Wall clock time and date at job start Wed Apr 1 2020 06:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.52651 * 2 1 4 4 C 1.52754 * 109.56877 * 240.04394 * 2 1 3 5 5 N 1.46929 * 109.01115 * 185.55610 * 4 2 1 6 6 C 1.34777 * 120.63004 * 233.58782 * 5 4 2 7 7 O 1.21684 * 120.00212 * 6.85827 * 6 5 4 8 8 C 1.46725 * 119.99854 * 186.86880 * 6 5 4 9 9 O 1.35340 * 126.64480 * 7.65509 * 8 6 5 10 10 C 1.33667 * 107.68498 * 180.02562 * 9 8 6 11 11 N 1.30618 * 109.15527 * 359.97438 * 10 9 8 12 12 C 1.33695 * 108.99062 * 0.02562 * 11 10 9 13 13 C 1.50701 * 126.26906 * 179.73570 * 12 11 10 14 14 F 1.39903 * 109.47260 * 5.02350 * 13 12 11 15 15 F 1.39905 * 109.47013 * 125.02349 * 13 12 11 16 16 F 1.39903 * 109.47267 * 245.02339 * 13 12 11 17 17 C 1.46931 * 118.73807 * 53.30411 * 5 4 2 18 18 C 1.53192 * 108.77501 * 306.64778 * 17 5 4 19 19 C 1.53041 * 109.31513 * 54.63425 * 18 17 5 20 20 H 1.08996 * 109.45821 * 178.60923 * 19 18 17 21 21 N 1.46502 * 109.45660 * 58.65524 * 19 18 17 22 22 C 1.36937 * 120.00386 * 85.00216 * 21 19 18 23 23 H 1.08002 * 119.99496 * 359.97438 * 22 21 19 24 24 C 1.38810 * 119.99976 * 179.97438 * 22 21 19 25 25 N 1.31617 * 120.00439 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99556 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47501 * 89.99981 * 26 24 22 28 28 H 1.48500 * 109.46797 * 209.99860 * 26 24 22 29 29 H 1.48504 * 109.47260 * 329.99750 * 26 24 22 30 30 H 1.08996 * 109.47463 * 299.92345 * 1 2 3 31 31 H 1.08996 * 109.46580 * 59.92628 * 1 2 3 32 32 H 1.09000 * 109.46673 * 179.91606 * 1 2 3 33 33 H 1.08996 * 109.51191 * 65.66899 * 4 2 1 34 34 H 1.09006 * 109.43473 * 305.38418 * 4 2 1 35 35 H 1.08002 * 125.42281 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.58440 * 66.43734 * 17 5 4 37 37 H 1.09001 * 109.58427 * 186.85872 * 17 5 4 38 38 H 1.09000 * 109.49242 * 174.58678 * 18 17 5 39 39 H 1.09000 * 109.50036 * 294.68283 * 18 17 5 40 40 H 0.97011 * 119.99695 * 265.00028 * 21 19 18 41 41 H 0.96995 * 120.00215 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7187 -1.2470 5 7 3.5047 -0.8292 -1.1694 6 6 4.2813 -0.3856 -2.1776 7 8 3.7838 0.2233 -3.1063 8 6 5.7267 -0.6372 -2.1557 9 8 6.3978 -1.4158 -1.2753 10 6 7.6930 -1.3761 -1.6032 11 7 7.8472 -0.6071 -2.6478 12 6 6.6538 -0.1318 -3.0181 13 6 6.3837 0.7974 -4.1734 14 9 7.5675 1.0091 -4.8883 15 9 5.4251 0.2260 -5.0172 16 9 5.9077 2.0199 -3.6872 17 6 4.1053 -1.4267 0.0311 18 6 3.5708 -0.6949 1.2662 19 6 2.0407 -0.7229 1.2485 20 1 1.6581 -0.2244 2.1390 21 7 1.5783 -2.1130 1.2310 22 6 1.4467 -2.8056 2.4049 23 1 1.6842 -2.3273 3.3437 24 6 1.0081 -4.1225 2.3883 25 7 0.7181 -4.7053 1.2444 26 14 0.8279 -5.0671 3.9899 27 1 -0.5444 -4.8776 4.5247 28 1 1.0675 -6.5115 3.7422 29 1 1.8174 -4.5631 4.9759 30 1 -0.3634 0.5126 0.8906 31 1 -0.3632 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.7647 -0.1497 -2.1345 34 1 1.6023 -1.7150 -1.2974 35 1 8.4857 -1.8970 -1.0868 36 1 3.8376 -2.4818 0.0871 37 1 5.1896 -1.3245 -0.0134 38 1 3.9333 -1.1895 2.1673 39 1 3.9158 0.3390 1.2543 40 1 1.3653 -2.5427 0.3878 41 1 0.4120 -5.6256 1.2328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036118699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:19 Heat of formation + Delta-G solvation = -150.911116 kcal Electronic energy + Delta-G solvation = -32224.229662 eV Core-core repulsion = 27305.315956 eV Total energy + Delta-G solvation = -4918.913706 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.28428 -48.80959 -48.77058 -44.97104 -41.40898 -39.29886 -36.81050 -35.84714 -34.54325 -33.09618 -32.45990 -30.98049 -28.67725 -27.43878 -26.60115 -25.43873 -24.62810 -23.55446 -23.08063 -21.91256 -20.21572 -19.73116 -19.65475 -19.41219 -19.23623 -18.51795 -18.21379 -17.50624 -17.09719 -16.67614 -16.13296 -16.02720 -15.84003 -15.63785 -15.54405 -15.32940 -15.17610 -15.05351 -14.92575 -14.90303 -14.84112 -14.49401 -14.26889 -13.75200 -13.53853 -13.16363 -13.02129 -12.92033 -12.85301 -12.73290 -12.49054 -12.26004 -12.10032 -11.96539 -11.82733 -11.59665 -11.53389 -11.16706 -10.84275 -10.72004 -9.79419 -8.91578 -7.87090 -5.13233 -0.78814 0.82640 0.96232 1.33283 1.51300 1.52941 1.56287 1.59755 1.79334 2.31220 2.61461 2.62072 3.02290 3.15410 3.47170 3.49687 3.61339 3.82772 3.85364 3.93163 4.04657 4.08989 4.29939 4.35950 4.47686 4.59427 4.66482 4.78522 4.84975 4.96664 5.03047 5.12512 5.16735 5.23792 5.29285 5.45019 5.56608 5.62935 5.94722 6.11650 6.34571 6.61567 7.42804 8.17962 8.41627 9.35939 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017932 B = 0.003196 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.107699 B = 8759.682610 C = 9591.306450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 H 0.088 0.912 4 C 0.123 3.877 5 N -0.580 5.580 6 C 0.588 3.412 7 O -0.531 6.531 8 C -0.033 4.033 9 O -0.165 6.165 10 C 0.245 3.755 11 N -0.488 5.488 12 C -0.038 4.038 13 C 0.555 3.445 14 F -0.163 7.163 15 F -0.163 7.163 16 F -0.167 7.167 17 C 0.109 3.891 18 C -0.141 4.141 19 C 0.171 3.829 20 H 0.051 0.949 21 N -0.724 5.724 22 C -0.226 4.226 23 H 0.076 0.924 24 C -0.070 4.070 25 N -0.968 5.968 26 Si 0.961 3.039 27 H -0.295 1.295 28 H -0.303 1.303 29 H -0.269 1.269 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.326 0.674 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.374 0.626 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.150 10.116 -5.145 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.119 4.119 3 H 0.106 0.894 4 C 0.001 3.999 5 N -0.310 5.310 6 C 0.374 3.626 7 O -0.411 6.411 8 C -0.091 4.091 9 O -0.052 6.052 10 C 0.020 3.980 11 N -0.214 5.214 12 C -0.162 4.162 13 C 0.500 3.500 14 F -0.145 7.145 15 F -0.144 7.144 16 F -0.148 7.148 17 C -0.012 4.012 18 C -0.181 4.181 19 C 0.062 3.938 20 H 0.069 0.931 21 N -0.365 5.365 22 C -0.358 4.358 23 H 0.094 0.906 24 C -0.262 4.262 25 N -0.619 5.619 26 Si 0.792 3.208 27 H -0.223 1.223 28 H -0.230 1.230 29 H -0.194 1.194 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.340 0.660 36 H 0.082 0.918 37 H 0.127 0.873 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.207 0.793 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.430 10.512 -5.700 18.740 hybrid contribution -0.987 -1.197 0.660 1.686 sum 13.443 9.315 -5.039 17.114 Atomic orbital electron populations 1.21594 0.93680 1.01660 1.01972 1.21576 0.96888 0.99483 0.93997 0.89389 1.21641 0.77229 1.01206 0.99801 1.48056 1.07524 1.57778 1.17647 1.16677 0.82508 0.80162 0.83299 1.90928 1.72378 1.41905 1.35842 1.22731 0.94023 0.99009 0.93373 1.84867 1.22120 1.53006 1.45176 1.29996 0.83632 0.93563 0.90774 1.70249 1.23330 1.13370 1.14448 1.21572 0.91213 1.03876 0.99573 1.16741 0.74417 0.78311 0.80569 1.93225 1.46765 1.95037 1.79436 1.93277 1.64430 1.84509 1.72169 1.93239 1.88524 1.45182 1.87889 1.22117 0.98437 0.97665 0.82986 1.22413 0.98572 1.00090 0.97076 1.20459 0.92086 0.85275 0.95951 0.93081 1.42581 1.79109 1.09198 1.05628 1.19557 1.34762 0.93800 0.87698 0.90604 1.25336 1.03544 0.98431 0.98893 1.69787 1.53814 1.12861 1.25425 0.85323 0.77553 0.77578 0.80377 1.22305 1.22975 1.19400 0.92104 0.91528 0.93985 0.88780 0.91973 0.66013 0.91824 0.87348 0.90803 0.90773 0.79257 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.05 71.98 0.65 -3.18 16 2 C -0.10 -2.92 2.66 -10.86 -0.03 -2.94 16 3 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.12 3.81 5.41 86.22 0.47 4.28 16 5 N -0.58 -17.31 2.98 -824.38 -2.46 -19.76 16 6 C 0.59 17.90 7.65 86.46 0.66 18.56 16 7 O -0.53 -18.44 13.41 -4.30 -0.06 -18.50 16 8 C -0.03 -0.84 6.79 24.05 0.16 -0.68 16 9 O -0.17 -3.14 7.46 -7.07 -0.05 -3.19 16 10 C 0.24 3.02 13.21 130.42 1.72 4.74 16 11 N -0.49 -10.10 11.07 -303.12 -3.36 -13.46 16 12 C -0.04 -0.97 6.43 41.83 0.27 -0.71 16 13 C 0.55 15.36 2.85 71.24 0.20 15.57 16 14 F -0.16 -4.27 17.16 44.97 0.77 -3.50 16 15 F -0.16 -4.94 15.50 44.97 0.70 -4.25 16 16 F -0.17 -4.78 16.85 44.97 0.76 -4.02 16 17 C 0.11 3.11 5.87 86.36 0.51 3.62 16 18 C -0.14 -4.03 5.78 30.67 0.18 -3.86 16 19 C 0.17 5.75 2.53 45.02 0.11 5.86 16 20 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 21 N -0.72 -31.47 3.64 -322.81 -1.18 -32.64 16 22 C -0.23 -11.20 9.93 84.03 0.83 -10.37 16 23 H 0.08 3.61 7.83 -2.91 -0.02 3.59 16 24 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 25 N -0.97 -55.52 13.06 21.65 0.28 -55.24 16 26 Si 0.96 43.50 29.55 68.60 2.03 45.52 16 27 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 29 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.04 1.48 7.54 -2.39 -0.02 1.47 16 33 H 0.09 2.85 7.00 -2.39 -0.02 2.84 16 34 H 0.06 2.21 6.64 -2.38 -0.02 2.19 16 35 H 0.33 -0.54 8.06 -2.91 -0.02 -0.56 16 36 H 0.06 2.22 7.74 -2.39 -0.02 2.20 16 37 H 0.11 2.54 4.26 -14.76 -0.06 2.47 16 38 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.37 17.85 5.94 -92.70 -0.55 17.30 16 41 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -66.32 347.73 4.15 -62.17 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.51 Total: 19.20 kcal Atomic # 6 Polarization: 21.45 SS G_CDS: 6.21 Total: 27.66 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -6.70 Total: -121.10 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.11 Total: -21.69 kcal Atomic # 9 Polarization: -13.99 SS G_CDS: 2.23 Total: -11.77 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -66.32 4.15 -62.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036118699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.744 kcal (2) G-P(sol) polarization free energy of solvation -66.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds