Wall clock time and date at job start Wed Apr 1 2020 06:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58629 * 2 1 4 4 C 1.53199 * 109.58227 * 120.42273 * 2 1 3 5 5 C 1.53044 * 109.30985 * 174.42209 * 4 2 1 6 6 C 1.53042 * 109.54114 * 298.63962 * 5 4 2 7 7 H 1.08995 * 109.49611 * 181.31881 * 6 5 4 8 8 N 1.46496 * 109.51870 * 301.39662 * 6 5 4 9 9 C 1.34781 * 119.99938 * 204.85583 * 8 6 5 10 10 O 1.21613 * 119.99706 * 359.97438 * 9 8 6 11 11 C 1.47418 * 120.00146 * 180.02562 * 9 8 6 12 12 N 1.36062 * 126.45137 * 359.68248 * 11 9 8 13 13 C 1.29932 * 108.48004 * 179.86132 * 12 11 9 14 14 O 1.34053 * 109.24471 * 0.40839 * 13 12 11 15 15 C 1.34261 * 108.22004 * 359.74505 * 14 13 12 16 16 C 1.50701 * 126.52097 * 180.02562 * 15 14 13 17 17 F 1.39902 * 109.47239 * 269.95801 * 16 15 14 18 18 F 1.39906 * 109.47085 * 29.95907 * 16 15 14 19 19 F 1.39897 * 109.47087 * 149.95574 * 16 15 14 20 20 C 1.53190 * 109.31227 * 61.36030 * 6 5 4 21 21 N 1.46916 * 109.58944 * 239.71063 * 2 1 3 22 22 C 1.36935 * 120.63190 * 6.63012 * 21 2 1 23 23 H 1.07999 * 120.00320 * 329.22515 * 22 21 2 24 24 C 1.38822 * 120.00123 * 149.22234 * 22 21 2 25 25 N 1.31620 * 119.99894 * 345.91144 * 24 22 21 26 26 Si 1.86801 * 119.99668 * 165.91084 * 24 22 21 27 27 H 1.48506 * 109.46773 * 90.00394 * 26 24 22 28 28 H 1.48501 * 109.46790 * 210.00013 * 26 24 22 29 29 H 1.48498 * 109.47308 * 330.00413 * 26 24 22 30 30 H 1.08998 * 109.46787 * 180.28463 * 1 2 3 31 31 H 1.08997 * 109.47490 * 300.28455 * 1 2 3 32 32 H 1.08997 * 109.46927 * 60.29105 * 1 2 3 33 33 H 1.09001 * 109.50048 * 294.37654 * 4 2 1 34 34 H 1.08998 * 109.49708 * 54.47428 * 4 2 1 35 35 H 1.09000 * 109.46212 * 178.61275 * 5 4 2 36 36 H 1.09003 * 109.44857 * 58.65051 * 5 4 2 37 37 H 0.97001 * 120.00927 * 24.85456 * 8 6 5 38 38 H 1.08003 * 125.38251 * 180.19168 * 13 12 11 39 39 H 1.09000 * 109.58135 * 185.57547 * 20 6 5 40 40 H 1.09006 * 109.58248 * 65.15897 * 20 6 5 41 41 H 0.96997 * 119.99522 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 1.2446 5 6 3.5675 -0.8494 1.1693 6 6 3.9570 -1.6656 -0.0654 7 1 5.0412 -1.7694 -0.1056 8 7 3.3412 -2.9927 0.0109 9 6 3.8966 -4.0319 -0.6434 10 8 4.9087 -3.8678 -1.2974 11 6 3.2766 -5.3672 -0.5671 12 7 2.1535 -5.6987 0.1258 13 6 1.9189 -6.9644 -0.0512 14 8 2.8693 -7.4837 -0.8412 15 6 3.7233 -6.5017 -1.1716 16 6 4.9438 -6.6312 -2.0461 17 9 6.0529 -6.9489 -1.2548 18 9 4.7372 -7.6448 -2.9881 19 9 5.1743 -5.4201 -2.7073 20 6 3.4651 -0.9453 -1.3247 21 7 2.0226 -0.6981 -1.1952 22 6 1.1539 -1.1101 -2.1702 23 1 0.1442 -1.3918 -1.9101 24 6 1.5709 -1.1656 -3.4932 25 7 2.6876 -0.5712 -3.8567 26 14 0.5473 -2.0841 -4.7573 27 1 -0.4376 -1.1545 -5.3666 28 1 1.4371 -2.6258 -5.8156 29 1 -0.1714 -3.2020 -4.0947 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3634 0.5182 0.8874 32 1 -0.3633 0.5093 -0.8926 33 1 1.7659 -0.1694 2.1367 34 1 1.6029 -1.7269 1.2893 35 1 3.9378 -1.3473 2.0654 36 1 4.0059 0.1461 1.0995 37 1 2.5337 -3.1236 0.5323 38 1 1.0912 -7.5124 0.3742 39 1 3.6520 -1.5691 -2.1988 40 1 3.9904 0.0038 -1.4315 41 1 2.9791 -0.6104 -4.7810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071624203.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:22 Heat of formation + Delta-G solvation = -126.150582 kcal Electronic energy + Delta-G solvation = -32886.293219 eV Core-core repulsion = 27968.453210 eV Total energy + Delta-G solvation = -4917.840009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.16125 -47.75936 -47.53111 -43.81404 -39.51457 -37.61370 -35.21100 -34.18179 -32.72561 -31.70911 -30.69362 -29.88011 -26.82234 -26.04722 -25.00089 -24.07418 -22.58585 -22.16358 -20.97890 -20.38828 -19.13329 -18.74758 -18.66070 -18.27634 -17.80788 -16.97338 -16.39630 -16.01582 -15.52469 -15.03029 -14.63203 -14.56408 -14.44958 -14.15661 -14.08421 -14.01565 -13.91590 -13.68765 -13.64474 -13.41651 -13.16519 -12.85532 -12.74860 -12.46991 -11.96282 -11.62673 -11.25959 -11.16692 -11.14190 -10.96218 -10.86794 -10.70203 -10.38279 -10.32816 -9.95922 -9.80018 -9.66531 -9.50242 -9.44777 -8.44758 -8.43898 -6.56382 -5.73595 -3.18750 0.50419 1.56567 1.84098 2.83088 3.23405 3.37839 3.45281 3.46745 3.50286 3.56754 3.80736 4.18095 4.26380 4.51202 4.64239 4.99003 5.13976 5.31933 5.36096 5.42207 5.51636 5.60136 5.70702 6.01027 6.11499 6.14836 6.33381 6.36457 6.44365 6.50350 6.61925 6.65498 6.83841 6.99585 7.06381 7.13334 7.34940 7.67800 7.85489 7.96201 8.50978 8.55356 9.25429 9.89265 10.46118 11.34498 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010946 B = 0.004879 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.474393 B = 5737.204153 C = 6574.205533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.116 3.884 7 H 0.080 0.920 8 N -0.671 5.671 9 C 0.581 3.419 10 O -0.517 6.517 11 C 0.036 3.964 12 N -0.460 5.460 13 C 0.214 3.786 14 O -0.175 6.175 15 C -0.096 4.096 16 C 0.564 3.436 17 F -0.163 7.163 18 F -0.171 7.171 19 F -0.118 7.118 20 C 0.163 3.837 21 N -0.582 5.582 22 C -0.249 4.249 23 H 0.066 0.934 24 C 0.007 3.993 25 N -0.898 5.898 26 Si 0.893 3.107 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.282 1.282 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.405 0.595 38 H 0.267 0.733 39 H 0.096 0.904 40 H 0.029 0.971 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.603 -11.571 10.848 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.043 0.957 4 C -0.171 4.171 5 C -0.156 4.156 6 C 0.010 3.990 7 H 0.098 0.902 8 N -0.321 5.321 9 C 0.364 3.636 10 O -0.393 6.393 11 C -0.087 4.087 12 N -0.189 5.189 13 C -0.013 4.013 14 O -0.061 6.061 15 C -0.154 4.154 16 C 0.509 3.491 17 F -0.144 7.144 18 F -0.153 7.153 19 F -0.098 7.098 20 C 0.036 3.964 21 N -0.305 5.305 22 C -0.379 4.379 23 H 0.084 0.916 24 C -0.192 4.192 25 N -0.542 5.542 26 Si 0.723 3.277 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.207 1.207 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.241 0.759 38 H 0.283 0.717 39 H 0.114 0.886 40 H 0.047 0.953 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.062 -11.007 10.541 15.277 hybrid contribution -0.658 -1.156 -0.955 1.637 sum 0.404 -12.163 9.587 15.492 Atomic orbital electron populations 1.21789 0.96125 1.01209 1.00156 1.20468 0.92927 0.93614 0.87127 0.95710 1.22081 0.95066 1.00825 0.99140 1.21690 0.97160 1.00162 0.96593 1.21943 0.97109 0.81126 0.98779 0.90203 1.45664 1.29174 1.08068 1.49178 1.16633 0.84258 0.81818 0.80925 1.90923 1.24362 1.83638 1.40421 1.22089 0.93549 0.95885 0.97184 1.70968 1.13578 1.13127 1.21196 1.28464 0.92740 0.89521 0.90598 1.84348 1.31342 1.37541 1.52885 1.23140 0.96915 0.88534 1.06780 1.16487 0.79581 0.75558 0.77499 1.93258 1.54325 1.92715 1.74150 1.93243 1.94828 1.60862 1.66342 1.93510 1.94176 1.41996 1.80135 1.21181 0.83950 0.97121 0.94172 1.44015 1.02614 1.64867 1.19019 1.19033 0.95342 1.37755 0.85771 0.91625 1.25085 0.97666 0.99369 0.97058 1.69963 1.23466 1.44013 1.16715 0.86447 0.79594 0.79849 0.81770 1.21397 1.21566 1.20728 0.92972 0.94457 0.92050 0.92776 0.92548 0.92926 0.90854 0.75874 0.71718 0.88599 0.95315 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.96 37.16 0.30 -2.15 16 2 C 0.17 3.22 3.50 -67.60 -0.24 2.99 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.09 5.21 -26.61 -0.14 -2.23 16 5 C -0.12 -1.83 5.59 -26.69 -0.15 -1.98 16 6 C 0.12 2.17 2.81 -67.81 -0.19 1.98 16 7 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 8 N -0.67 -12.31 4.91 -54.77 -0.27 -12.58 16 9 C 0.58 11.27 7.73 -12.52 -0.10 11.17 16 10 O -0.52 -11.22 12.81 5.27 0.07 -11.15 16 11 C 0.04 0.60 6.96 -83.03 -0.58 0.02 16 12 N -0.46 -6.44 11.06 -11.48 -0.13 -6.56 16 13 C 0.21 2.09 13.19 51.96 0.69 2.78 16 14 O -0.18 -2.12 10.72 6.49 0.07 -2.05 16 15 C -0.10 -1.48 6.75 -35.08 -0.24 -1.71 16 16 C 0.56 8.82 3.34 36.01 0.12 8.94 16 17 F -0.16 -2.41 17.30 2.25 0.04 -2.37 16 18 F -0.17 -2.48 17.30 2.25 0.04 -2.44 16 19 F -0.12 -2.21 13.49 2.25 0.03 -2.18 16 20 C 0.16 3.81 4.87 -3.71 -0.02 3.79 16 21 N -0.58 -13.71 2.90 -164.77 -0.48 -14.18 16 22 C -0.25 -6.56 8.54 -15.06 -0.13 -6.69 16 23 H 0.07 1.70 6.27 -52.49 -0.33 1.38 16 24 C 0.01 0.21 4.97 -17.43 -0.09 0.12 16 25 N -0.90 -26.25 11.21 55.49 0.62 -25.63 16 26 Si 0.89 22.15 29.58 -169.99 -5.03 17.12 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 30 H 0.05 0.95 7.44 -51.93 -0.39 0.57 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.22 7.63 -51.93 -0.40 0.82 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.90 6.41 -51.93 -0.33 0.57 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.40 6.99 6.50 -40.82 -0.27 6.72 16 38 H 0.27 0.87 8.06 -52.48 -0.42 0.44 16 39 H 0.10 2.66 6.17 -51.93 -0.32 2.34 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -32.04 347.23 -5.08 -37.11 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.52 Total: 2.65 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: -0.76 Total: 17.04 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.25 Total: -58.96 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.14 Total: -13.21 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 0.11 Total: -6.99 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.04 -5.08 -37.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071624203.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.036 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds