Wall clock time and date at job start Wed Apr 1 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.58903 * 2 1 4 4 C 1.53199 * 109.58572 * 239.55865 * 2 1 3 5 5 C 1.53037 * 109.31159 * 185.56256 * 4 2 1 6 6 H 1.08996 * 109.46463 * 301.37123 * 5 4 2 7 7 N 1.46499 * 109.45872 * 181.39765 * 5 4 2 8 8 C 1.36944 * 119.99928 * 154.97184 * 7 5 4 9 9 H 1.07997 * 119.99646 * 0.02562 * 8 7 5 10 10 C 1.38810 * 119.99865 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00290 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99584 * 180.02562 * 10 8 7 13 13 H 1.48491 * 109.47621 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47025 * 240.00032 * 12 10 8 15 15 H 1.48509 * 109.46882 * 120.00506 * 12 10 8 16 16 C 1.53041 * 109.52545 * 61.38826 * 5 4 2 17 17 C 1.53194 * 109.31456 * 298.62644 * 16 5 4 18 18 N 1.46919 * 108.77588 * 54.63469 * 17 16 5 19 19 C 1.34771 * 120.63200 * 126.41513 * 18 17 16 20 20 O 1.21612 * 120.00069 * 174.36406 * 19 18 17 21 21 C 1.47425 * 119.99830 * 354.36177 * 19 18 17 22 22 C 1.36087 * 126.44705 * 186.62613 * 21 19 18 23 23 O 1.34256 * 106.94950 * 179.84151 * 22 21 19 24 24 C 1.34047 * 108.22584 * 0.42334 * 23 22 21 25 25 C 1.50700 * 125.37910 * 179.76861 * 24 23 22 26 26 F 1.39901 * 109.47169 * 269.95550 * 25 24 23 27 27 F 1.39893 * 109.47130 * 29.95693 * 25 24 23 28 28 F 1.39902 * 109.47003 * 149.95952 * 25 24 23 29 29 N 1.29937 * 109.24350 * 359.73275 * 24 23 22 30 30 H 1.09000 * 109.47111 * 306.83310 * 1 2 3 31 31 H 1.08999 * 109.47362 * 66.83746 * 1 2 3 32 32 H 1.09001 * 109.47206 * 186.83754 * 1 2 3 33 33 H 1.08995 * 109.48442 * 65.62239 * 4 2 1 34 34 H 1.09005 * 109.50703 * 305.52145 * 4 2 1 35 35 H 0.97001 * 120.00500 * 334.97538 * 7 5 4 36 36 H 0.97000 * 119.99796 * 359.97438 * 11 10 8 37 37 H 1.09000 * 109.50032 * 58.58139 * 16 5 4 38 38 H 1.09007 * 109.49977 * 178.67550 * 16 5 4 39 39 H 1.09000 * 109.59094 * 174.42566 * 17 16 5 40 40 H 1.09002 * 109.58224 * 294.84798 * 17 16 5 41 41 H 1.08001 * 126.52627 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7313 -1.2444 5 6 3.5675 -0.8494 -1.1691 6 1 4.0059 0.1460 -1.0994 7 7 4.0651 -1.5187 -2.3735 8 6 5.3494 -1.3016 -2.7963 9 1 5.9954 -0.6372 -2.2417 10 6 5.8212 -1.9362 -3.9372 11 7 5.0340 -2.7462 -4.6128 12 14 7.5732 -1.6404 -4.5135 13 1 8.2465 -0.6956 -3.5867 14 1 7.5535 -1.0631 -5.8816 15 1 8.3128 -2.9281 -4.5303 16 6 3.9568 -1.6656 0.0655 17 6 3.4650 -0.9453 1.3249 18 7 2.0225 -0.6981 1.1954 19 6 1.1675 -1.1035 2.1550 20 8 -0.0092 -0.8040 2.0870 21 6 1.6586 -1.9101 3.2871 22 6 0.8990 -2.4923 4.2545 23 8 1.7415 -3.1305 5.0825 24 6 2.9917 -2.9369 4.6393 25 6 4.2402 -3.4801 5.2852 26 9 4.7199 -2.5581 6.2216 27 9 3.9454 -4.6872 5.9280 28 9 5.2145 -3.6993 4.3054 29 7 2.9570 -2.2076 3.5645 30 1 -0.3633 0.6161 0.8225 31 1 -0.3634 0.4042 -0.9448 32 1 -0.3634 -1.0204 0.1223 33 1 1.7658 -0.1699 -2.1364 34 1 1.6031 -1.7274 -1.2889 35 1 3.4850 -2.1157 -2.8715 36 1 4.1243 -2.9000 -4.3133 37 1 3.4983 -2.6529 0.0085 38 1 5.0412 -1.7695 0.1059 39 1 3.6518 -1.5690 2.1991 40 1 3.9903 0.0038 1.4317 41 1 -0.1769 -2.4510 4.3390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044660254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:16:30 Heat of formation + Delta-G solvation = -111.222793 kcal Electronic energy + Delta-G solvation = -31462.083878 eV Core-core repulsion = 26544.891186 eV Total energy + Delta-G solvation = -4917.192692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.83411 -48.37025 -48.31525 -44.29054 -40.45329 -37.56194 -35.94445 -34.75016 -32.79862 -32.09616 -31.70078 -29.09484 -27.51277 -26.91097 -25.07009 -23.90011 -23.26563 -22.73355 -21.77131 -20.64034 -19.84279 -19.32468 -19.06791 -18.63164 -17.49422 -17.41497 -17.24718 -16.84032 -16.11852 -15.37749 -15.14743 -15.10545 -14.80640 -14.70916 -14.57731 -14.42457 -14.41764 -14.22426 -14.03673 -13.64645 -13.45885 -13.38208 -13.28380 -13.00129 -12.48507 -12.32917 -12.04508 -11.89572 -11.55421 -11.02308 -10.83754 -10.71204 -10.54333 -10.20148 -10.04603 -9.98499 -9.95960 -9.45771 -9.15568 -8.87322 -8.53816 -7.03438 -6.10221 -3.10231 0.30370 0.97487 1.10601 2.09011 2.64811 2.80422 2.96258 3.50599 3.51804 3.58306 3.58562 3.67600 3.94530 4.12311 4.51388 4.65398 4.75051 4.88809 5.04222 5.13789 5.26476 5.40820 5.49642 5.61073 5.66830 5.80012 5.91579 6.00376 6.08034 6.22583 6.30402 6.34866 6.37651 6.46216 6.59251 6.66025 6.85061 7.00165 7.36061 7.81895 7.95281 8.75644 9.22509 10.08988 10.24132 11.38305 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010549 B = 0.003357 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.681663 B = 8337.780970 C =10475.322960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.146 3.854 3 H 0.076 0.924 4 C -0.135 4.135 5 C 0.182 3.818 6 H 0.049 0.951 7 N -0.736 5.736 8 C -0.330 4.330 9 H 0.065 0.935 10 C -0.045 4.045 11 N -0.945 5.945 12 Si 1.084 2.916 13 H -0.295 1.295 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.144 4.144 17 C 0.063 3.937 18 N -0.578 5.578 19 C 0.597 3.403 20 O -0.532 6.532 21 C -0.059 4.059 22 C 0.052 3.948 23 O -0.166 6.166 24 C 0.093 3.907 25 C 0.585 3.415 26 F -0.152 7.152 27 F -0.156 7.156 28 F -0.137 7.137 29 N -0.383 5.383 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.366 0.634 36 H 0.255 0.745 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.064 0.936 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.945 0.812 23.333 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.043 3.957 3 H 0.094 0.906 4 C -0.174 4.174 5 C 0.072 3.928 6 H 0.067 0.933 7 N -0.378 5.378 8 C -0.461 4.461 9 H 0.083 0.917 10 C -0.243 4.243 11 N -0.591 5.591 12 Si 0.915 3.085 13 H -0.221 1.221 14 H -0.220 1.220 15 H -0.220 1.220 16 C -0.185 4.185 17 C -0.059 4.059 18 N -0.308 5.308 19 C 0.383 3.617 20 O -0.411 6.411 21 C -0.181 4.181 22 C -0.022 4.022 23 O -0.049 6.049 24 C -0.115 4.115 25 C 0.529 3.471 26 F -0.134 7.134 27 F -0.137 7.137 28 F -0.118 7.118 29 N -0.115 5.115 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.199 0.801 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.155 0.845 40 H 0.082 0.918 41 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -6.671 0.887 21.919 22.929 hybrid contribution -1.530 -0.120 1.377 2.062 sum -8.201 0.767 23.296 24.709 Atomic orbital electron populations 1.22203 0.92745 1.03567 1.00987 1.21404 0.95496 0.95358 0.83431 0.90621 1.22308 0.97820 1.00795 0.96466 1.20149 0.90569 0.95121 0.86973 0.93349 1.42445 1.13072 1.54681 1.27553 1.20102 0.89604 1.26168 1.10232 0.91661 1.25749 1.06237 0.97584 0.94681 1.70814 1.08188 1.38506 1.41573 0.83165 0.74250 0.75525 0.75511 1.22102 1.22043 1.22041 1.22577 1.01784 0.99575 0.94611 1.23034 0.77866 1.02101 1.02926 1.48088 1.08421 1.55196 1.19116 1.16713 0.85338 0.79106 0.80550 1.90887 1.16192 1.57488 1.76527 1.22278 0.87664 1.06823 1.01326 1.25701 0.97333 0.91621 0.87545 1.84401 1.15780 1.57529 1.47231 1.25815 0.85789 1.04159 0.95773 1.16009 0.79325 0.75642 0.76109 1.93327 1.88547 1.66034 1.65449 1.93307 1.93136 1.45286 1.81959 1.93369 1.62400 1.94297 1.61773 1.70544 1.20965 1.10180 1.09839 0.90706 0.93344 0.91700 0.90519 0.91919 0.80095 0.93342 0.92709 0.90605 0.84458 0.91765 0.73628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 7.61 37.16 0.28 -1.57 16 2 C 0.15 2.09 3.49 -67.59 -0.24 1.86 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 4 C -0.13 -2.25 4.84 -26.61 -0.13 -2.38 16 5 C 0.18 3.59 2.73 -67.89 -0.19 3.40 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 N -0.74 -18.29 5.12 -53.39 -0.27 -18.57 16 8 C -0.33 -9.20 9.93 -15.06 -0.15 -9.35 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.05 -1.30 5.50 -17.43 -0.10 -1.40 16 11 N -0.95 -29.27 13.70 55.49 0.76 -28.51 16 12 Si 1.08 26.04 29.92 -169.99 -5.09 20.95 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 C -0.14 -2.59 5.66 -26.61 -0.15 -2.74 16 17 C 0.06 0.93 6.33 -3.71 -0.02 0.91 16 18 N -0.58 -8.30 2.97 -166.48 -0.49 -8.80 16 19 C 0.60 8.12 7.49 -12.52 -0.09 8.03 16 20 O -0.53 -7.66 12.46 5.27 0.07 -7.59 16 21 C -0.06 -0.68 6.75 -83.02 -0.56 -1.24 16 22 C 0.05 0.42 11.95 29.96 0.36 0.78 16 23 O -0.17 -1.43 10.70 6.52 0.07 -1.36 16 24 C 0.09 0.93 7.53 -13.08 -0.10 0.83 16 25 C 0.59 5.21 3.57 36.01 0.13 5.34 16 26 F -0.15 -1.31 17.30 2.25 0.04 -1.27 16 27 F -0.16 -1.30 17.28 2.25 0.04 -1.26 16 28 F -0.14 -1.40 17.23 2.25 0.04 -1.36 16 29 N -0.38 -4.54 7.59 -7.65 -0.06 -4.60 16 30 H 0.07 1.02 6.64 -51.93 -0.34 0.68 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.94 6.86 -51.93 -0.36 0.59 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.37 9.48 6.63 -40.82 -0.27 9.20 16 36 H 0.26 7.80 6.77 -40.82 -0.28 7.52 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 39 H 0.14 1.94 3.61 -80.21 -0.29 1.65 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.25 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 350.43 15.07 5.28 5.28 Total: -1.00 -32.25 350.43 -5.12 -37.37 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.55 Total: 7.24 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -0.95 Total: 2.49 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.07 Total: -60.47 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.14 Total: -8.96 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.12 Total: -3.90 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.09 Total: 20.95 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.25 -5.12 -37.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044660254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.853 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds