Wall clock time and date at job start Wed Apr 1 2020 06:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.52651 * 2 1 4 4 C 1.52754 * 109.56877 * 240.04394 * 2 1 3 5 5 N 1.46929 * 109.01115 * 185.55610 * 4 2 1 6 6 C 1.34777 * 120.63004 * 233.58782 * 5 4 2 7 7 O 1.21684 * 120.00212 * 6.85827 * 6 5 4 8 8 C 1.46725 * 119.99854 * 186.86880 * 6 5 4 9 9 O 1.35340 * 126.64480 * 7.65509 * 8 6 5 10 10 C 1.33667 * 107.68498 * 180.02562 * 9 8 6 11 11 N 1.30618 * 109.15527 * 359.97438 * 10 9 8 12 12 C 1.33695 * 108.99062 * 0.02562 * 11 10 9 13 13 C 1.50701 * 126.26906 * 179.73570 * 12 11 10 14 14 F 1.39903 * 109.47260 * 5.02350 * 13 12 11 15 15 F 1.39905 * 109.47013 * 125.02349 * 13 12 11 16 16 F 1.39903 * 109.47267 * 245.02339 * 13 12 11 17 17 C 1.46931 * 118.73807 * 53.30411 * 5 4 2 18 18 C 1.53192 * 108.77501 * 306.64778 * 17 5 4 19 19 C 1.53041 * 109.31513 * 54.63425 * 18 17 5 20 20 H 1.08996 * 109.45821 * 178.60923 * 19 18 17 21 21 N 1.46502 * 109.45660 * 58.65524 * 19 18 17 22 22 C 1.36937 * 120.00386 * 85.00216 * 21 19 18 23 23 H 1.08002 * 119.99496 * 359.97438 * 22 21 19 24 24 C 1.38810 * 119.99976 * 179.97438 * 22 21 19 25 25 N 1.31617 * 120.00439 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99556 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47501 * 89.99981 * 26 24 22 28 28 H 1.48500 * 109.46797 * 209.99860 * 26 24 22 29 29 H 1.48504 * 109.47260 * 329.99750 * 26 24 22 30 30 H 1.08996 * 109.47463 * 299.92345 * 1 2 3 31 31 H 1.08996 * 109.46580 * 59.92628 * 1 2 3 32 32 H 1.09000 * 109.46673 * 179.91606 * 1 2 3 33 33 H 1.08996 * 109.51191 * 65.66899 * 4 2 1 34 34 H 1.09006 * 109.43473 * 305.38418 * 4 2 1 35 35 H 1.08002 * 125.42281 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.58440 * 66.43734 * 17 5 4 37 37 H 1.09001 * 109.58427 * 186.85872 * 17 5 4 38 38 H 1.09000 * 109.49242 * 174.58678 * 18 17 5 39 39 H 1.09000 * 109.50036 * 294.68283 * 18 17 5 40 40 H 0.97011 * 119.99695 * 265.00028 * 21 19 18 41 41 H 0.96995 * 120.00215 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7187 -1.2470 5 7 3.5047 -0.8292 -1.1694 6 6 4.2813 -0.3856 -2.1776 7 8 3.7838 0.2233 -3.1063 8 6 5.7267 -0.6372 -2.1557 9 8 6.3978 -1.4158 -1.2753 10 6 7.6930 -1.3761 -1.6032 11 7 7.8472 -0.6071 -2.6478 12 6 6.6538 -0.1318 -3.0181 13 6 6.3837 0.7974 -4.1734 14 9 7.5675 1.0091 -4.8883 15 9 5.4251 0.2260 -5.0172 16 9 5.9077 2.0199 -3.6872 17 6 4.1053 -1.4267 0.0311 18 6 3.5708 -0.6949 1.2662 19 6 2.0407 -0.7229 1.2485 20 1 1.6581 -0.2244 2.1390 21 7 1.5783 -2.1130 1.2310 22 6 1.4467 -2.8056 2.4049 23 1 1.6842 -2.3273 3.3437 24 6 1.0081 -4.1225 2.3883 25 7 0.7181 -4.7053 1.2444 26 14 0.8279 -5.0671 3.9899 27 1 -0.5444 -4.8776 4.5247 28 1 1.0675 -6.5115 3.7422 29 1 1.8174 -4.5631 4.9759 30 1 -0.3634 0.5126 0.8906 31 1 -0.3632 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.7647 -0.1497 -2.1345 34 1 1.6023 -1.7150 -1.2974 35 1 8.4857 -1.8970 -1.0868 36 1 3.8376 -2.4818 0.0871 37 1 5.1896 -1.3245 -0.0134 38 1 3.9333 -1.1895 2.1673 39 1 3.9158 0.3390 1.2543 40 1 1.3653 -2.5427 0.3878 41 1 0.4120 -5.6256 1.2328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036118699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:21 Heat of formation + Delta-G solvation = -130.457912 kcal Electronic energy + Delta-G solvation = -32223.342745 eV Core-core repulsion = 27305.315956 eV Total energy + Delta-G solvation = -4918.026789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 7.78 seconds Orbital eigenvalues (eV) -50.17442 -47.71155 -47.63538 -44.08098 -40.17346 -37.98545 -35.84418 -34.41495 -33.02036 -31.65680 -31.43600 -29.32765 -27.55100 -26.21132 -25.29909 -23.92518 -23.45826 -22.52859 -21.79737 -20.81821 -19.02323 -18.62883 -18.47999 -18.33239 -17.51014 -17.32385 -17.18959 -16.43771 -16.07646 -15.22898 -14.95851 -14.61485 -14.51482 -14.50688 -14.30711 -14.05685 -13.99522 -13.80275 -13.78683 -13.74401 -13.41822 -13.21433 -12.64763 -12.63787 -12.31914 -12.13642 -11.78498 -11.59192 -11.38626 -11.17420 -10.97597 -10.90279 -10.62266 -10.57643 -10.29808 -10.24529 -9.96065 -9.76310 -9.65420 -9.02663 -8.52075 -7.07755 -5.87538 -3.16664 0.19798 1.75616 1.79678 2.34453 2.71985 2.88884 3.30178 3.35747 3.41621 3.43243 3.61896 4.00751 4.25911 4.42873 4.49816 4.61782 4.87152 5.05626 5.15774 5.22465 5.32332 5.43147 5.53677 5.63340 5.70678 5.77807 5.91487 5.96694 6.09800 6.21796 6.22785 6.38962 6.41101 6.56328 6.62890 6.77077 6.84278 6.86731 7.27452 7.60772 7.80707 8.30578 9.42526 9.97639 10.32715 11.34672 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017932 B = 0.003196 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.107699 B = 8759.682610 C = 9591.306450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.119 3.881 5 N -0.579 5.579 6 C 0.587 3.413 7 O -0.507 6.507 8 C -0.011 4.011 9 O -0.163 6.163 10 C 0.204 3.796 11 N -0.459 5.459 12 C -0.040 4.040 13 C 0.559 3.441 14 F -0.166 7.166 15 F -0.153 7.153 16 F -0.163 7.163 17 C 0.101 3.899 18 C -0.149 4.149 19 C 0.177 3.823 20 H 0.054 0.946 21 N -0.719 5.719 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.009 4.009 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.267 0.733 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.383 0.617 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.065 9.221 -6.220 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.003 4.003 5 N -0.309 5.309 6 C 0.371 3.629 7 O -0.384 6.384 8 C -0.070 4.070 9 O -0.048 6.048 10 C -0.022 4.022 11 N -0.186 5.186 12 C -0.165 4.165 13 C 0.503 3.497 14 F -0.147 7.147 15 F -0.134 7.134 16 F -0.144 7.144 17 C -0.020 4.020 18 C -0.190 4.190 19 C 0.067 3.933 20 H 0.072 0.928 21 N -0.361 5.361 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.282 0.718 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.311 9.563 -6.793 17.005 hybrid contribution -0.462 -0.985 1.013 1.487 sum 11.849 8.578 -5.780 15.729 Atomic orbital electron populations 1.21660 0.93797 1.03328 1.00693 1.21650 0.96852 0.99017 0.95401 0.91334 1.21771 0.76714 1.02352 0.99426 1.48070 1.07753 1.57682 1.17410 1.16516 0.81624 0.80788 0.83924 1.90950 1.71435 1.40836 1.35182 1.23283 0.94840 0.97010 0.91855 1.84923 1.20990 1.53370 1.45563 1.28613 0.84063 0.96612 0.92867 1.70194 1.24172 1.11609 1.12600 1.21639 0.90362 1.04340 1.00173 1.16607 0.74571 0.78229 0.80261 1.93225 1.47066 1.95038 1.79419 1.93300 1.63965 1.84376 1.71767 1.93255 1.88428 1.44838 1.87856 1.22216 0.96950 0.99535 0.83303 1.22546 1.00667 0.98639 0.97152 1.20237 0.90603 0.87474 0.95002 0.92775 1.42478 1.79007 1.07640 1.06976 1.19209 1.37523 0.93895 0.86525 0.91200 1.24702 1.02075 0.97176 0.96618 1.69638 1.51486 1.13132 1.23698 0.86240 0.77819 0.79359 0.83019 1.21769 1.21865 1.20826 0.92602 0.93576 0.90941 0.89116 0.89783 0.71755 0.88882 0.89834 0.90306 0.93201 0.78129 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.05 37.16 0.34 -1.71 16 2 C -0.11 -1.66 2.66 -90.72 -0.24 -1.90 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.84 5.41 -3.93 -0.02 1.82 16 5 N -0.58 -8.85 2.98 -174.55 -0.52 -9.37 16 6 C 0.59 9.17 7.65 -12.83 -0.10 9.07 16 7 O -0.51 -8.84 13.41 5.20 0.07 -8.77 16 8 C -0.01 -0.16 6.79 -36.84 -0.25 -0.41 16 9 O -0.16 -1.80 7.46 4.43 0.03 -1.76 16 10 C 0.20 1.69 13.21 52.25 0.69 2.38 16 11 N -0.46 -5.41 11.07 -10.88 -0.12 -5.53 16 12 C -0.04 -0.55 6.43 -82.47 -0.53 -1.08 16 13 C 0.56 7.92 2.85 36.01 0.10 8.02 16 14 F -0.17 -2.24 17.16 2.25 0.04 -2.20 16 15 F -0.15 -2.32 15.50 2.25 0.03 -2.29 16 16 F -0.16 -2.37 16.85 2.25 0.04 -2.33 16 17 C 0.10 1.51 5.87 -3.71 -0.02 1.49 16 18 C -0.15 -2.28 5.78 -26.61 -0.15 -2.43 16 19 C 0.18 3.07 2.53 -67.89 -0.17 2.90 16 20 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 21 N -0.72 -15.54 3.64 -53.38 -0.19 -15.73 16 22 C -0.24 -5.98 9.93 -15.06 -0.15 -6.13 16 23 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 24 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 25 N -0.93 -26.06 13.06 55.49 0.72 -25.33 16 26 Si 0.90 21.02 29.55 -169.99 -5.02 16.00 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.26 7.54 -51.93 -0.39 0.87 16 33 H 0.09 1.38 7.00 -51.93 -0.36 1.02 16 34 H 0.08 1.43 6.64 -51.93 -0.34 1.09 16 35 H 0.27 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.09 1.63 7.74 -51.93 -0.40 1.22 16 37 H 0.08 1.08 4.26 -52.71 -0.22 0.86 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.38 8.91 5.94 -40.82 -0.24 8.66 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 347.73 15.07 5.24 5.24 Total: -1.00 -29.90 347.73 -4.75 -34.65 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -4.47 Total: 5.75 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -0.60 Total: 11.69 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.11 Total: -55.97 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.10 Total: -10.54 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 0.11 Total: -6.82 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.90 -4.75 -34.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036118699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.805 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.78 seconds