Wall clock time and date at job start Wed Apr 1 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.70185 * 2 1 4 4 C 1.53195 * 109.58734 * 239.64566 * 2 1 3 5 5 C 1.53039 * 109.31059 * 294.84349 * 4 2 1 6 6 H 1.09006 * 109.45986 * 58.65775 * 5 4 2 7 7 N 1.46504 * 109.45774 * 178.61184 * 5 4 2 8 8 C 1.36936 * 119.99849 * 204.99976 * 7 5 4 9 9 H 1.08002 * 120.00198 * 0.02562 * 8 7 5 10 10 C 1.38816 * 119.99840 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00054 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99913 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47264 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47298 * 119.99800 * 12 10 8 15 15 H 1.48499 * 109.46918 * 239.99644 * 12 10 8 16 16 C 1.53038 * 109.54105 * 298.63759 * 5 4 2 17 17 C 1.52755 * 109.38536 * 61.23868 * 16 5 4 18 18 N 1.46924 * 109.00966 * 305.59138 * 17 16 5 19 19 C 1.34774 * 120.63035 * 233.58441 * 18 17 16 20 20 O 1.21585 * 120.00468 * 184.35247 * 19 18 17 21 21 C 1.47514 * 120.00189 * 4.35568 * 19 18 17 22 22 C 1.36817 * 126.94849 * 173.48721 * 21 19 18 23 23 C 1.41264 * 103.84983 * 180.02562 * 22 21 19 24 24 C 1.50702 * 126.70558 * 180.02562 * 23 22 21 25 25 F 1.39901 * 109.46926 * 184.99848 * 24 23 22 26 26 F 1.39899 * 109.46667 * 304.99463 * 24 23 22 27 27 F 1.39893 * 109.47517 * 64.99775 * 24 23 22 28 28 N 1.30127 * 106.58786 * 359.97438 * 23 22 21 29 29 O 1.20886 * 111.98271 * 0.02562 * 28 23 22 30 30 H 1.08997 * 109.46573 * 299.64391 * 1 2 3 31 31 H 1.08995 * 109.46843 * 59.64594 * 1 2 3 32 32 H 1.08998 * 109.46628 * 179.64427 * 1 2 3 33 33 H 1.08990 * 109.49851 * 54.79778 * 4 2 1 34 34 H 1.09005 * 109.49461 * 174.86456 * 4 2 1 35 35 H 0.96994 * 120.00094 * 25.00673 * 7 5 4 36 36 H 0.97000 * 120.00206 * 180.02562 * 11 10 8 37 37 H 1.09003 * 109.49620 * 181.31804 * 16 5 4 38 38 H 1.09002 * 109.49438 * 301.40961 * 16 5 4 39 39 H 1.08998 * 109.51237 * 185.70379 * 17 16 5 40 40 H 1.09004 * 109.43050 * 65.42445 * 17 16 5 41 41 H 1.08001 * 128.07864 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 1.6415 -2.2041 -1.1701 6 1 0.5566 -2.2815 -1.0993 7 7 2.1024 -2.8977 -2.3754 8 6 1.4651 -4.0339 -2.7974 9 1 0.6224 -4.4184 -2.2419 10 6 1.9021 -4.6915 -3.9392 11 7 2.9293 -4.2232 -4.6158 12 14 1.0323 -6.2410 -4.5152 13 1 -0.0832 -6.5567 -3.5871 14 1 0.4937 -6.0271 -5.8825 15 1 1.9952 -7.3713 -4.5337 16 6 2.2801 -2.8463 0.0635 17 6 1.7741 -2.1421 1.3211 18 7 2.0226 -0.6996 1.1945 19 6 2.6944 -0.0318 2.1531 20 8 2.8251 1.1746 2.0760 21 6 3.2714 -0.7644 3.2961 22 6 4.0787 -0.2552 4.2764 23 6 4.3413 -1.3658 5.1090 24 6 5.1871 -1.3766 6.3562 25 9 5.2963 -2.6868 6.8342 26 9 6.4612 -0.8806 6.0597 27 9 4.5891 -0.5724 7.3322 28 7 3.7092 -2.3775 4.5891 29 8 3.1101 -2.0695 3.5853 30 1 -0.3632 0.5083 0.8932 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3632 -1.0277 -0.0064 33 1 1.6076 -0.2785 -2.1368 34 1 3.1297 -0.6498 -1.2916 35 1 2.8590 -2.5523 -2.8744 36 1 3.2345 -4.6824 -5.4138 37 1 2.0124 -3.9022 0.1037 38 1 3.3641 -2.7474 0.0052 39 1 2.3025 -2.5288 2.1925 40 1 0.7044 -2.3204 1.4310 41 1 4.4326 0.7590 4.3878 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044645478.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:56 Heat of formation + Delta-G solvation = -91.552817 kcal Electronic energy + Delta-G solvation = -30987.681440 eV Core-core repulsion = 26071.341703 eV Total energy + Delta-G solvation = -4916.339737 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.68981 -48.20942 -48.18304 -45.84091 -40.48351 -37.97455 -35.34732 -34.64615 -33.36216 -32.01064 -31.83871 -29.51830 -27.81435 -27.42820 -25.18162 -24.16055 -23.58525 -23.08415 -21.89757 -21.18587 -19.55078 -19.22551 -18.86286 -18.31672 -18.30761 -17.58299 -17.15010 -16.64986 -16.09009 -15.30244 -15.06636 -15.03271 -14.96719 -14.59162 -14.56723 -14.31135 -14.30633 -14.24260 -14.10184 -13.68381 -13.51819 -13.19701 -13.09018 -12.87760 -12.68659 -12.38769 -11.95940 -11.70588 -11.48259 -11.40760 -11.02113 -10.96206 -10.86827 -10.61567 -10.42855 -10.37912 -10.22592 -9.82383 -9.72648 -8.98138 -8.82513 -7.05265 -5.83961 -3.13647 0.21683 1.00353 1.68955 2.01227 2.57761 2.72638 2.86514 3.22174 3.38469 3.44207 3.46571 3.76383 3.95155 4.09367 4.18001 4.46749 4.51369 4.90377 5.02667 5.08707 5.09647 5.19060 5.31356 5.48180 5.55348 5.63939 5.69370 5.76870 5.90898 6.07296 6.14467 6.23293 6.31775 6.36235 6.46211 6.75669 6.92719 7.01980 7.25649 7.63001 7.66993 8.33957 9.45639 10.01947 10.36215 11.38450 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.002574 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.961995 B =10873.823902 C =12006.268148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.100 0.900 4 C -0.135 4.135 5 C 0.178 3.822 6 H 0.054 0.946 7 N -0.723 5.723 8 C -0.241 4.241 9 H 0.071 0.929 10 C -0.012 4.012 11 N -0.931 5.931 12 Si 0.905 3.095 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.292 1.292 16 C -0.152 4.152 17 C 0.093 3.907 18 N -0.581 5.581 19 C 0.601 3.399 20 O -0.514 6.514 21 C -0.059 4.059 22 C -0.115 4.115 23 C -0.086 4.086 24 C 0.560 3.440 25 F -0.161 7.161 26 F -0.161 7.161 27 F -0.162 7.162 28 N -0.292 5.292 29 O 0.155 5.845 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.589 9.551 20.382 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.118 0.882 4 C -0.174 4.174 5 C 0.068 3.932 6 H 0.072 0.928 7 N -0.363 5.363 8 C -0.372 4.372 9 H 0.089 0.911 10 C -0.208 4.208 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.193 4.193 17 C -0.030 4.030 18 N -0.312 5.312 19 C 0.385 3.615 20 O -0.391 6.391 21 C -0.124 4.124 22 C -0.138 4.138 23 C -0.244 4.244 24 C 0.505 3.495 25 F -0.143 7.143 26 F -0.142 7.142 27 F -0.143 7.143 28 N 0.014 4.986 29 O 0.073 5.927 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.472 8.749 20.700 22.478 hybrid contribution 0.276 -0.259 -0.338 0.508 sum 0.748 8.490 20.362 22.073 Atomic orbital electron populations 1.22157 0.94306 1.03187 1.02337 1.21387 0.94592 0.97016 0.82949 0.88153 1.22256 1.01587 0.97364 0.96213 1.20213 0.96962 0.88987 0.87071 0.92833 1.42429 1.37995 1.29354 1.26550 1.19258 1.10290 1.01096 1.06576 0.91059 1.24754 0.98426 0.99456 0.98180 1.69667 1.27501 1.41270 1.19457 0.86147 0.78683 0.83118 0.78396 1.20507 1.21861 1.21873 1.22641 1.01421 1.00906 0.94334 1.22317 1.01996 0.78241 1.00463 1.48248 1.52784 1.10311 1.19866 1.16546 0.78950 0.85890 0.80143 1.90876 1.60013 1.12013 1.76182 1.24480 1.03569 0.83870 1.00459 1.22638 0.98146 1.01218 0.91803 1.23377 1.06787 0.92972 1.01302 1.16598 0.77495 0.74530 0.80884 1.93272 1.95996 1.35899 1.89088 1.93277 1.40150 1.87566 1.93195 1.93271 1.83462 1.73573 1.64025 1.73831 1.05033 1.22694 0.97046 1.85270 1.51860 1.24821 1.30761 0.92595 0.90844 0.91344 0.89998 0.91597 0.78237 0.93494 0.90061 0.92045 0.89185 0.90223 0.78543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.03 37.16 0.34 -1.40 16 2 C 0.14 1.75 3.19 -67.60 -0.22 1.53 16 3 H 0.10 1.25 7.03 -51.93 -0.37 0.88 16 4 C -0.14 -1.97 5.02 -26.61 -0.13 -2.11 16 5 C 0.18 3.07 2.53 -67.89 -0.17 2.90 16 6 H 0.05 0.93 6.43 -51.93 -0.33 0.59 16 7 N -0.72 -16.69 5.12 -53.38 -0.27 -16.96 16 8 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 9 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 10 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 11 N -0.93 -27.16 13.06 55.49 0.72 -26.43 16 12 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 C -0.15 -2.32 5.64 -26.84 -0.15 -2.47 16 17 C 0.09 1.09 5.89 -3.94 -0.02 1.07 16 18 N -0.58 -7.06 2.68 -166.71 -0.45 -7.50 16 19 C 0.60 7.49 7.69 -12.48 -0.10 7.39 16 20 O -0.51 -7.45 16.35 5.29 0.09 -7.36 16 21 C -0.06 -0.65 6.99 -36.32 -0.25 -0.90 16 22 C -0.12 -1.11 10.92 -38.95 -0.43 -1.54 16 23 C -0.09 -0.89 6.58 -82.16 -0.54 -1.43 16 24 C 0.56 5.30 3.53 36.01 0.13 5.42 16 25 F -0.16 -1.68 17.17 2.25 0.04 -1.64 16 26 F -0.16 -1.48 17.30 2.25 0.04 -1.44 16 27 F -0.16 -1.46 17.30 2.25 0.04 -1.42 16 28 N -0.29 -3.39 11.86 33.52 0.40 -2.99 16 29 O 0.15 1.71 7.75 15.55 0.12 1.83 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.76 5.74 -51.93 -0.30 0.46 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.38 9.61 7.80 -40.82 -0.32 9.30 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.09 0.99 3.82 -54.72 -0.21 0.78 16 40 H 0.08 0.84 7.52 -51.93 -0.39 0.45 16 41 H 0.20 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -29.44 353.29 -5.19 -34.63 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -4.42 Total: 5.80 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.79 Total: 1.63 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.40 Total: -53.90 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: 0.21 Total: -5.53 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.12 Total: -4.50 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.44 -5.19 -34.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044645478.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.920 kcal (2) G-P(sol) polarization free energy of solvation -29.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds