Wall clock time and date at job start Wed Apr 1 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.58777 * 2 1 4 4 C 1.53193 * 109.58420 * 239.72028 * 2 1 3 5 5 C 1.53041 * 109.31412 * 185.57491 * 4 2 1 6 6 C 1.53043 * 109.53852 * 61.36514 * 5 4 2 7 7 H 1.08992 * 109.50030 * 178.65023 * 6 5 4 8 8 N 1.46503 * 109.49484 * 58.58653 * 6 5 4 9 9 C 1.34779 * 119.99930 * 155.00385 * 8 6 5 10 10 O 1.21613 * 120.00086 * 359.97438 * 9 8 6 11 11 C 1.47419 * 119.99776 * 180.02562 * 9 8 6 12 12 C 1.36093 * 126.44360 * 179.97438 * 11 9 8 13 13 O 1.34261 * 106.94515 * 180.02562 * 12 11 9 14 14 C 1.34049 * 108.22839 * 359.97438 * 13 12 11 15 15 C 1.50699 * 125.37473 * 179.97438 * 14 13 12 16 16 F 1.39898 * 109.47384 * 270.02157 * 15 14 13 17 17 F 1.39898 * 109.47474 * 30.02662 * 15 14 13 18 18 F 1.39905 * 109.46926 * 150.02627 * 15 14 13 19 19 N 1.29932 * 109.24286 * 0.02562 * 14 13 12 20 20 C 1.53188 * 109.31130 * 298.63945 * 6 5 4 21 21 N 1.46923 * 109.58882 * 120.43448 * 2 1 3 22 22 C 1.36939 * 120.63434 * 353.36699 * 21 2 1 23 23 H 1.07998 * 119.99262 * 29.02668 * 22 21 2 24 24 C 1.38800 * 120.00539 * 209.02270 * 22 21 2 25 25 N 1.31623 * 120.00236 * 15.03276 * 24 22 21 26 26 Si 1.86800 * 120.00279 * 195.03052 * 24 22 21 27 27 H 1.48501 * 109.46877 * 59.99939 * 26 24 22 28 28 H 1.48499 * 109.47508 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47183 * 300.00409 * 26 24 22 30 30 H 1.08999 * 109.47101 * 180.28355 * 1 2 3 31 31 H 1.09001 * 109.46951 * 300.27272 * 1 2 3 32 32 H 1.08993 * 109.47568 * 60.27739 * 1 2 3 33 33 H 1.09003 * 109.49431 * 65.62718 * 4 2 1 34 34 H 1.09002 * 109.50330 * 305.52652 * 4 2 1 35 35 H 1.09004 * 109.46000 * 301.35067 * 5 4 2 36 36 H 1.08997 * 109.45417 * 181.37858 * 5 4 2 37 37 H 0.96995 * 120.00088 * 334.99836 * 8 6 5 38 38 H 1.07995 * 126.52750 * 0.02562 * 12 11 9 39 39 H 1.09003 * 109.59070 * 174.42103 * 20 6 5 40 40 H 1.09003 * 109.58689 * 294.83959 * 20 6 5 41 41 H 0.96996 * 120.00348 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7277 -1.2464 5 6 3.5674 -0.8464 -1.1714 6 6 3.9569 -1.6658 0.0611 7 1 5.0411 -1.7702 0.1008 8 7 3.3405 -2.9924 -0.0189 9 6 3.8971 -4.0343 0.6301 10 8 4.9112 -3.8733 1.2817 11 6 3.2771 -5.3694 0.5491 12 6 3.7252 -6.5065 1.1477 13 8 2.8707 -7.4870 0.8145 14 6 1.9183 -6.9643 0.0292 15 6 0.7629 -7.7267 -0.5664 16 9 1.1343 -8.2356 -1.8156 17 9 0.4140 -8.7827 0.2823 18 9 -0.3323 -6.8696 -0.7189 19 7 2.1494 -5.6967 -0.1383 20 6 3.4651 -0.9487 1.3223 21 7 2.0225 -0.7012 1.1935 22 6 1.1538 -1.1156 2.1675 23 1 0.1360 -1.3695 1.9108 24 6 1.5814 -1.2094 3.4847 25 7 2.7047 -0.6317 3.8548 26 14 0.5625 -2.1553 4.7324 27 1 0.4328 -3.5687 4.2958 28 1 1.2311 -2.1053 6.0574 29 1 -0.7866 -1.5434 4.8358 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5181 0.8875 32 1 -0.3634 0.5095 -0.8924 33 1 1.7659 -0.1639 -2.1370 34 1 1.6029 -1.7237 -1.2937 35 1 4.0060 0.1488 -1.0992 36 1 3.9375 -1.3422 -2.0688 37 1 2.5319 -3.1209 -0.5388 38 1 4.6013 -6.6020 1.7719 39 1 3.6519 -1.5746 2.1949 40 1 3.9904 0.0001 1.4315 41 1 3.0037 -0.6976 4.7752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071648916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:34 Heat of formation + Delta-G solvation = -131.007190 kcal Electronic energy + Delta-G solvation = -32063.167908 eV Core-core repulsion = 27145.117301 eV Total energy + Delta-G solvation = -4918.050607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.65523 -48.19184 -48.13662 -43.90371 -39.51359 -37.61797 -35.35407 -34.18206 -32.74497 -31.73371 -30.61398 -29.87358 -27.13167 -26.32461 -25.11522 -24.21574 -22.48217 -22.17539 -21.15607 -20.41252 -19.22501 -19.13366 -18.82581 -18.72230 -17.59367 -17.08255 -16.62156 -16.29550 -15.46951 -15.04347 -14.97436 -14.91772 -14.53927 -14.39388 -14.25959 -14.25073 -14.24041 -13.93053 -13.88913 -13.50479 -13.24650 -13.13800 -12.85174 -12.50470 -12.00474 -11.74181 -11.36463 -11.24462 -11.15609 -10.97327 -10.88262 -10.71042 -10.38509 -10.33685 -9.97363 -9.88760 -9.63578 -9.51439 -9.46218 -8.46624 -8.44861 -6.60301 -5.74761 -3.18325 0.64245 1.25277 1.53129 2.36946 2.90276 3.35126 3.37593 3.44194 3.44663 3.54111 3.76177 3.79621 4.37913 4.50187 4.64405 4.91992 5.19685 5.30686 5.35179 5.39623 5.50873 5.54773 5.60121 6.00508 6.11067 6.14130 6.33306 6.36158 6.44099 6.49639 6.62080 6.65009 6.78448 6.88690 7.05436 7.12898 7.33731 7.66657 7.84155 7.97054 8.48940 8.55364 9.24016 9.88225 10.43997 11.33283 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010220 B = 0.004180 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.045411 B = 6696.280552 C = 7200.778553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.116 3.884 7 H 0.079 0.921 8 N -0.676 5.676 9 C 0.598 3.402 10 O -0.537 6.537 11 C -0.053 4.053 12 C 0.047 3.953 13 O -0.171 6.171 14 C 0.085 3.915 15 C 0.589 3.411 16 F -0.155 7.155 17 F -0.157 7.157 18 F -0.140 7.140 19 N -0.384 5.384 20 C 0.161 3.839 21 N -0.582 5.582 22 C -0.247 4.247 23 H 0.068 0.932 24 C 0.005 3.995 25 N -0.901 5.901 26 Si 0.895 3.105 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.405 0.595 38 H 0.247 0.753 39 H 0.098 0.902 40 H 0.028 0.972 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.008 -12.065 -11.223 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.043 0.957 4 C -0.172 4.172 5 C -0.156 4.156 6 C 0.010 3.990 7 H 0.097 0.903 8 N -0.325 5.325 9 C 0.381 3.619 10 O -0.415 6.415 11 C -0.175 4.175 12 C -0.027 4.027 13 O -0.054 6.054 14 C -0.125 4.125 15 C 0.533 3.467 16 F -0.136 7.136 17 F -0.138 7.138 18 F -0.121 7.121 19 N -0.116 5.116 20 C 0.035 3.965 21 N -0.306 5.306 22 C -0.377 4.377 23 H 0.085 0.915 24 C -0.194 4.194 25 N -0.545 5.545 26 Si 0.726 3.274 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.209 1.209 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.241 0.759 38 H 0.263 0.737 39 H 0.116 0.884 40 H 0.046 0.954 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.356 -11.549 -10.964 15.928 hybrid contribution -0.636 -1.062 0.929 1.547 sum -0.280 -12.611 -10.035 16.119 Atomic orbital electron populations 1.21797 0.96092 1.01345 1.00129 1.20460 0.92954 0.93590 0.87093 0.95699 1.22085 0.95062 1.00879 0.99147 1.21691 0.97171 1.00136 0.96630 1.21930 0.97023 0.81255 0.98775 0.90289 1.45703 1.29102 1.08101 1.49568 1.16471 0.83624 0.81574 0.80197 1.90829 1.24797 1.84017 1.41828 1.22256 0.94844 0.97752 1.02671 1.25728 0.94529 0.84321 0.98134 1.84372 1.30692 1.38927 1.51448 1.25385 0.95782 0.90291 1.01031 1.15943 0.78794 0.76202 0.75792 1.93307 1.91332 1.87199 1.41790 1.93297 1.92414 1.57591 1.70529 1.93343 1.53471 1.69958 1.95321 1.70667 1.13251 1.09981 1.17702 1.21207 0.83882 0.97207 0.94247 1.44036 1.02657 1.64685 1.19182 1.19052 0.94635 1.37812 0.86168 0.91473 1.25027 0.97710 0.99711 0.96904 1.69966 1.23163 1.44443 1.16925 0.86481 0.79761 0.80199 0.80988 1.21372 1.21647 1.20904 0.92866 0.92099 0.94393 0.92735 0.92518 0.90881 0.92929 0.75888 0.73717 0.88396 0.95401 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.94 37.16 0.30 -2.19 16 2 C 0.17 3.25 3.50 -67.60 -0.24 3.01 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.12 5.21 -26.61 -0.14 -2.26 16 5 C -0.12 -1.84 5.59 -26.69 -0.15 -1.99 16 6 C 0.12 2.15 2.81 -67.81 -0.19 1.96 16 7 H 0.08 1.47 7.57 -51.93 -0.39 1.07 16 8 N -0.68 -12.33 4.91 -54.77 -0.27 -12.59 16 9 C 0.60 11.14 7.78 -12.52 -0.10 11.04 16 10 O -0.54 -11.18 16.55 5.27 0.09 -11.10 16 11 C -0.05 -0.83 6.99 -83.02 -0.58 -1.41 16 12 C 0.05 0.58 11.95 29.96 0.36 0.94 16 13 O -0.17 -2.08 10.70 6.50 0.07 -2.01 16 14 C 0.08 1.12 7.53 -13.08 -0.10 1.02 16 15 C 0.59 6.56 3.57 36.01 0.13 6.69 16 16 F -0.16 -1.60 17.30 2.25 0.04 -1.56 16 17 F -0.16 -1.65 17.28 2.25 0.04 -1.62 16 18 F -0.14 -1.69 17.23 2.25 0.04 -1.65 16 19 N -0.38 -5.92 10.96 -7.66 -0.08 -6.01 16 20 C 0.16 3.76 4.89 -3.71 -0.02 3.74 16 21 N -0.58 -13.73 2.91 -164.78 -0.48 -14.21 16 22 C -0.25 -6.51 8.61 -15.06 -0.13 -6.64 16 23 H 0.07 1.75 6.20 -52.49 -0.33 1.43 16 24 C 0.01 0.14 4.96 -17.43 -0.09 0.06 16 25 N -0.90 -26.13 11.14 55.49 0.62 -25.51 16 26 Si 0.90 22.08 29.58 -169.99 -5.03 17.05 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 30 H 0.05 0.99 7.40 -51.93 -0.38 0.61 16 31 H 0.06 1.21 7.66 -51.93 -0.40 0.82 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.93 6.40 -51.93 -0.33 0.60 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.40 7.09 6.50 -40.82 -0.27 6.83 16 38 H 0.25 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.10 2.68 6.06 -51.93 -0.31 2.37 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 354.22 15.07 5.34 5.34 Total: -1.00 -30.67 354.22 -5.08 -35.75 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.51 Total: 4.14 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: -0.94 Total: 13.97 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.21 Total: -58.32 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.16 Total: -13.11 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.12 Total: -4.82 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.67 -5.08 -35.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071648916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.260 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds