Wall clock time and date at job start Wed Apr 1 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.70149 * 2 1 4 4 C 1.53188 * 109.58814 * 120.34844 * 2 1 3 5 5 C 1.53038 * 109.31389 * 174.42117 * 4 2 1 6 6 H 1.09007 * 109.44557 * 58.65725 * 5 4 2 7 7 N 1.46504 * 109.46153 * 178.61611 * 5 4 2 8 8 C 1.36931 * 120.00224 * 205.07286 * 7 5 4 9 9 H 1.08001 * 120.00115 * 359.72242 * 8 7 5 10 10 C 1.38817 * 119.99914 * 179.72435 * 8 7 5 11 11 N 1.31622 * 119.99732 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00224 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47233 * 89.99894 * 12 10 8 14 14 H 1.48499 * 109.47343 * 209.99779 * 12 10 8 15 15 H 1.48499 * 109.47107 * 330.00112 * 12 10 8 16 16 C 1.53030 * 109.54175 * 298.63874 * 5 4 2 17 17 C 1.53190 * 109.31512 * 61.36389 * 16 5 4 18 18 N 1.46926 * 109.58760 * 239.64169 * 2 1 3 19 19 C 1.34769 * 120.62914 * 6.62540 * 18 2 1 20 20 O 1.21609 * 120.00421 * 354.22152 * 19 18 2 21 21 C 1.47402 * 119.99685 * 174.22330 * 19 18 2 22 22 C 1.37357 * 128.56836 * 326.55008 * 21 19 18 23 23 O 1.33488 * 106.34457 * 179.91156 * 22 21 19 24 24 N 1.20663 * 113.15599 * 0.39242 * 23 22 21 25 25 C 1.30018 * 112.29967 * 359.75428 * 24 23 22 26 26 C 1.50694 * 127.33091 * 180.02562 * 25 24 23 27 27 F 1.39901 * 109.47269 * 269.99903 * 26 25 24 28 28 F 1.39895 * 109.47571 * 30.00094 * 26 25 24 29 29 F 1.39908 * 109.46944 * 150.00026 * 26 25 24 30 30 H 1.08997 * 109.46986 * 176.34622 * 1 2 3 31 31 H 1.08998 * 109.46841 * 296.34859 * 1 2 3 32 32 H 1.09000 * 109.46997 * 56.34883 * 1 2 3 33 33 H 1.09001 * 109.49467 * 54.47074 * 4 2 1 34 34 H 1.08995 * 109.50056 * 294.37918 * 4 2 1 35 35 H 0.97001 * 119.99514 * 24.79330 * 7 5 4 36 36 H 0.96996 * 120.00147 * 179.97438 * 11 10 8 37 37 H 1.08997 * 109.50326 * 181.31460 * 16 5 4 38 38 H 1.09009 * 109.49968 * 301.41169 * 16 5 4 39 39 H 1.09001 * 109.58888 * 65.15056 * 17 16 5 40 40 H 1.09000 * 109.59127 * 185.43868 * 17 16 5 41 41 H 1.07997 * 126.82493 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7292 1.2455 5 6 3.5675 -0.8478 1.1702 6 1 4.0059 0.1477 1.0993 7 7 4.0652 -1.5155 2.3755 8 6 5.3492 -1.2973 2.7984 9 1 5.9965 -0.6365 2.2408 10 6 5.8190 -1.9255 3.9436 11 7 7.0534 -1.7162 4.3498 12 14 4.6994 -3.0679 4.9084 13 1 4.8406 -4.4527 4.3909 14 1 5.0772 -3.0351 6.3441 15 1 3.2904 -2.6242 4.7570 16 6 3.9570 -1.6656 -0.0633 17 6 3.4651 -0.9470 -1.3236 18 7 2.0226 -0.6996 -1.1944 19 6 1.1675 -1.1063 -2.1535 20 8 -0.0317 -0.9901 -1.9881 21 6 1.6859 -1.6919 -3.4029 22 6 2.8438 -1.3868 -4.0758 23 8 2.8765 -2.1825 -5.1471 24 7 1.9178 -2.9108 -5.2266 25 6 1.0874 -2.7429 -4.2404 26 6 -0.2111 -3.4704 -4.0050 27 9 -1.2539 -2.7766 -4.6283 28 9 -0.1258 -4.7611 -4.5378 29 9 -0.4592 -3.5488 -2.6304 30 1 -0.3633 -1.0256 -0.0655 31 1 -0.3633 0.4561 0.9209 32 1 -0.3633 0.5695 -0.8555 33 1 1.6030 -1.7251 1.2915 34 1 1.7660 -0.1667 2.1368 35 1 3.4839 -2.1090 2.8763 36 1 7.3815 -2.1548 5.1502 37 1 5.0412 -1.7695 -0.1035 38 1 3.4984 -2.6528 -0.0050 39 1 3.9903 0.0020 -1.4317 40 1 3.6542 -1.5707 -2.1973 41 1 3.5820 -0.6509 -3.7932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044686458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:16:45 Heat of formation + Delta-G solvation = -100.052804 kcal Electronic energy + Delta-G solvation = -31957.094333 eV Core-core repulsion = 27040.386009 eV Total energy + Delta-G solvation = -4916.708325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.44306 -48.98071 -48.94264 -46.53449 -41.60624 -38.83242 -36.33660 -35.76726 -34.54455 -33.79879 -32.76667 -31.51334 -28.72191 -28.43975 -26.31578 -25.63454 -24.41601 -23.24085 -23.04373 -21.69110 -20.97100 -19.98334 -19.94786 -19.63303 -19.48128 -19.04427 -18.38028 -17.30859 -17.16059 -16.71595 -16.47737 -15.90046 -15.85584 -15.79070 -15.56987 -15.34723 -15.09334 -15.08600 -15.06035 -14.91644 -14.72884 -14.56991 -14.17157 -13.79566 -13.71345 -13.41549 -13.22938 -13.04920 -12.99205 -12.76602 -12.59776 -12.10726 -12.04953 -12.02346 -11.95447 -11.77205 -11.37649 -11.08345 -10.85996 -10.37119 -9.67945 -9.28342 -7.99684 -5.31675 -0.14328 -0.04321 0.98811 1.39339 1.39917 1.40256 1.47360 1.74640 1.98288 2.14745 2.40636 2.49813 2.99824 3.16402 3.23208 3.32588 3.50893 3.54888 3.67166 3.84530 3.98172 4.07850 4.21706 4.34090 4.35463 4.56161 4.60545 4.62833 4.73009 4.84881 5.00024 5.06217 5.15858 5.25689 5.42727 5.51223 5.67332 5.81953 6.24889 6.26441 6.61176 6.96830 7.11040 7.88629 8.05056 9.21541 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015496 B = 0.003039 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.526354 B = 9210.624065 C = 9381.693534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.156 3.844 3 H 0.102 0.898 4 C -0.131 4.131 5 C 0.175 3.825 6 H 0.060 0.940 7 N -0.755 5.755 8 C -0.219 4.219 9 H 0.068 0.932 10 C -0.061 4.061 11 N -0.983 5.983 12 Si 0.944 3.056 13 H -0.285 1.285 14 H -0.300 1.300 15 H -0.255 1.255 16 C -0.145 4.145 17 C 0.099 3.901 18 N -0.590 5.590 19 C 0.588 3.412 20 O -0.541 6.541 21 C -0.230 4.230 22 C 0.042 3.958 23 O 0.151 5.849 24 N -0.309 5.309 25 C -0.064 4.064 26 C 0.558 3.442 27 F -0.165 7.165 28 F -0.168 7.168 29 F -0.161 7.161 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.361 0.639 36 H 0.256 0.744 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.599 3.146 -20.915 24.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.054 3.946 3 H 0.120 0.880 4 C -0.171 4.171 5 C 0.068 3.932 6 H 0.078 0.922 7 N -0.397 5.397 8 C -0.350 4.350 9 H 0.086 0.914 10 C -0.253 4.253 11 N -0.634 5.634 12 Si 0.773 3.227 13 H -0.211 1.211 14 H -0.227 1.227 15 H -0.180 1.180 16 C -0.186 4.186 17 C -0.023 4.023 18 N -0.322 5.322 19 C 0.375 3.625 20 O -0.420 6.420 21 C -0.239 4.239 22 C -0.038 4.038 23 O 0.076 5.924 24 N -0.003 5.003 25 C -0.225 4.225 26 C 0.503 3.497 27 F -0.147 7.147 28 F -0.149 7.149 29 F -0.142 7.142 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.193 0.807 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges -12.102 2.447 -21.864 25.109 hybrid contribution -0.693 -0.903 1.927 2.238 sum -12.795 1.544 -19.937 23.740 Atomic orbital electron populations 1.22096 0.92795 1.02487 1.01198 1.21341 0.95331 0.95807 0.82141 0.88032 1.22251 0.95542 1.00937 0.98322 1.20437 0.92195 0.95249 0.85355 0.92230 1.42899 1.11483 1.55663 1.29648 1.19059 0.88680 1.21327 1.05970 0.91369 1.25366 0.97419 1.02627 0.99885 1.69851 1.17282 1.49379 1.26855 0.85573 0.79843 0.79468 0.77854 1.21116 1.22678 1.18025 1.22450 1.01541 0.99243 0.95344 1.22347 0.78361 1.02775 0.98843 1.48056 1.08170 1.56517 1.19442 1.16981 0.85731 0.77871 0.81895 1.90919 1.15920 1.55829 1.79341 1.22194 0.98440 1.02369 1.00874 1.27626 0.97030 0.94932 0.84231 1.84636 1.32740 1.36102 1.38947 1.73744 0.96205 1.11422 1.18927 1.24527 0.98782 1.02609 0.96612 1.16648 0.82003 0.76371 0.74728 1.93251 1.59833 1.79153 1.82431 1.93244 1.96326 1.39171 1.86198 1.93291 1.94652 1.96017 1.30246 0.93196 0.92415 0.91566 0.92900 0.90293 0.80680 0.93553 0.91005 0.93606 0.86907 0.87617 0.69112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 7.59 71.98 0.55 -2.41 16 2 C 0.16 3.30 3.49 44.97 0.16 3.46 16 3 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 4 C -0.13 -3.46 4.84 30.67 0.15 -3.31 16 5 C 0.18 5.45 2.73 45.01 0.12 5.57 16 6 H 0.06 1.86 8.08 -2.38 -0.02 1.84 16 7 N -0.75 -31.98 4.93 -322.82 -1.59 -33.57 16 8 C -0.22 -11.49 10.41 84.04 0.87 -10.62 16 9 H 0.07 3.83 8.06 -2.91 -0.02 3.81 16 10 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 11 N -0.98 -60.67 13.97 21.65 0.30 -60.36 16 12 Si 0.94 44.40 27.73 68.60 1.90 46.30 16 13 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 14 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 15 H -0.26 -10.93 6.52 99.48 0.65 -10.28 16 16 C -0.15 -3.74 5.66 30.67 0.17 -3.56 16 17 C 0.10 1.48 5.45 86.36 0.47 1.95 16 18 N -0.59 -11.39 2.97 -798.90 -2.37 -13.77 16 19 C 0.59 13.05 7.13 86.66 0.62 13.67 16 20 O -0.54 -15.39 11.17 -4.06 -0.05 -15.44 16 21 C -0.23 -4.10 5.67 -18.74 -0.11 -4.21 16 22 C 0.04 0.34 9.98 67.61 0.67 1.02 16 23 O 0.15 1.86 11.06 77.03 0.85 2.71 16 24 N -0.31 -5.96 11.98 -44.77 -0.54 -6.49 16 25 C -0.06 -1.39 6.86 45.15 0.31 -1.08 16 26 C 0.56 13.81 3.52 71.23 0.25 14.06 16 27 F -0.17 -4.20 17.30 44.97 0.78 -3.42 16 28 F -0.17 -4.09 17.28 44.97 0.78 -3.31 16 29 F -0.16 -4.47 15.43 44.97 0.69 -3.77 16 30 H 0.05 1.39 6.73 -2.39 -0.02 1.37 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.59 6.76 -2.39 -0.02 1.57 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.36 15.33 5.66 -92.71 -0.52 14.81 16 36 H 0.26 15.21 8.31 -92.71 -0.77 14.43 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.11 1.03 4.46 -2.39 -0.01 1.02 16 41 H 0.29 -0.87 6.93 -2.91 -0.02 -0.89 16 Total: -1.00 -73.36 345.38 5.99 -67.37 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.53 Total: 12.21 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 4.71 Total: 11.55 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -4.20 Total: -114.19 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.81 Total: -12.73 kcal Atomic # 9 Polarization: -12.76 SS G_CDS: 2.25 Total: -10.51 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.30 kcal Total: -73.36 5.99 -67.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044686458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.687 kcal (2) G-P(sol) polarization free energy of solvation -73.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds