Wall clock time and date at job start Wed Apr 1 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.70132 * 2 1 4 4 C 1.52763 * 109.42678 * 120.15914 * 2 1 3 5 5 C 1.53039 * 109.38665 * 65.42692 * 4 2 1 6 6 H 1.09004 * 109.45330 * 301.21559 * 5 4 2 7 7 N 1.46503 * 109.45242 * 181.25036 * 5 4 2 8 8 C 1.36937 * 119.99921 * 154.93811 * 7 5 4 9 9 H 1.07999 * 119.99830 * 359.97438 * 8 7 5 10 10 C 1.38809 * 119.99660 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00205 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99807 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47519 * 59.99668 * 12 10 8 14 14 H 1.48503 * 109.47184 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47118 * 299.99670 * 12 10 8 16 16 C 1.53037 * 109.53944 * 61.23159 * 5 4 2 17 17 C 1.53186 * 109.31635 * 298.64078 * 16 5 4 18 18 N 1.46917 * 109.58634 * 239.63654 * 2 1 3 19 19 C 1.34776 * 120.62887 * 113.84659 * 18 2 1 20 20 O 1.21587 * 119.99942 * 6.69730 * 19 18 2 21 21 C 1.47517 * 120.00257 * 186.69982 * 19 18 2 22 22 C 1.36821 * 126.94426 * 187.21279 * 21 19 18 23 23 C 1.41265 * 103.84592 * 180.02562 * 22 21 19 24 24 C 1.50698 * 126.70623 * 179.97438 * 23 22 21 25 25 F 1.39893 * 109.47558 * 89.99747 * 24 23 22 26 26 F 1.39905 * 109.46817 * 329.99797 * 24 23 22 27 27 F 1.39896 * 109.47079 * 209.99849 * 24 23 22 28 28 N 1.30130 * 106.58735 * 0.22937 * 23 22 21 29 29 O 1.20884 * 111.98669 * 359.59412 * 28 23 22 30 30 H 1.08997 * 109.47129 * 180.36443 * 1 2 3 31 31 H 1.09001 * 109.47205 * 300.36211 * 1 2 3 32 32 H 1.09005 * 109.46997 * 60.35701 * 1 2 3 33 33 H 1.08999 * 109.56741 * 305.38649 * 4 2 1 34 34 H 1.09006 * 109.38265 * 185.34876 * 4 2 1 35 35 H 0.96996 * 119.99229 * 334.93582 * 7 5 4 36 36 H 0.97001 * 119.99936 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.49871 * 178.68749 * 16 5 4 38 38 H 1.09007 * 109.49573 * 58.59189 * 16 5 4 39 39 H 1.08999 * 109.58715 * 294.84864 * 17 16 5 40 40 H 1.08998 * 109.70806 * 174.48791 * 17 16 5 41 41 H 1.08003 * 128.07682 * 0.06061 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0381 -0.7238 1.2456 5 6 1.6410 -2.1999 1.1729 6 1 0.5564 -2.2809 1.0998 7 7 2.1016 -2.8892 2.3808 8 6 1.4662 -4.0257 2.8050 9 1 0.6254 -4.4137 2.2493 10 6 1.9024 -4.6784 3.9498 11 7 2.9268 -4.2053 4.6273 12 14 1.0353 -6.2283 4.5288 13 1 1.1178 -7.2666 3.4704 14 1 1.6890 -6.7289 5.7647 15 1 -0.3900 -5.9219 4.8116 16 6 2.2842 -2.8431 -0.0578 17 6 1.7740 -2.1423 -1.3208 18 7 2.0226 -0.6997 -1.1943 19 6 2.6945 -0.0320 -2.1531 20 8 3.0046 1.1309 -1.9804 21 6 3.0536 -0.7120 -3.4119 22 6 3.8448 -0.2218 -4.4147 23 6 3.8611 -1.2611 -5.3713 24 6 4.5872 -1.2587 -6.6918 25 9 5.8743 -1.7780 -6.5173 26 9 4.6744 0.0519 -7.1735 27 9 3.8867 -2.0475 -7.6106 28 7 3.1220 -2.2189 -4.8918 29 8 2.6683 -1.9404 -3.8065 30 1 -0.3633 -1.0276 0.0065 31 1 -0.3634 0.5194 0.8867 32 1 -0.3633 0.5083 -0.8932 33 1 1.5987 -0.2722 2.1350 34 1 3.1240 -0.6412 1.2944 35 1 2.8566 -2.5405 2.8800 36 1 3.2318 -4.6617 5.4270 37 1 2.0199 -3.8998 -0.0961 38 1 3.3678 -2.7405 0.0027 39 1 0.7043 -2.3204 -1.4307 40 1 2.3004 -2.5285 -2.1936 41 1 4.3415 0.7360 -4.4633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044645479.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:59 Heat of formation + Delta-G solvation = -112.550559 kcal Electronic energy + Delta-G solvation = -30939.267177 eV Core-core repulsion = 26022.016909 eV Total energy + Delta-G solvation = -4917.250268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.44881 -48.95964 -48.95012 -46.69465 -41.53268 -39.13616 -36.44848 -35.93501 -34.41093 -33.61521 -32.83127 -31.08382 -28.68546 -28.51695 -26.29844 -25.55396 -24.71080 -24.20135 -23.00430 -22.24453 -20.60710 -20.00917 -19.69145 -19.45857 -19.15209 -18.89856 -18.33590 -17.73215 -17.01892 -16.70819 -16.39943 -15.80387 -15.75031 -15.68751 -15.37909 -15.33487 -15.31953 -15.12903 -15.06557 -15.03416 -14.84098 -14.48928 -14.08703 -13.97252 -13.84213 -13.27624 -13.15940 -12.94206 -12.82163 -12.71842 -12.45763 -12.29361 -12.20333 -12.04633 -11.92955 -11.71153 -11.49135 -11.24552 -11.08860 -10.83873 -9.86987 -8.97839 -7.90482 -5.18622 -0.65469 0.18740 0.89599 1.13879 1.50616 1.52351 1.58157 1.61479 1.81410 2.08898 2.40324 2.59272 3.00871 3.10405 3.29786 3.33889 3.43454 3.66003 3.76063 3.88495 3.98483 4.09090 4.24412 4.37066 4.39794 4.55832 4.56987 4.66461 4.80004 4.81635 5.02349 5.07248 5.09485 5.26317 5.34310 5.49156 5.56372 5.61442 6.03640 6.31421 6.35761 6.69253 7.37819 8.14340 8.36055 9.32940 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016294 B = 0.002498 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.003053 B =11204.995590 C =12204.452569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.149 3.851 3 H 0.102 0.898 4 C -0.126 4.126 5 C 0.173 3.827 6 H 0.060 0.940 7 N -0.737 5.737 8 C -0.232 4.232 9 H 0.081 0.919 10 C -0.077 4.077 11 N -0.972 5.972 12 Si 0.967 3.033 13 H -0.278 1.278 14 H -0.302 1.302 15 H -0.277 1.277 16 C -0.142 4.142 17 C 0.106 3.894 18 N -0.583 5.583 19 C 0.607 3.393 20 O -0.535 6.535 21 C -0.069 4.069 22 C -0.100 4.100 23 C -0.089 4.089 24 C 0.567 3.433 25 F -0.164 7.164 26 F -0.153 7.153 27 F -0.166 7.166 28 N -0.306 5.306 29 O 0.158 5.842 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.370 0.630 36 H 0.249 0.751 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.158 10.090 -22.662 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.120 0.880 4 C -0.165 4.165 5 C 0.065 3.935 6 H 0.078 0.922 7 N -0.376 5.376 8 C -0.364 4.364 9 H 0.098 0.902 10 C -0.269 4.269 11 N -0.623 5.623 12 Si 0.797 3.203 13 H -0.205 1.205 14 H -0.228 1.228 15 H -0.203 1.203 16 C -0.183 4.183 17 C -0.017 4.017 18 N -0.314 5.314 19 C 0.392 3.608 20 O -0.413 6.413 21 C -0.134 4.134 22 C -0.122 4.122 23 C -0.246 4.246 24 C 0.512 3.488 25 F -0.145 7.145 26 F -0.134 7.134 27 F -0.148 7.148 28 N 0.002 4.998 29 O 0.074 5.926 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.202 0.798 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.441 9.351 -23.098 24.961 hybrid contribution 0.696 -0.380 0.829 1.147 sum -0.745 8.971 -22.269 24.020 Atomic orbital electron populations 1.22142 0.92594 1.03361 1.03410 1.21217 0.95650 0.96615 0.81888 0.87960 1.22038 1.00847 0.95850 0.97743 1.20464 0.97238 0.90176 0.85603 0.92204 1.42656 1.37734 1.29167 1.28066 1.19590 1.09869 1.01315 1.05659 0.90155 1.25507 0.99698 1.02688 0.99051 1.69808 1.29675 1.42912 1.19887 0.85298 0.77932 0.80055 0.77009 1.20456 1.22831 1.20327 1.22491 1.00267 1.00428 0.95137 1.22218 1.03310 0.77573 0.98571 1.48237 1.53037 1.10236 1.19841 1.16570 0.78388 0.85117 0.80765 1.90871 1.55115 1.16350 1.78967 1.24226 1.03367 0.86665 0.99159 1.22957 0.98442 1.01642 0.89147 1.23544 1.05842 0.95230 1.00011 1.16457 0.76536 0.74579 0.81275 1.93284 1.39137 1.86757 1.95318 1.93280 1.96052 1.35378 1.88708 1.93263 1.78731 1.74544 1.68229 1.73801 1.08341 1.21999 0.95682 1.85221 1.53989 1.29303 1.24106 0.91575 0.90029 0.91324 0.90249 0.92960 0.79846 0.94265 0.91260 0.93606 0.88171 0.88317 0.76365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.02 71.98 0.65 -2.30 16 2 C 0.15 3.40 3.20 44.83 0.14 3.55 16 3 H 0.10 2.39 7.00 -2.39 -0.02 2.37 16 4 C -0.13 -3.64 4.99 30.53 0.15 -3.48 16 5 C 0.17 5.90 2.53 45.02 0.11 6.01 16 6 H 0.06 1.98 6.43 -2.38 -0.02 1.97 16 7 N -0.74 -34.45 5.12 -322.81 -1.65 -36.10 16 8 C -0.23 -12.07 9.93 84.03 0.83 -11.24 16 9 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 10 C -0.08 -4.28 5.50 84.86 0.47 -3.82 16 11 N -0.97 -58.16 13.06 21.65 0.28 -57.87 16 12 Si 0.97 44.62 29.55 68.60 2.03 46.65 16 13 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 14 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 16 C -0.14 -4.27 5.66 30.67 0.17 -4.09 16 17 C 0.11 2.28 5.74 86.36 0.50 2.78 16 18 N -0.58 -13.08 2.68 -799.60 -2.15 -15.22 16 19 C 0.61 13.95 7.68 86.69 0.67 14.62 16 20 O -0.53 -14.66 16.34 -3.99 -0.07 -14.73 16 21 C -0.07 -1.35 6.90 24.39 0.17 -1.19 16 22 C -0.10 -1.66 10.65 22.68 0.24 -1.42 16 23 C -0.09 -1.62 6.63 43.55 0.29 -1.34 16 24 C 0.57 9.50 3.56 71.24 0.25 9.75 16 25 F -0.16 -2.90 17.30 44.97 0.78 -2.12 16 26 F -0.15 -2.27 17.08 44.97 0.77 -1.50 16 27 F -0.17 -3.07 17.27 44.97 0.78 -2.29 16 28 N -0.31 -6.38 11.99 -48.85 -0.59 -6.96 16 29 O 0.16 3.09 7.94 65.79 0.52 3.61 16 30 H 0.07 1.28 5.74 -2.39 -0.01 1.27 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 34 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.37 19.12 7.80 -92.71 -0.72 18.39 16 36 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 37 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.10 1.81 7.52 -2.39 -0.02 1.79 16 40 H 0.10 1.94 4.26 -12.48 -0.05 1.89 16 41 H 0.22 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -63.04 353.43 5.70 -57.34 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.35 Total: 21.36 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 4.65 Total: 7.84 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -4.10 Total: -116.16 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.46 Total: -11.11 kcal Atomic # 9 Polarization: -8.24 SS G_CDS: 2.32 Total: -5.92 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -63.04 5.70 -57.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044645479.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.209 kcal (2) G-P(sol) polarization free energy of solvation -63.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds