Wall clock time and date at job start Wed Apr 1 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.70233 * 2 1 4 4 C 1.53185 * 109.58878 * 120.35654 * 2 1 3 5 5 C 1.53044 * 109.31376 * 174.42229 * 4 2 1 6 6 H 1.08996 * 109.46078 * 58.64188 * 5 4 2 7 7 N 1.46501 * 109.45919 * 178.61550 * 5 4 2 8 8 C 1.36939 * 119.99923 * 205.00219 * 7 5 4 9 9 H 1.08001 * 119.99794 * 359.72092 * 8 7 5 10 10 C 1.38808 * 120.00134 * 179.72682 * 8 7 5 11 11 N 1.31616 * 119.99942 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00109 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46906 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.46960 * 119.99436 * 12 10 8 15 15 H 1.48490 * 109.46963 * 239.99599 * 12 10 8 16 16 C 1.53038 * 109.53789 * 298.63194 * 5 4 2 17 17 C 1.53195 * 109.31091 * 61.36631 * 16 5 4 18 18 N 1.46927 * 108.77449 * 305.36456 * 17 16 5 19 19 C 1.34780 * 120.63392 * 233.58670 * 18 17 16 20 20 O 1.21607 * 120.00477 * 186.63413 * 19 18 17 21 21 C 1.47427 * 119.99375 * 6.63075 * 19 18 17 22 22 C 1.36089 * 126.44440 * 187.14462 * 21 19 18 23 23 O 1.34262 * 106.94979 * 179.97438 * 22 21 19 24 24 C 1.34047 * 108.22304 * 359.97438 * 23 22 21 25 25 C 1.50706 * 125.37741 * 180.02562 * 24 23 22 26 26 F 1.39897 * 109.47130 * 269.97848 * 25 24 23 27 27 F 1.39899 * 109.46911 * 29.97864 * 25 24 23 28 28 F 1.39905 * 109.46986 * 149.97802 * 25 24 23 29 29 N 1.29943 * 109.24732 * 359.74961 * 24 23 22 30 30 H 1.09001 * 109.46980 * 293.57169 * 1 2 3 31 31 H 1.08996 * 109.47346 * 53.56967 * 1 2 3 32 32 H 1.08997 * 109.47057 * 173.57535 * 1 2 3 33 33 H 1.09003 * 109.49842 * 54.47071 * 4 2 1 34 34 H 1.09000 * 109.52777 * 294.38918 * 4 2 1 35 35 H 0.96997 * 120.00194 * 24.72188 * 7 5 4 36 36 H 0.97006 * 119.99850 * 180.02562 * 11 10 8 37 37 H 1.08997 * 109.49632 * 181.31548 * 16 5 4 38 38 H 1.09002 * 109.49764 * 301.41893 * 16 5 4 39 39 H 1.08999 * 109.59180 * 185.57947 * 17 16 5 40 40 H 1.09000 * 109.70381 * 65.22173 * 17 16 5 41 41 H 1.07997 * 126.52799 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2453 5 6 3.5676 -0.8479 1.1700 6 1 4.0062 0.1473 1.0990 7 7 4.0653 -1.5158 2.3753 8 6 5.3498 -1.2987 2.7973 9 1 5.9973 -0.6387 2.2392 10 6 5.8196 -1.9270 3.9424 11 7 5.0304 -2.7310 4.6228 12 14 7.5721 -1.6315 4.5178 13 1 8.2478 -0.6939 3.5852 14 1 7.5529 -1.0453 5.8820 15 1 8.3087 -2.9205 4.5432 16 6 3.9570 -1.6657 -0.0636 17 6 3.4651 -0.9469 -1.3238 18 7 2.0226 -0.6995 -1.1945 19 6 1.1673 -1.1061 -2.1536 20 8 -0.0058 -0.7913 -2.0955 21 6 1.6543 -1.9325 -3.2731 22 6 0.9451 -2.2999 -4.3750 23 8 1.7628 -3.0440 -5.1367 24 6 2.9484 -3.1316 -4.5172 25 6 4.1504 -3.8787 -5.0352 26 9 4.1156 -5.1976 -4.5701 27 9 4.1334 -3.8768 -6.4341 28 9 5.3179 -3.2550 -4.5821 29 7 2.8994 -2.4658 -3.4025 30 1 -0.3633 0.4110 0.9419 31 1 -0.3634 0.6102 -0.8268 32 1 -0.3633 -1.0212 -0.1150 33 1 1.6030 -1.7253 1.2912 34 1 1.7661 -0.1674 2.1371 35 1 3.4837 -2.1085 2.8765 36 1 5.3586 -3.1698 5.4233 37 1 5.0412 -1.7695 -0.1038 38 1 3.4983 -2.6528 -0.0053 39 1 3.6517 -1.5717 -2.1973 40 1 3.9901 0.0019 -1.4343 41 1 -0.0801 -2.0414 -4.5953 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044660253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:16:24 Heat of formation + Delta-G solvation = -133.050891 kcal Electronic energy + Delta-G solvation = -31448.550726 eV Core-core repulsion = 26530.411497 eV Total energy + Delta-G solvation = -4918.139229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.52447 -49.03767 -49.03235 -45.01355 -41.51642 -38.80463 -36.74205 -36.17184 -33.89365 -33.70453 -32.51747 -31.02048 -28.58734 -27.93307 -26.22682 -25.60106 -24.46945 -23.73153 -22.71590 -21.77501 -20.98980 -20.01063 -19.82328 -19.52698 -19.11961 -18.32008 -18.09336 -17.61381 -17.19941 -16.73565 -16.32449 -15.84577 -15.80655 -15.58037 -15.50219 -15.39913 -15.39024 -15.12504 -15.11050 -15.03024 -14.70979 -14.55766 -14.20427 -14.11456 -13.62518 -13.42631 -13.09468 -13.02055 -12.92131 -12.85722 -12.64348 -12.22666 -12.12136 -12.03812 -11.77997 -11.44040 -11.33155 -10.79591 -10.70321 -10.44773 -9.66104 -9.00209 -7.93444 -5.22166 -0.36999 0.27068 0.28486 1.39046 1.47956 1.48412 1.58378 1.78789 1.98191 2.04747 2.56606 2.83760 2.89768 3.07069 3.37756 3.40358 3.72496 3.72820 3.87728 4.03629 4.07947 4.16755 4.32530 4.33427 4.35685 4.55095 4.62747 4.71267 4.85931 5.00121 5.02087 5.13267 5.20632 5.27918 5.40243 5.48856 5.53462 5.68950 5.79591 6.28251 6.31216 6.94128 7.34425 8.09496 8.33147 9.30424 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010416 B = 0.003407 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.562562 B = 8216.407116 C =10409.027965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.149 3.851 3 H 0.089 0.911 4 C -0.123 4.123 5 C 0.172 3.828 6 H 0.047 0.953 7 N -0.737 5.737 8 C -0.235 4.235 9 H 0.077 0.923 10 C -0.076 4.076 11 N -0.971 5.971 12 Si 0.970 3.030 13 H -0.264 1.264 14 H -0.294 1.294 15 H -0.296 1.296 16 C -0.130 4.130 17 C 0.078 3.922 18 N -0.587 5.587 19 C 0.599 3.401 20 O -0.542 6.542 21 C -0.096 4.096 22 C 0.092 3.908 23 O -0.159 6.159 24 C 0.092 3.908 25 C 0.592 3.408 26 F -0.154 7.154 27 F -0.149 7.149 28 F -0.145 7.145 29 N -0.405 5.405 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.370 0.630 36 H 0.250 0.750 37 H 0.059 0.941 38 H 0.039 0.961 39 H 0.144 0.856 40 H 0.073 0.927 41 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.596 1.631 -25.280 26.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.047 3.953 3 H 0.107 0.893 4 C -0.162 4.162 5 C 0.063 3.937 6 H 0.065 0.935 7 N -0.376 5.376 8 C -0.367 4.367 9 H 0.095 0.905 10 C -0.268 4.268 11 N -0.623 5.623 12 Si 0.799 3.201 13 H -0.189 1.189 14 H -0.222 1.222 15 H -0.223 1.223 16 C -0.171 4.171 17 C -0.045 4.045 18 N -0.317 5.317 19 C 0.386 3.614 20 O -0.421 6.421 21 C -0.218 4.218 22 C 0.018 3.982 23 O -0.042 6.042 24 C -0.118 4.118 25 C 0.536 3.464 26 F -0.135 7.135 27 F -0.130 7.130 28 F -0.126 7.126 29 N -0.137 5.137 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.202 0.798 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.160 0.840 40 H 0.091 0.909 41 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -8.463 1.902 -24.875 26.344 hybrid contribution 0.647 -0.631 0.736 1.165 sum -7.816 1.271 -24.139 25.405 Atomic orbital electron populations 1.22078 0.91860 1.02671 1.01774 1.21372 0.96037 0.95498 0.82412 0.89320 1.22147 0.95561 1.00585 0.97863 1.20447 0.92547 0.94618 0.86053 0.93476 1.42647 1.12053 1.54772 1.28177 1.19661 0.90062 1.21236 1.05726 0.90478 1.25528 1.01990 1.00481 0.98818 1.69831 1.37073 1.35604 1.19749 0.85115 0.80143 0.77052 0.77742 1.18860 1.22164 1.22306 1.22329 1.00542 0.98940 0.95323 1.22814 0.78294 1.02019 1.01348 1.48085 1.08249 1.55836 1.19568 1.16880 0.85002 0.78814 0.80675 1.90869 1.16628 1.58069 1.76528 1.22096 0.90501 1.08362 1.00805 1.26446 0.97458 0.87524 0.86761 1.84453 1.19981 1.55021 1.44710 1.25757 0.88740 1.05093 0.92161 1.15871 0.78675 0.76256 0.75574 1.93335 1.96258 1.35424 1.88509 1.93319 1.96360 1.96197 1.27122 1.93341 1.48023 1.82311 1.88926 1.70375 1.20462 1.08079 1.14798 0.92141 0.90413 0.93244 0.93118 0.90601 0.79822 0.94160 0.92251 0.94229 0.83973 0.90856 0.69708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 7.61 71.98 0.55 -2.67 16 2 C 0.15 4.09 3.49 44.97 0.16 4.25 16 3 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 4 C -0.12 -4.08 4.84 30.67 0.15 -3.94 16 5 C 0.17 6.74 2.73 45.02 0.12 6.86 16 6 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 7 N -0.74 -37.38 5.12 -322.81 -1.65 -39.04 16 8 C -0.24 -13.01 9.93 84.03 0.83 -12.17 16 9 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 10 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 11 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 12 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 13 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 14 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 15 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 16 C -0.13 -4.68 5.66 30.67 0.17 -4.50 16 17 C 0.08 2.20 6.32 86.36 0.55 2.74 16 18 N -0.59 -16.06 2.97 -798.86 -2.37 -18.44 16 19 C 0.60 15.26 7.47 86.66 0.65 15.91 16 20 O -0.54 -14.49 12.49 -4.05 -0.05 -14.54 16 21 C -0.10 -2.02 6.72 40.41 0.27 -1.75 16 22 C 0.09 1.18 11.95 67.32 0.80 1.98 16 23 O -0.16 -2.28 10.70 0.37 0.00 -2.28 16 24 C 0.09 1.69 7.53 88.39 0.67 2.36 16 25 C 0.59 10.00 3.57 71.24 0.25 10.25 16 26 F -0.15 -2.81 17.30 44.97 0.78 -2.03 16 27 F -0.15 -2.17 17.28 44.97 0.78 -1.40 16 28 F -0.14 -2.76 17.23 44.97 0.77 -1.99 16 29 N -0.41 -9.16 7.66 -293.02 -2.24 -11.40 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.96 6.59 -2.39 -0.02 1.95 16 32 H 0.05 1.40 6.91 -2.39 -0.02 1.38 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 2.53 8.14 -2.39 -0.02 2.52 16 35 H 0.37 20.42 7.80 -92.71 -0.72 19.69 16 36 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 37 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.14 3.86 3.69 -49.31 -0.18 3.68 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.29 1.02 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -67.85 352.26 4.17 -63.68 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.21 Total: 23.43 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 5.64 Total: 15.40 kcal Atomic # 7 Polarization: -122.61 SS G_CDS: -5.99 Total: -128.60 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.05 Total: -16.82 kcal Atomic # 9 Polarization: -7.75 SS G_CDS: 2.33 Total: -5.42 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -67.85 4.17 -63.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044660253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.370 kcal (2) G-P(sol) polarization free energy of solvation -67.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds