Wall clock time and date at job start Wed Apr 1 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.70149 * 2 1 4 4 C 1.53188 * 109.58814 * 120.34844 * 2 1 3 5 5 C 1.53038 * 109.31389 * 174.42117 * 4 2 1 6 6 H 1.09007 * 109.44557 * 58.65725 * 5 4 2 7 7 N 1.46504 * 109.46153 * 178.61611 * 5 4 2 8 8 C 1.36931 * 120.00224 * 205.07286 * 7 5 4 9 9 H 1.08001 * 120.00115 * 359.72242 * 8 7 5 10 10 C 1.38817 * 119.99914 * 179.72435 * 8 7 5 11 11 N 1.31622 * 119.99732 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00224 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47233 * 89.99894 * 12 10 8 14 14 H 1.48499 * 109.47343 * 209.99779 * 12 10 8 15 15 H 1.48499 * 109.47107 * 330.00112 * 12 10 8 16 16 C 1.53030 * 109.54175 * 298.63874 * 5 4 2 17 17 C 1.53190 * 109.31512 * 61.36389 * 16 5 4 18 18 N 1.46926 * 109.58760 * 239.64169 * 2 1 3 19 19 C 1.34769 * 120.62914 * 6.62540 * 18 2 1 20 20 O 1.21609 * 120.00421 * 354.22152 * 19 18 2 21 21 C 1.47402 * 119.99685 * 174.22330 * 19 18 2 22 22 C 1.37357 * 128.56836 * 326.55008 * 21 19 18 23 23 O 1.33488 * 106.34457 * 179.91156 * 22 21 19 24 24 N 1.20663 * 113.15599 * 0.39242 * 23 22 21 25 25 C 1.30018 * 112.29967 * 359.75428 * 24 23 22 26 26 C 1.50694 * 127.33091 * 180.02562 * 25 24 23 27 27 F 1.39901 * 109.47269 * 269.99903 * 26 25 24 28 28 F 1.39895 * 109.47571 * 30.00094 * 26 25 24 29 29 F 1.39908 * 109.46944 * 150.00026 * 26 25 24 30 30 H 1.08997 * 109.46986 * 176.34622 * 1 2 3 31 31 H 1.08998 * 109.46841 * 296.34859 * 1 2 3 32 32 H 1.09000 * 109.46997 * 56.34883 * 1 2 3 33 33 H 1.09001 * 109.49467 * 54.47074 * 4 2 1 34 34 H 1.08995 * 109.50056 * 294.37918 * 4 2 1 35 35 H 0.97001 * 119.99514 * 24.79330 * 7 5 4 36 36 H 0.96996 * 120.00147 * 179.97438 * 11 10 8 37 37 H 1.08997 * 109.50326 * 181.31460 * 16 5 4 38 38 H 1.09009 * 109.49968 * 301.41169 * 16 5 4 39 39 H 1.09001 * 109.58888 * 65.15056 * 17 16 5 40 40 H 1.09000 * 109.59127 * 185.43868 * 17 16 5 41 41 H 1.07997 * 126.82493 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7292 1.2455 5 6 3.5675 -0.8478 1.1702 6 1 4.0059 0.1477 1.0993 7 7 4.0652 -1.5155 2.3755 8 6 5.3492 -1.2973 2.7984 9 1 5.9965 -0.6365 2.2408 10 6 5.8190 -1.9255 3.9436 11 7 7.0534 -1.7162 4.3498 12 14 4.6994 -3.0679 4.9084 13 1 4.8406 -4.4527 4.3909 14 1 5.0772 -3.0351 6.3441 15 1 3.2904 -2.6242 4.7570 16 6 3.9570 -1.6656 -0.0633 17 6 3.4651 -0.9470 -1.3236 18 7 2.0226 -0.6996 -1.1944 19 6 1.1675 -1.1063 -2.1535 20 8 -0.0317 -0.9901 -1.9881 21 6 1.6859 -1.6919 -3.4029 22 6 2.8438 -1.3868 -4.0758 23 8 2.8765 -2.1825 -5.1471 24 7 1.9178 -2.9108 -5.2266 25 6 1.0874 -2.7429 -4.2404 26 6 -0.2111 -3.4704 -4.0050 27 9 -1.2539 -2.7766 -4.6283 28 9 -0.1258 -4.7611 -4.5378 29 9 -0.4592 -3.5488 -2.6304 30 1 -0.3633 -1.0256 -0.0655 31 1 -0.3633 0.4561 0.9209 32 1 -0.3633 0.5695 -0.8555 33 1 1.6030 -1.7251 1.2915 34 1 1.7660 -0.1667 2.1368 35 1 3.4839 -2.1090 2.8763 36 1 7.3815 -2.1548 5.1502 37 1 5.0412 -1.7695 -0.1035 38 1 3.4984 -2.6528 -0.0050 39 1 3.9903 0.0020 -1.4317 40 1 3.6542 -1.5707 -2.1973 41 1 3.5820 -0.6509 -3.7932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044686458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:16:52 Heat of formation + Delta-G solvation = -78.671028 kcal Electronic energy + Delta-G solvation = -31956.167150 eV Core-core repulsion = 27040.386009 eV Total energy + Delta-G solvation = -4915.781141 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -50.47205 -48.01729 -47.94364 -45.78258 -40.65524 -37.68453 -35.00928 -34.84378 -33.62167 -32.09175 -31.88447 -29.96239 -27.74039 -27.39801 -25.37853 -24.29634 -23.15461 -22.26640 -22.06562 -20.45158 -19.96303 -19.09385 -19.04070 -18.60193 -18.24976 -17.75745 -17.44725 -16.47435 -16.22756 -15.48228 -15.06334 -14.87118 -14.80021 -14.65342 -14.36406 -14.30943 -14.09216 -14.07283 -14.01319 -13.77787 -13.59411 -13.18844 -12.84131 -12.67705 -12.49054 -12.43050 -12.23174 -12.00702 -11.70197 -11.28391 -11.11779 -11.05333 -11.00873 -10.68573 -10.38199 -10.29538 -10.01757 -9.68381 -9.41149 -9.02314 -8.72360 -7.38353 -5.86117 -3.22601 0.50339 0.73518 1.83744 2.16153 2.51771 2.80458 3.00938 3.24003 3.31845 3.35356 3.40595 3.94449 3.98122 4.05017 4.22617 4.47233 4.51527 4.70365 4.81546 4.85270 5.02008 5.08228 5.23704 5.31171 5.45235 5.56244 5.66762 5.79816 5.89520 5.92594 6.10562 6.19220 6.24010 6.29582 6.54983 6.65186 6.80568 7.14998 7.27448 7.85885 7.88245 8.32832 9.10557 9.83538 10.02686 11.31876 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015496 B = 0.003039 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.526354 B = 9210.624065 C = 9381.693534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.151 3.849 3 H 0.079 0.921 4 C -0.141 4.141 5 C 0.184 3.816 6 H 0.058 0.942 7 N -0.747 5.747 8 C -0.248 4.248 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.277 1.277 16 C -0.152 4.152 17 C 0.093 3.907 18 N -0.591 5.591 19 C 0.587 3.413 20 O -0.510 6.510 21 C -0.202 4.202 22 C -0.001 4.001 23 O 0.134 5.866 24 N -0.295 5.295 25 C -0.043 4.043 26 C 0.561 3.439 27 F -0.160 7.160 28 F -0.166 7.166 29 F -0.149 7.149 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.362 0.638 36 H 0.260 0.740 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.459 2.181 -19.241 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.049 3.951 3 H 0.097 0.903 4 C -0.180 4.180 5 C 0.074 3.926 6 H 0.076 0.924 7 N -0.389 5.389 8 C -0.377 4.377 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.579 5.579 12 Si 0.713 3.287 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.192 4.192 17 C -0.030 4.030 18 N -0.324 5.324 19 C 0.373 3.627 20 O -0.387 6.387 21 C -0.210 4.210 22 C -0.081 4.081 23 O 0.060 5.940 24 N 0.009 4.991 25 C -0.205 4.205 26 C 0.506 3.494 27 F -0.142 7.142 28 F -0.147 7.147 29 F -0.130 7.130 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -11.901 1.488 -20.130 23.432 hybrid contribution -0.754 -0.666 1.511 1.815 sum -12.655 0.822 -18.619 22.528 Atomic orbital electron populations 1.22246 0.92497 1.03972 1.00873 1.21388 0.95688 0.95058 0.82962 0.90295 1.22372 0.97548 1.01198 0.96868 1.20132 0.90733 0.95358 0.86389 0.92410 1.42786 1.13079 1.55220 1.27828 1.19043 0.87450 1.23873 1.07373 0.89133 1.24669 0.96069 1.00031 0.98107 1.69693 1.15124 1.47112 1.25986 0.86577 0.80549 0.81540 0.80007 1.21088 1.21685 1.20293 1.22654 1.02381 0.99896 0.94319 1.22234 0.79308 1.01046 1.00422 1.48052 1.07636 1.56822 1.19877 1.16806 0.86090 0.78451 0.81336 1.90926 1.14522 1.54714 1.78528 1.22359 0.96637 1.01273 1.00724 1.26804 0.98251 0.96501 0.86568 1.84637 1.33929 1.36617 1.38807 1.73727 0.95770 1.10653 1.18987 1.24610 0.98846 1.01563 0.95530 1.16503 0.81345 0.76280 0.75302 1.93270 1.59380 1.79081 1.82434 1.93257 1.96282 1.38946 1.86254 1.93322 1.94479 1.95941 1.29304 0.90867 0.93415 0.91207 0.91678 0.90206 0.80570 0.92968 0.89752 0.92106 0.90362 0.90364 0.74007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 7.59 37.16 0.28 -1.42 16 2 C 0.15 1.80 3.49 -67.60 -0.24 1.56 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.14 -1.99 4.84 -26.61 -0.13 -2.12 16 5 C 0.18 3.04 2.73 -67.89 -0.19 2.85 16 6 H 0.06 0.97 8.08 -51.92 -0.42 0.55 16 7 N -0.75 -16.26 4.93 -53.39 -0.26 -16.52 16 8 C -0.25 -6.51 10.41 -15.06 -0.16 -6.67 16 9 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 10 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 11 N -0.93 -28.17 13.97 55.49 0.78 -27.39 16 12 Si 0.88 21.41 27.73 -169.99 -4.71 16.70 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 16 C -0.15 -2.13 5.66 -26.62 -0.15 -2.28 16 17 C 0.09 0.90 5.45 -3.71 -0.02 0.88 16 18 N -0.59 -6.65 2.97 -166.49 -0.49 -7.15 16 19 C 0.59 7.19 7.13 -12.53 -0.09 7.10 16 20 O -0.51 -7.48 11.17 5.27 0.06 -7.43 16 21 C -0.20 -2.09 5.67 -102.89 -0.58 -2.67 16 22 C 0.00 0.00 9.98 30.41 0.30 0.30 16 23 O 0.13 1.07 11.06 18.66 0.21 1.28 16 24 N -0.30 -3.18 11.98 34.78 0.42 -2.76 16 25 C -0.04 -0.49 6.86 -79.77 -0.55 -1.04 16 26 C 0.56 6.98 3.52 36.00 0.13 7.11 16 27 F -0.16 -2.02 17.30 2.25 0.04 -1.98 16 28 F -0.17 -2.02 17.28 2.25 0.04 -1.98 16 29 F -0.15 -2.05 15.43 2.25 0.03 -2.01 16 30 H 0.07 1.04 6.73 -51.93 -0.35 0.69 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.89 6.76 -51.93 -0.35 0.54 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.36 7.95 5.66 -40.82 -0.23 7.71 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.59 4.46 -51.93 -0.23 0.36 16 41 H 0.24 0.52 6.93 -52.49 -0.36 0.15 16 LS Contribution 345.38 15.07 5.20 5.20 Total: -1.00 -32.25 345.38 -4.68 -36.93 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -4.50 Total: 3.40 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -1.48 Total: 3.71 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.43 Total: -53.82 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: 0.27 Total: -6.15 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 0.11 Total: -5.98 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.71 Total: 16.70 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.25 -4.68 -36.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044686458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.744 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds