Wall clock time and date at job start Wed Apr 1 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58439 * 2 1 4 4 C 1.53191 * 109.58976 * 120.28310 * 2 1 3 5 5 C 1.53041 * 109.31254 * 174.56464 * 4 2 1 6 6 C 1.53036 * 109.53965 * 298.63797 * 5 4 2 7 7 H 1.09004 * 109.50258 * 301.37996 * 6 5 4 8 8 N 1.46500 * 109.49913 * 181.31441 * 6 5 4 9 9 C 1.34780 * 120.00236 * 154.99532 * 8 6 5 10 10 O 1.21615 * 119.99733 * 0.02562 * 9 8 6 11 11 C 1.47413 * 120.00253 * 179.97438 * 9 8 6 12 12 N 1.36067 * 126.44927 * 0.03991 * 11 9 8 13 13 C 1.29937 * 108.47983 * 179.97438 * 12 11 9 14 14 O 1.34050 * 109.24267 * 359.97438 * 13 12 11 15 15 C 1.34262 * 108.22662 * 359.72678 * 14 13 12 16 16 C 1.50699 * 126.52884 * 180.26318 * 15 14 13 17 17 F 1.39896 * 109.47233 * 270.19987 * 16 15 14 18 18 F 1.39910 * 109.46748 * 30.19507 * 16 15 14 19 19 F 1.39900 * 109.46992 * 150.19262 * 16 15 14 20 20 C 1.53194 * 109.31549 * 61.36447 * 6 5 4 21 21 N 1.46926 * 109.58537 * 239.72184 * 2 1 3 22 22 C 1.36935 * 120.63603 * 6.46146 * 21 2 1 23 23 H 1.08002 * 119.99660 * 330.34114 * 22 21 2 24 24 C 1.38810 * 120.00726 * 150.33821 * 22 21 2 25 25 N 1.31624 * 119.99291 * 344.65073 * 24 22 21 26 26 Si 1.86796 * 120.00435 * 164.64705 * 24 22 21 27 27 H 1.48498 * 109.46975 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47091 * 119.99903 * 26 24 22 29 29 H 1.48491 * 109.47212 * 240.00025 * 26 24 22 30 30 H 1.08993 * 109.47152 * 299.99270 * 1 2 3 31 31 H 1.08996 * 109.47418 * 59.99956 * 1 2 3 32 32 H 1.09007 * 109.46915 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.49969 * 294.51928 * 4 2 1 34 34 H 1.09001 * 109.49441 * 54.61989 * 4 2 1 35 35 H 1.09001 * 109.45767 * 58.65870 * 5 4 2 36 36 H 1.08998 * 109.45857 * 178.61761 * 5 4 2 37 37 H 0.96998 * 120.00464 * 335.00627 * 8 6 5 38 38 H 1.07999 * 125.37670 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.58713 * 65.15122 * 20 6 5 40 40 H 1.08999 * 109.58856 * 185.43562 * 20 6 5 41 41 H 0.97004 * 119.99680 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1728 6 6 3.9604 -1.6607 -0.0600 7 1 3.5043 -2.6490 -0.0017 8 7 5.4181 -1.7973 -0.1124 9 6 5.9745 -2.8392 -0.7614 10 8 5.2664 -3.6658 -1.3040 11 6 7.4412 -2.9764 -0.8146 12 7 8.3527 -2.1337 -0.2572 13 6 9.5433 -2.5852 -0.5162 14 8 9.4418 -3.7124 -1.2346 15 6 8.1385 -3.9737 -1.4239 16 6 7.5583 -5.1457 -2.1728 17 9 7.4042 -4.8074 -3.5214 18 9 8.4201 -6.2424 -2.0626 19 9 6.3121 -5.4756 -1.6293 20 6 3.4685 -0.9434 -1.3212 21 7 2.0225 -0.6979 -1.1954 22 6 1.1534 -1.1128 -2.1689 23 1 0.1395 -1.3794 -1.9096 24 6 1.5755 -1.1906 -3.4890 25 7 2.6877 -0.5928 -3.8605 26 14 0.5651 -2.1436 -4.7381 27 1 -0.6318 -2.7174 -4.0723 28 1 0.1349 -1.2303 -5.8272 29 1 1.3885 -3.2400 -5.3079 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7639 -0.1655 2.1371 34 1 1.6051 -1.7246 1.2920 35 1 4.0045 0.1529 1.1021 36 1 3.9382 -1.3390 2.0701 37 1 5.9829 -1.1379 0.3202 38 1 10.4684 -2.1254 -0.2015 39 1 3.9919 0.0066 -1.4289 40 1 3.6599 -1.5671 -2.1944 41 1 2.9825 -0.6468 -4.7831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071624205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:26 Heat of formation + Delta-G solvation = -127.843733 kcal Electronic energy + Delta-G solvation = -32071.061479 eV Core-core repulsion = 27153.148049 eV Total energy + Delta-G solvation = -4917.913430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.23939 -47.81971 -47.63578 -43.96825 -39.52725 -37.63588 -35.36594 -34.49725 -32.79573 -31.84394 -30.71765 -29.83179 -26.97512 -25.91628 -25.04983 -24.03431 -22.66506 -22.22769 -20.99032 -20.23128 -19.51092 -18.98754 -18.73416 -18.37118 -17.76689 -17.11443 -16.45007 -16.17761 -15.72474 -15.10689 -14.77650 -14.58937 -14.41702 -14.27179 -14.18169 -14.02002 -13.82643 -13.77538 -13.76746 -13.44840 -13.35376 -12.84693 -12.76294 -12.39710 -11.89599 -11.83465 -11.44107 -11.34535 -11.11277 -10.87880 -10.70364 -10.54639 -10.38511 -10.24130 -10.02099 -9.91197 -9.81601 -9.55230 -9.46063 -8.61246 -8.41113 -6.59384 -5.72401 -3.16991 0.35745 1.43314 1.67158 2.72986 3.07601 3.28327 3.44341 3.45776 3.52514 3.53612 3.66128 4.08136 4.15450 4.45018 4.56944 4.82135 4.99567 5.33558 5.37690 5.45177 5.55107 5.58646 5.68730 5.95955 6.10771 6.27540 6.29061 6.39719 6.44713 6.47586 6.63174 6.71030 6.78824 6.87881 7.05814 7.13959 7.30004 7.72388 7.76342 7.89257 8.36891 8.51836 9.25662 9.90129 10.46055 11.36040 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.003966 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.382150 B = 7058.357049 C = 8555.618637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.115 3.885 7 H 0.087 0.913 8 N -0.693 5.693 9 C 0.579 3.421 10 O -0.501 6.501 11 C 0.030 3.970 12 N -0.464 5.464 13 C 0.216 3.784 14 O -0.174 6.174 15 C -0.091 4.091 16 C 0.564 3.436 17 F -0.157 7.157 18 F -0.172 7.172 19 F -0.122 7.122 20 C 0.168 3.832 21 N -0.583 5.583 22 C -0.253 4.253 23 H 0.071 0.929 24 C 0.007 3.993 25 N -0.900 5.900 26 Si 0.899 3.101 27 H -0.277 1.277 28 H -0.291 1.291 29 H -0.288 1.288 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.402 0.598 38 H 0.268 0.732 39 H 0.019 0.981 40 H 0.094 0.906 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.638 -3.770 10.034 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.010 3.990 7 H 0.105 0.895 8 N -0.343 5.343 9 C 0.361 3.639 10 O -0.375 6.375 11 C -0.093 4.093 12 N -0.193 5.193 13 C -0.011 4.011 14 O -0.059 6.059 15 C -0.148 4.148 16 C 0.509 3.491 17 F -0.138 7.138 18 F -0.153 7.153 19 F -0.102 7.102 20 C 0.041 3.959 21 N -0.306 5.306 22 C -0.382 4.382 23 H 0.089 0.911 24 C -0.192 4.192 25 N -0.543 5.543 26 Si 0.729 3.271 27 H -0.202 1.202 28 H -0.218 1.218 29 H -0.215 1.215 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.236 0.764 38 H 0.284 0.716 39 H 0.037 0.963 40 H 0.112 0.888 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.995 -3.849 9.779 17.502 hybrid contribution 0.370 -0.670 -0.937 1.210 sum 14.365 -4.519 8.842 17.463 Atomic orbital electron populations 1.21801 0.95968 1.01423 1.00195 1.20495 0.93099 0.93595 0.87009 0.95719 1.22049 0.94117 1.01404 0.98990 1.21678 0.97502 0.99723 0.96518 1.22144 0.76716 1.01346 0.98752 0.89538 1.45876 1.09047 1.25530 1.53802 1.16700 0.83439 0.83133 0.80612 1.90996 1.60802 1.41355 1.44385 1.22102 0.96708 0.91801 0.98690 1.70958 0.99187 1.27536 1.21587 1.28478 0.99518 0.82369 0.90779 1.84364 1.24960 1.39797 1.56814 1.23192 0.82696 1.01028 1.07891 1.16483 0.76917 0.78787 0.76961 1.93304 1.95537 1.92042 1.32945 1.93243 1.70230 1.55983 1.95847 1.93473 1.39574 1.92017 1.85173 1.21118 0.83729 0.97007 0.94083 1.44069 1.02462 1.64792 1.19277 1.19166 0.95015 1.38068 0.85949 0.91140 1.25088 0.97775 0.99277 0.97065 1.70010 1.23993 1.43727 1.16618 0.86275 0.79654 0.79700 0.81463 1.20192 1.21822 1.21453 0.94352 0.91990 0.92778 0.92564 0.91996 0.92105 0.92935 0.76359 0.71622 0.96290 0.88813 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.95 37.16 0.30 -2.25 16 2 C 0.16 3.34 3.49 -67.60 -0.24 3.10 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.11 5.37 -26.61 -0.14 -2.25 16 5 C -0.12 -1.86 5.35 -26.69 -0.14 -2.00 16 6 C 0.12 2.22 2.61 -67.81 -0.18 2.04 16 7 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 8 N -0.69 -11.71 5.08 -54.77 -0.28 -11.99 16 9 C 0.58 10.51 7.73 -12.52 -0.10 10.42 16 10 O -0.50 -10.82 12.82 5.26 0.07 -10.75 16 11 C 0.03 0.44 6.96 -83.02 -0.58 -0.14 16 12 N -0.46 -5.47 11.06 -11.48 -0.13 -5.59 16 13 C 0.22 1.69 13.19 51.96 0.69 2.37 16 14 O -0.17 -1.82 10.72 6.50 0.07 -1.75 16 15 C -0.09 -1.25 6.75 -35.08 -0.24 -1.49 16 16 C 0.56 8.30 3.34 36.01 0.12 8.42 16 17 F -0.16 -2.49 17.30 2.25 0.04 -2.45 16 18 F -0.17 -2.22 17.30 2.25 0.04 -2.18 16 19 F -0.12 -2.08 13.49 2.25 0.03 -2.05 16 20 C 0.17 4.04 4.87 -3.55 -0.02 4.02 16 21 N -0.58 -14.42 3.00 -164.55 -0.49 -14.92 16 22 C -0.25 -6.89 8.58 -15.06 -0.13 -7.02 16 23 H 0.07 1.88 6.23 -52.49 -0.33 1.55 16 24 C 0.01 0.20 4.95 -17.43 -0.09 0.11 16 25 N -0.90 -26.71 11.23 55.49 0.62 -26.09 16 26 Si 0.90 22.48 29.58 -169.99 -5.03 17.45 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.25 7.65 -51.93 -0.40 0.85 16 32 H 0.05 1.03 7.42 -51.92 -0.39 0.64 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.40 5.76 8.33 -40.82 -0.34 5.42 16 38 H 0.27 0.35 8.06 -52.49 -0.42 -0.07 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 2.66 6.16 -51.93 -0.32 2.34 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 350.76 15.07 5.29 5.29 Total: -1.00 -33.27 350.76 -5.19 -38.46 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -4.68 Total: 1.21 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: -0.74 Total: 15.35 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.28 Total: -58.59 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.14 Total: -12.50 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.11 Total: -6.67 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.27 -5.19 -38.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071624205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.379 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds