3.53 16 5 N -0.59 -12.73 2.97 -821.97 -2.44 -15.17 16 6 C 0.59 14.56 6.91 86.66 0.60 15.16 16 7 O -0.56 -18.12 16.25 -4.06 -0.07 -18.19 16 8 C -0.23 -4.44 5.46 -18.74 -0.10 -4.55 16 9 C 0.04 0.38 10.03 67.61 0.68 1.06 16 10 O 0.16 1.97 11.06 76.95 0.85 2.82 16 11 N -0.31 -6.20 11.98 -44.77 -0.54 -6.73 16 12 C -0.07 -1.59 6.86 45.16 0.31 -1.28 16 13 C 0.56 14.89 3.57 71.24 0.25 15.14 16 14 F -0.16 -4.48 17.30 44.97 0.78 -3.70 16 15 F -0.17 -4.33 17.28 44.97 0.78 -3.56 16 16 F -0.17 -5.02 16.18 44.97 0.73 -4.29 16 17 C 0.10 1.69 5.96 86.36 0.51 2.21 16 18 C -0.15 -4.05 5.66 30.67 0.17 -3.87 16 19 C 0.18 5.91 2.19 45.02 0.10 6.01 16 20 H 0.06 1.88 8.08 -2.39 -0.02 1.86 16 21 N -0.73 -33.72 4.41 -322.81 -1.42 -35.14 16 22 C -0.23 -11.45 9.93 84.03 0.83 -10.62 16 23 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 24 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16 25 N -0.97 -58.24 13.06 21.65 0.28 -57.96 16 26 Si 0.97 44.12 29.55 68.60 2.03 46.15 16 27 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 28 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 29 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.43 7.36 -2.39 -0.02 1.41 16 33 H 0.10 1.86 8.14 -2.38 -0.02 1.85 16 34 H 0.08 2.17 7.03 -2.39 -0.02 2.16 16 35 H 0.30 -1.16 7.59 -2.91 -0.02 -1.18 16 36 H 0.10 1.14 4.51 -2.39 -0.01 1.12 16 37 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.37 19.13 7.51 -92.71 -0.70 18.44 16 41 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -73.55 355.86 6.34 -67.22 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.41 Total: 15.92 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 4.95 Total: 12.64 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -4.11 Total: -115.01 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.79 Total: -15.37 kcal Atomic # 9 Polarization: -13.83 SS G_CDS: 2.28 Total: -11.55 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -73.55 6.34 -67.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036111984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.036 kcal (2) G-P(sol) polarization free energy of solvation -73.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds