Wall clock time and date at job start Wed Apr 1 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.70185 * 2 1 4 4 C 1.53195 * 109.58734 * 239.64566 * 2 1 3 5 5 C 1.53039 * 109.31059 * 294.84349 * 4 2 1 6 6 H 1.09006 * 109.45986 * 58.65775 * 5 4 2 7 7 N 1.46504 * 109.45774 * 178.61184 * 5 4 2 8 8 C 1.36936 * 119.99849 * 204.99976 * 7 5 4 9 9 H 1.08002 * 120.00198 * 0.02562 * 8 7 5 10 10 C 1.38816 * 119.99840 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00054 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99913 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47264 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47298 * 119.99800 * 12 10 8 15 15 H 1.48499 * 109.46918 * 239.99644 * 12 10 8 16 16 C 1.53038 * 109.54105 * 298.63759 * 5 4 2 17 17 C 1.52755 * 109.38536 * 61.23868 * 16 5 4 18 18 N 1.46924 * 109.00966 * 305.59138 * 17 16 5 19 19 C 1.34774 * 120.63035 * 233.58441 * 18 17 16 20 20 O 1.21585 * 120.00468 * 184.35247 * 19 18 17 21 21 C 1.47514 * 120.00189 * 4.35568 * 19 18 17 22 22 C 1.36817 * 126.94849 * 173.48721 * 21 19 18 23 23 C 1.41264 * 103.84983 * 180.02562 * 22 21 19 24 24 C 1.50702 * 126.70558 * 180.02562 * 23 22 21 25 25 F 1.39901 * 109.46926 * 184.99848 * 24 23 22 26 26 F 1.39899 * 109.46667 * 304.99463 * 24 23 22 27 27 F 1.39893 * 109.47517 * 64.99775 * 24 23 22 28 28 N 1.30127 * 106.58786 * 359.97438 * 23 22 21 29 29 O 1.20886 * 111.98271 * 0.02562 * 28 23 22 30 30 H 1.08997 * 109.46573 * 299.64391 * 1 2 3 31 31 H 1.08995 * 109.46843 * 59.64594 * 1 2 3 32 32 H 1.08998 * 109.46628 * 179.64427 * 1 2 3 33 33 H 1.08990 * 109.49851 * 54.79778 * 4 2 1 34 34 H 1.09005 * 109.49461 * 174.86456 * 4 2 1 35 35 H 0.96994 * 120.00094 * 25.00673 * 7 5 4 36 36 H 0.97000 * 120.00206 * 180.02562 * 11 10 8 37 37 H 1.09003 * 109.49620 * 181.31804 * 16 5 4 38 38 H 1.09002 * 109.49438 * 301.40961 * 16 5 4 39 39 H 1.08998 * 109.51237 * 185.70379 * 17 16 5 40 40 H 1.09004 * 109.43050 * 65.42445 * 17 16 5 41 41 H 1.08001 * 128.07864 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 1.6415 -2.2041 -1.1701 6 1 0.5566 -2.2815 -1.0993 7 7 2.1024 -2.8977 -2.3754 8 6 1.4651 -4.0339 -2.7974 9 1 0.6224 -4.4184 -2.2419 10 6 1.9021 -4.6915 -3.9392 11 7 2.9293 -4.2232 -4.6158 12 14 1.0323 -6.2410 -4.5152 13 1 -0.0832 -6.5567 -3.5871 14 1 0.4937 -6.0271 -5.8825 15 1 1.9952 -7.3713 -4.5337 16 6 2.2801 -2.8463 0.0635 17 6 1.7741 -2.1421 1.3211 18 7 2.0226 -0.6996 1.1945 19 6 2.6944 -0.0318 2.1531 20 8 2.8251 1.1746 2.0760 21 6 3.2714 -0.7644 3.2961 22 6 4.0787 -0.2552 4.2764 23 6 4.3413 -1.3658 5.1090 24 6 5.1871 -1.3766 6.3562 25 9 5.2963 -2.6868 6.8342 26 9 6.4612 -0.8806 6.0597 27 9 4.5891 -0.5724 7.3322 28 7 3.7092 -2.3775 4.5891 29 8 3.1101 -2.0695 3.5853 30 1 -0.3632 0.5083 0.8932 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3632 -1.0277 -0.0064 33 1 1.6076 -0.2785 -2.1368 34 1 3.1297 -0.6498 -1.2916 35 1 2.8590 -2.5523 -2.8744 36 1 3.2345 -4.6824 -5.4138 37 1 2.0124 -3.9022 0.1037 38 1 3.3641 -2.7474 0.0052 39 1 2.3025 -2.5288 2.1925 40 1 0.7044 -2.3204 1.4310 41 1 4.4326 0.7590 4.3878 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044645478.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:55 Heat of formation + Delta-G solvation = -109.235075 kcal Electronic energy + Delta-G solvation = -30988.448201 eV Core-core repulsion = 26071.341703 eV Total energy + Delta-G solvation = -4917.106498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.44362 -48.95671 -48.94186 -46.69099 -41.53169 -39.13934 -36.46231 -35.93840 -34.40830 -33.62693 -32.80987 -31.09611 -28.71650 -28.51514 -26.28505 -25.56223 -24.71906 -24.18907 -23.00906 -22.27507 -20.58886 -19.99845 -19.68064 -19.45722 -19.14590 -18.93026 -18.39087 -17.71894 -17.04062 -16.71207 -16.32310 -15.78672 -15.74621 -15.68445 -15.40112 -15.34076 -15.33394 -15.19732 -15.05941 -15.04913 -14.85168 -14.44281 -14.08489 -13.94676 -13.83713 -13.27311 -13.14223 -12.93185 -12.88211 -12.69737 -12.45251 -12.30154 -12.09451 -12.05212 -11.93509 -11.71533 -11.48993 -11.24443 -11.08883 -10.85731 -9.87557 -8.97808 -7.90913 -5.18851 -0.64860 0.19564 0.88901 1.13618 1.49993 1.50837 1.59958 1.62964 1.80553 2.09343 2.40657 2.58907 3.01913 3.08821 3.28404 3.32712 3.43555 3.66112 3.74508 3.88839 4.00790 4.09539 4.24581 4.37406 4.39452 4.55776 4.56871 4.67135 4.80827 4.84030 5.02295 5.07643 5.09341 5.25962 5.34440 5.48781 5.56921 5.61755 6.03130 6.31343 6.37985 6.69725 7.37724 8.14125 8.35694 9.32876 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.002574 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.961995 B =10873.823902 C =12006.268148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.149 3.851 3 H 0.103 0.897 4 C -0.126 4.126 5 C 0.173 3.827 6 H 0.060 0.940 7 N -0.737 5.737 8 C -0.229 4.229 9 H 0.081 0.919 10 C -0.078 4.078 11 N -0.971 5.971 12 Si 0.966 3.034 13 H -0.262 1.262 14 H -0.298 1.298 15 H -0.299 1.299 16 C -0.143 4.143 17 C 0.103 3.897 18 N -0.582 5.582 19 C 0.606 3.394 20 O -0.534 6.534 21 C -0.070 4.070 22 C -0.099 4.099 23 C -0.088 4.088 24 C 0.567 3.433 25 F -0.167 7.167 26 F -0.158 7.158 27 F -0.157 7.157 28 N -0.307 5.307 29 O 0.154 5.846 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.370 0.630 36 H 0.248 0.752 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 10.080 22.272 24.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.121 0.879 4 C -0.165 4.165 5 C 0.065 3.935 6 H 0.078 0.922 7 N -0.376 5.376 8 C -0.361 4.361 9 H 0.099 0.901 10 C -0.270 4.270 11 N -0.623 5.623 12 Si 0.796 3.204 13 H -0.187 1.187 14 H -0.225 1.225 15 H -0.227 1.227 16 C -0.184 4.184 17 C -0.020 4.020 18 N -0.313 5.313 19 C 0.391 3.609 20 O -0.412 6.412 21 C -0.135 4.135 22 C -0.121 4.121 23 C -0.246 4.246 24 C 0.511 3.489 25 F -0.149 7.149 26 F -0.139 7.139 27 F -0.139 7.139 28 N 0.000 5.000 29 O 0.072 5.928 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.202 0.798 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.615 9.287 22.653 24.491 hybrid contribution 0.625 -0.360 -0.830 1.099 sum 0.009 8.927 21.824 23.579 Atomic orbital electron populations 1.22123 0.92674 1.03300 1.03370 1.21313 0.95742 0.96539 0.81733 0.87947 1.22120 1.00852 0.95810 0.97700 1.20468 0.97248 0.90154 0.85637 0.92232 1.42670 1.37505 1.29147 1.28303 1.19659 1.09584 1.01161 1.05709 0.90123 1.25503 0.99699 1.02675 0.99134 1.69819 1.29566 1.42830 1.20066 0.85167 0.77872 0.79594 0.77731 1.18656 1.22508 1.22673 1.22415 1.00329 1.00457 0.95156 1.22242 1.03258 0.77662 0.98801 1.48256 1.52793 1.10343 1.19874 1.16580 0.78372 0.85654 0.80275 1.90869 1.60693 1.12887 1.76801 1.24271 1.04559 0.84013 1.00637 1.22944 0.96718 1.01912 0.90571 1.23542 1.06584 0.92914 1.01543 1.16468 0.77449 0.74338 0.80636 1.93262 1.96023 1.36436 1.89134 1.93286 1.39967 1.87485 1.93173 1.93283 1.83400 1.73381 1.63798 1.73821 1.05579 1.23302 0.97334 1.85216 1.51949 1.24858 1.30739 0.91405 0.90050 0.91604 0.90223 0.92824 0.79832 0.94292 0.91232 0.93574 0.87952 0.88134 0.76317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.03 71.98 0.65 -2.32 16 2 C 0.15 3.40 3.19 44.98 0.14 3.54 16 3 H 0.10 2.37 7.03 -2.39 -0.02 2.36 16 4 C -0.13 -3.60 5.02 30.67 0.15 -3.45 16 5 C 0.17 5.86 2.53 45.02 0.11 5.97 16 6 H 0.06 1.97 6.43 -2.38 -0.02 1.95 16 7 N -0.74 -34.29 5.12 -322.80 -1.65 -35.94 16 8 C -0.23 -11.86 9.93 84.03 0.83 -11.03 16 9 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 10 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 11 N -0.97 -58.06 13.06 21.65 0.28 -57.78 16 12 Si 0.97 44.64 29.55 68.60 2.03 46.66 16 13 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 14 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 15 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 16 C -0.14 -4.25 5.64 30.53 0.17 -4.08 16 17 C 0.10 2.22 5.89 86.22 0.51 2.73 16 18 N -0.58 -13.04 2.68 -799.61 -2.15 -15.18 16 19 C 0.61 13.92 7.69 86.69 0.67 14.59 16 20 O -0.53 -14.46 16.35 -3.98 -0.07 -14.53 16 21 C -0.07 -1.39 6.99 24.38 0.17 -1.22 16 22 C -0.10 -1.67 10.92 22.68 0.25 -1.43 16 23 C -0.09 -1.65 6.58 43.56 0.29 -1.36 16 24 C 0.57 9.67 3.53 71.24 0.25 9.93 16 25 F -0.17 -3.24 17.17 44.97 0.77 -2.47 16 26 F -0.16 -2.62 17.30 44.97 0.78 -1.84 16 27 F -0.16 -2.52 17.30 44.97 0.78 -1.74 16 28 N -0.31 -6.59 11.86 -48.86 -0.58 -7.17 16 29 O 0.15 3.13 7.75 65.81 0.51 3.64 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.29 5.74 -2.39 -0.01 1.27 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.37 19.03 7.80 -92.71 -0.72 18.31 16 36 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 37 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.10 2.03 3.82 -46.59 -0.18 1.86 16 40 H 0.10 1.82 7.52 -2.39 -0.02 1.80 16 41 H 0.22 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -63.00 353.29 5.59 -57.41 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.22 Total: 20.91 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 4.67 Total: 8.02 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -4.10 Total: -116.07 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.45 Total: -10.88 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 2.33 Total: -6.05 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -63.00 5.59 -57.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044645478.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.823 kcal (2) G-P(sol) polarization free energy of solvation -63.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds