Wall clock time and date at job start Wed Apr 1 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.70233 * 2 1 4 4 C 1.53185 * 109.58878 * 120.35654 * 2 1 3 5 5 C 1.53044 * 109.31376 * 174.42229 * 4 2 1 6 6 H 1.08996 * 109.46078 * 58.64188 * 5 4 2 7 7 N 1.46501 * 109.45919 * 178.61550 * 5 4 2 8 8 C 1.36939 * 119.99923 * 205.00219 * 7 5 4 9 9 H 1.08001 * 119.99794 * 359.72092 * 8 7 5 10 10 C 1.38808 * 120.00134 * 179.72682 * 8 7 5 11 11 N 1.31616 * 119.99942 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00109 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46906 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.46960 * 119.99436 * 12 10 8 15 15 H 1.48490 * 109.46963 * 239.99599 * 12 10 8 16 16 C 1.53038 * 109.53789 * 298.63194 * 5 4 2 17 17 C 1.53195 * 109.31091 * 61.36631 * 16 5 4 18 18 N 1.46927 * 108.77449 * 305.36456 * 17 16 5 19 19 C 1.34780 * 120.63392 * 233.58670 * 18 17 16 20 20 O 1.21607 * 120.00477 * 186.63413 * 19 18 17 21 21 C 1.47427 * 119.99375 * 6.63075 * 19 18 17 22 22 C 1.36089 * 126.44440 * 187.14462 * 21 19 18 23 23 O 1.34262 * 106.94979 * 179.97438 * 22 21 19 24 24 C 1.34047 * 108.22304 * 359.97438 * 23 22 21 25 25 C 1.50706 * 125.37741 * 180.02562 * 24 23 22 26 26 F 1.39897 * 109.47130 * 269.97848 * 25 24 23 27 27 F 1.39899 * 109.46911 * 29.97864 * 25 24 23 28 28 F 1.39905 * 109.46986 * 149.97802 * 25 24 23 29 29 N 1.29943 * 109.24732 * 359.74961 * 24 23 22 30 30 H 1.09001 * 109.46980 * 293.57169 * 1 2 3 31 31 H 1.08996 * 109.47346 * 53.56967 * 1 2 3 32 32 H 1.08997 * 109.47057 * 173.57535 * 1 2 3 33 33 H 1.09003 * 109.49842 * 54.47071 * 4 2 1 34 34 H 1.09000 * 109.52777 * 294.38918 * 4 2 1 35 35 H 0.96997 * 120.00194 * 24.72188 * 7 5 4 36 36 H 0.97006 * 119.99850 * 180.02562 * 11 10 8 37 37 H 1.08997 * 109.49632 * 181.31548 * 16 5 4 38 38 H 1.09002 * 109.49764 * 301.41893 * 16 5 4 39 39 H 1.08999 * 109.59180 * 185.57947 * 17 16 5 40 40 H 1.09000 * 109.70381 * 65.22173 * 17 16 5 41 41 H 1.07997 * 126.52799 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2453 5 6 3.5676 -0.8479 1.1700 6 1 4.0062 0.1473 1.0990 7 7 4.0653 -1.5158 2.3753 8 6 5.3498 -1.2987 2.7973 9 1 5.9973 -0.6387 2.2392 10 6 5.8196 -1.9270 3.9424 11 7 5.0304 -2.7310 4.6228 12 14 7.5721 -1.6315 4.5178 13 1 8.2478 -0.6939 3.5852 14 1 7.5529 -1.0453 5.8820 15 1 8.3087 -2.9205 4.5432 16 6 3.9570 -1.6657 -0.0636 17 6 3.4651 -0.9469 -1.3238 18 7 2.0226 -0.6995 -1.1945 19 6 1.1673 -1.1061 -2.1536 20 8 -0.0058 -0.7913 -2.0955 21 6 1.6543 -1.9325 -3.2731 22 6 0.9451 -2.2999 -4.3750 23 8 1.7628 -3.0440 -5.1367 24 6 2.9484 -3.1316 -4.5172 25 6 4.1504 -3.8787 -5.0352 26 9 4.1156 -5.1976 -4.5701 27 9 4.1334 -3.8768 -6.4341 28 9 5.3179 -3.2550 -4.5821 29 7 2.8994 -2.4658 -3.4025 30 1 -0.3633 0.4110 0.9419 31 1 -0.3634 0.6102 -0.8268 32 1 -0.3633 -1.0212 -0.1150 33 1 1.6030 -1.7253 1.2912 34 1 1.7661 -0.1674 2.1371 35 1 3.4837 -2.1085 2.8765 36 1 5.3586 -3.1698 5.4233 37 1 5.0412 -1.7695 -0.1038 38 1 3.4983 -2.6528 -0.0053 39 1 3.6517 -1.5717 -2.1973 40 1 3.9901 0.0019 -1.4343 41 1 -0.0801 -2.0414 -4.5953 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044660253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:16:25 Heat of formation + Delta-G solvation = -111.964687 kcal Electronic energy + Delta-G solvation = -31447.636359 eV Core-core repulsion = 26530.411497 eV Total energy + Delta-G solvation = -4917.224863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.79576 -48.33220 -48.27818 -44.24798 -40.39389 -37.47865 -35.89069 -34.51372 -32.73836 -31.93705 -31.65180 -29.27958 -27.49880 -26.90336 -25.05942 -24.07075 -23.17263 -22.65767 -21.71992 -20.52031 -19.72127 -19.27766 -19.04290 -18.60653 -17.47262 -17.35763 -17.07580 -16.76867 -16.07129 -15.20913 -15.09535 -15.06479 -14.83277 -14.66966 -14.52674 -14.39043 -14.37978 -14.04075 -13.89253 -13.68348 -13.41317 -13.33813 -13.22982 -12.73536 -12.37200 -12.24197 -11.99681 -11.73735 -11.57914 -11.00330 -10.90808 -10.78807 -10.66101 -10.20177 -10.10994 -9.93744 -9.84597 -9.70994 -9.33062 -8.87137 -8.48997 -6.95626 -5.76523 -3.05405 0.34077 1.01454 1.14577 2.12703 2.68970 2.88533 2.97966 3.43310 3.48986 3.51185 3.54338 3.62618 3.99523 4.16268 4.55773 4.58269 4.80276 4.92841 5.12149 5.22131 5.32972 5.45879 5.55554 5.62212 5.74623 5.86593 5.98562 6.08279 6.17675 6.30165 6.36476 6.45273 6.48656 6.55432 6.64363 6.72806 6.93347 7.09547 7.41383 7.70487 8.00106 8.41782 9.53132 10.10695 10.45522 11.46202 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010416 B = 0.003407 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.562562 B = 8216.407116 C =10409.027965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.146 3.854 3 H 0.075 0.925 4 C -0.134 4.134 5 C 0.177 3.823 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.238 4.238 9 H 0.071 0.929 10 C -0.013 4.013 11 N -0.933 5.933 12 Si 0.905 3.095 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.143 4.143 17 C 0.067 3.933 18 N -0.578 5.578 19 C 0.597 3.403 20 O -0.532 6.532 21 C -0.059 4.059 22 C 0.051 3.949 23 O -0.167 6.167 24 C 0.092 3.908 25 C 0.586 3.414 26 F -0.151 7.151 27 F -0.157 7.157 28 F -0.139 7.139 29 N -0.381 5.381 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.383 0.617 36 H 0.254 0.746 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.134 0.866 40 H 0.062 0.938 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.097 0.737 -23.099 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.043 3.957 3 H 0.093 0.907 4 C -0.173 4.173 5 C 0.066 3.934 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.369 4.369 9 H 0.089 0.911 10 C -0.209 4.209 11 N -0.581 5.581 12 Si 0.736 3.264 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.184 4.184 17 C -0.056 4.056 18 N -0.308 5.308 19 C 0.383 3.617 20 O -0.411 6.411 21 C -0.181 4.181 22 C -0.023 4.023 23 O -0.051 6.051 24 C -0.117 4.117 25 C 0.529 3.471 26 F -0.132 7.132 27 F -0.138 7.138 28 F -0.120 7.120 29 N -0.113 5.113 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.150 0.850 40 H 0.080 0.920 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -7.958 0.980 -22.633 24.011 hybrid contribution 0.579 -0.346 0.165 0.694 sum -7.379 0.635 -22.468 23.657 Atomic orbital electron populations 1.22202 0.92827 1.03500 1.01038 1.21412 0.95429 0.95340 0.83516 0.90669 1.22294 0.97820 1.00913 0.96280 1.20215 0.90721 0.95070 0.87363 0.93521 1.42427 1.12817 1.54564 1.26629 1.19283 0.89056 1.22358 1.06186 0.91114 1.24736 0.98118 0.99913 0.98163 1.69675 1.35258 1.33960 1.19217 0.86142 0.84570 0.77295 0.78343 1.20541 1.21912 1.21899 1.22565 1.01684 0.99800 0.94352 1.22933 0.77903 1.01717 1.03049 1.48086 1.08371 1.55219 1.19165 1.16713 0.85287 0.79176 0.80518 1.90880 1.16449 1.57699 1.76071 1.22295 0.89720 1.06302 0.99797 1.25702 0.96962 0.90790 0.88873 1.84400 1.20414 1.55199 1.45038 1.25797 0.88146 1.05182 0.92526 1.16005 0.79107 0.76590 0.75351 1.93341 1.96273 1.35164 1.88389 1.93302 1.96427 1.96255 1.27831 1.93353 1.47646 1.82199 1.88781 1.70607 1.19680 1.07227 1.13788 0.93300 0.90676 0.91802 0.91784 0.90430 0.78308 0.93587 0.90688 0.92388 0.84958 0.91998 0.73673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.61 37.16 0.28 -1.58 16 2 C 0.15 2.08 3.49 -67.60 -0.24 1.84 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 4 C -0.13 -2.24 4.84 -26.61 -0.13 -2.36 16 5 C 0.18 3.44 2.73 -67.89 -0.19 3.26 16 6 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 7 N -0.72 -17.98 5.12 -53.39 -0.27 -18.25 16 8 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 9 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 10 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 11 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 12 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 C -0.14 -2.54 5.66 -26.61 -0.15 -2.69 16 17 C 0.07 0.97 6.32 -3.71 -0.02 0.94 16 18 N -0.58 -8.26 2.97 -166.48 -0.49 -8.76 16 19 C 0.60 8.12 7.47 -12.52 -0.09 8.03 16 20 O -0.53 -7.67 12.49 5.27 0.07 -7.60 16 21 C -0.06 -0.68 6.72 -83.02 -0.56 -1.24 16 22 C 0.05 0.41 11.95 29.96 0.36 0.77 16 23 O -0.17 -1.44 10.70 6.51 0.07 -1.37 16 24 C 0.09 0.93 7.53 -13.07 -0.10 0.83 16 25 C 0.59 5.33 3.57 36.01 0.13 5.46 16 26 F -0.15 -1.45 17.30 2.25 0.04 -1.41 16 27 F -0.16 -1.28 17.28 2.25 0.04 -1.24 16 28 F -0.14 -1.38 17.23 2.25 0.04 -1.34 16 29 N -0.38 -4.58 7.66 -7.65 -0.06 -4.64 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.02 6.59 -51.93 -0.34 0.68 16 32 H 0.06 0.94 6.91 -51.93 -0.36 0.58 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 36 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.13 1.86 3.69 -75.70 -0.28 1.58 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.25 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -31.27 352.26 -5.16 -36.43 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.65 Total: 6.90 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -0.95 Total: 6.11 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.10 Total: -59.06 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.14 Total: -8.98 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.12 Total: -4.00 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.27 -5.16 -36.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044660253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.536 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds