Wall clock time and date at job start Wed Apr 1 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.58777 * 2 1 4 4 C 1.53193 * 109.58420 * 239.72028 * 2 1 3 5 5 C 1.53041 * 109.31412 * 185.57491 * 4 2 1 6 6 C 1.53043 * 109.53852 * 61.36514 * 5 4 2 7 7 H 1.08992 * 109.50030 * 178.65023 * 6 5 4 8 8 N 1.46503 * 109.49484 * 58.58653 * 6 5 4 9 9 C 1.34779 * 119.99930 * 155.00385 * 8 6 5 10 10 O 1.21613 * 120.00086 * 359.97438 * 9 8 6 11 11 C 1.47419 * 119.99776 * 180.02562 * 9 8 6 12 12 C 1.36093 * 126.44360 * 179.97438 * 11 9 8 13 13 O 1.34261 * 106.94515 * 180.02562 * 12 11 9 14 14 C 1.34049 * 108.22839 * 359.97438 * 13 12 11 15 15 C 1.50699 * 125.37473 * 179.97438 * 14 13 12 16 16 F 1.39898 * 109.47384 * 270.02157 * 15 14 13 17 17 F 1.39898 * 109.47474 * 30.02662 * 15 14 13 18 18 F 1.39905 * 109.46926 * 150.02627 * 15 14 13 19 19 N 1.29932 * 109.24286 * 0.02562 * 14 13 12 20 20 C 1.53188 * 109.31130 * 298.63945 * 6 5 4 21 21 N 1.46923 * 109.58882 * 120.43448 * 2 1 3 22 22 C 1.36939 * 120.63434 * 353.36699 * 21 2 1 23 23 H 1.07998 * 119.99262 * 29.02668 * 22 21 2 24 24 C 1.38800 * 120.00539 * 209.02270 * 22 21 2 25 25 N 1.31623 * 120.00236 * 15.03276 * 24 22 21 26 26 Si 1.86800 * 120.00279 * 195.03052 * 24 22 21 27 27 H 1.48501 * 109.46877 * 59.99939 * 26 24 22 28 28 H 1.48499 * 109.47508 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47183 * 300.00409 * 26 24 22 30 30 H 1.08999 * 109.47101 * 180.28355 * 1 2 3 31 31 H 1.09001 * 109.46951 * 300.27272 * 1 2 3 32 32 H 1.08993 * 109.47568 * 60.27739 * 1 2 3 33 33 H 1.09003 * 109.49431 * 65.62718 * 4 2 1 34 34 H 1.09002 * 109.50330 * 305.52652 * 4 2 1 35 35 H 1.09004 * 109.46000 * 301.35067 * 5 4 2 36 36 H 1.08997 * 109.45417 * 181.37858 * 5 4 2 37 37 H 0.96995 * 120.00088 * 334.99836 * 8 6 5 38 38 H 1.07995 * 126.52750 * 0.02562 * 12 11 9 39 39 H 1.09003 * 109.59070 * 174.42103 * 20 6 5 40 40 H 1.09003 * 109.58689 * 294.83959 * 20 6 5 41 41 H 0.96996 * 120.00348 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7277 -1.2464 5 6 3.5674 -0.8464 -1.1714 6 6 3.9569 -1.6658 0.0611 7 1 5.0411 -1.7702 0.1008 8 7 3.3405 -2.9924 -0.0189 9 6 3.8971 -4.0343 0.6301 10 8 4.9112 -3.8733 1.2817 11 6 3.2771 -5.3694 0.5491 12 6 3.7252 -6.5065 1.1477 13 8 2.8707 -7.4870 0.8145 14 6 1.9183 -6.9643 0.0292 15 6 0.7629 -7.7267 -0.5664 16 9 1.1343 -8.2356 -1.8156 17 9 0.4140 -8.7827 0.2823 18 9 -0.3323 -6.8696 -0.7189 19 7 2.1494 -5.6967 -0.1383 20 6 3.4651 -0.9487 1.3223 21 7 2.0225 -0.7012 1.1935 22 6 1.1538 -1.1156 2.1675 23 1 0.1360 -1.3695 1.9108 24 6 1.5814 -1.2094 3.4847 25 7 2.7047 -0.6317 3.8548 26 14 0.5625 -2.1553 4.7324 27 1 0.4328 -3.5687 4.2958 28 1 1.2311 -2.1053 6.0574 29 1 -0.7866 -1.5434 4.8358 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5181 0.8875 32 1 -0.3634 0.5095 -0.8924 33 1 1.7659 -0.1639 -2.1370 34 1 1.6029 -1.7237 -1.2937 35 1 4.0060 0.1488 -1.0992 36 1 3.9375 -1.3422 -2.0688 37 1 2.5319 -3.1209 -0.5388 38 1 4.6013 -6.6020 1.7719 39 1 3.6519 -1.5746 2.1949 40 1 3.9904 0.0001 1.4315 41 1 3.0037 -0.6976 4.7752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071648916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:33 Heat of formation + Delta-G solvation = -153.158392 kcal Electronic energy + Delta-G solvation = -32064.128457 eV Core-core repulsion = 27145.117301 eV Total energy + Delta-G solvation = -4919.011156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.53867 -49.05159 -49.03522 -44.96656 -41.00069 -39.18382 -36.47747 -35.81807 -34.52015 -32.87445 -32.04418 -31.70288 -28.18957 -27.86363 -26.89132 -25.48926 -23.88844 -23.49102 -22.41797 -21.97124 -20.41326 -20.31292 -20.02357 -19.71403 -18.77765 -18.17641 -18.11971 -17.67678 -17.14768 -16.62916 -16.00497 -15.89230 -15.80790 -15.74999 -15.52556 -15.41040 -15.27864 -15.13176 -15.12593 -14.94619 -14.70456 -14.46349 -14.17544 -14.01709 -13.68012 -13.01132 -12.94925 -12.85749 -12.62855 -12.58380 -12.45185 -12.41811 -12.13432 -12.10261 -11.58552 -11.39415 -11.18463 -11.05994 -10.74381 -10.52280 -10.01529 -8.56438 -7.81884 -5.26200 -0.38372 0.28256 0.34650 1.37763 1.39216 1.40810 1.46550 1.91209 2.05053 2.21941 2.49271 2.84005 2.90190 3.25086 3.32899 3.45783 3.64066 3.84935 4.01079 4.09844 4.18304 4.24222 4.37035 4.48785 4.63997 4.73796 4.81179 4.96354 5.02862 5.07102 5.11432 5.25942 5.32410 5.54896 5.57876 5.64284 5.71756 5.74072 5.78855 6.45035 6.52714 7.12404 7.19735 7.93726 8.43693 9.23042 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010220 B = 0.004180 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.045411 B = 6696.280552 C = 7200.778553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.155 3.845 3 H 0.019 0.981 4 C -0.121 4.121 5 C -0.110 4.110 6 C 0.124 3.876 7 H 0.077 0.923 8 N -0.675 5.675 9 C 0.594 3.406 10 O -0.568 6.568 11 C -0.091 4.091 12 C 0.079 3.921 13 O -0.161 6.161 14 C 0.087 3.913 15 C 0.599 3.401 16 F -0.147 7.147 17 F -0.151 7.151 18 F -0.145 7.145 19 N -0.404 5.404 20 C 0.170 3.830 21 N -0.595 5.595 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.051 4.051 25 N -0.934 5.934 26 Si 0.947 3.053 27 H -0.287 1.287 28 H -0.298 1.298 29 H -0.274 1.274 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.409 0.591 38 H 0.280 0.720 39 H 0.052 0.948 40 H 0.003 0.997 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 -13.377 -13.360 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 H 0.036 0.964 4 C -0.160 4.160 5 C -0.148 4.148 6 C 0.019 3.981 7 H 0.095 0.905 8 N -0.323 5.323 9 C 0.379 3.621 10 O -0.448 6.448 11 C -0.213 4.213 12 C 0.005 3.995 13 O -0.044 6.044 14 C -0.124 4.124 15 C 0.543 3.457 16 F -0.128 7.128 17 F -0.132 7.132 18 F -0.126 7.126 19 N -0.135 5.135 20 C 0.043 3.957 21 N -0.319 5.319 22 C -0.366 4.366 23 H 0.088 0.912 24 C -0.246 4.246 25 N -0.581 5.581 26 Si 0.777 3.223 27 H -0.214 1.214 28 H -0.225 1.225 29 H -0.199 1.199 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.246 0.754 38 H 0.296 0.704 39 H 0.071 0.929 40 H 0.021 0.979 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.531 -12.860 -13.152 18.402 hybrid contribution -0.387 -0.661 1.550 1.729 sum -0.918 -13.521 -11.601 17.839 Atomic orbital electron populations 1.21722 0.94975 1.01098 1.00807 1.20756 0.94008 0.93340 0.86974 0.96374 1.21968 0.95020 1.00774 0.98261 1.21674 0.97057 1.00143 0.95947 1.21678 0.96784 0.81647 0.98020 0.90496 1.45667 1.29244 1.07836 1.49593 1.16835 0.83273 0.82646 0.79304 1.90802 1.26194 1.84828 1.43016 1.21961 0.96330 0.97427 1.05583 1.26347 0.94171 0.83053 0.95926 1.84423 1.30408 1.38509 1.51064 1.25727 0.96123 0.89923 1.00623 1.15712 0.78003 0.76022 0.75940 1.93327 1.91231 1.87004 1.41253 1.93314 1.92267 1.57151 1.70436 1.93336 1.53633 1.70266 1.95352 1.70572 1.13428 1.11147 1.18374 1.20903 0.84029 0.95665 0.95069 1.44244 1.02374 1.65357 1.19896 1.19324 0.94917 1.35779 0.86626 0.91218 1.25650 0.98892 1.01403 0.98691 1.70131 1.24899 1.46604 1.16449 0.85643 0.78836 0.79015 0.78845 1.21432 1.22469 1.19941 0.93443 0.94591 0.90604 0.89137 0.92567 0.90212 0.89720 0.75384 0.70434 0.92928 0.97863 0.94690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 7.94 71.98 0.57 -3.89 16 2 C 0.15 5.86 3.50 44.97 0.16 6.01 16 3 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 4 C -0.12 -3.51 5.21 30.67 0.16 -3.35 16 5 C -0.11 -3.15 5.59 30.62 0.17 -2.98 16 6 C 0.12 4.61 2.81 45.07 0.13 4.74 16 7 H 0.08 2.88 7.57 -2.39 -0.02 2.86 16 8 N -0.67 -24.33 4.91 -445.43 -2.19 -26.52 16 9 C 0.59 22.16 7.78 86.66 0.67 22.84 16 10 O -0.57 -24.09 16.55 -4.07 -0.07 -24.16 16 11 C -0.09 -2.81 6.99 40.41 0.28 -2.53 16 12 C 0.08 1.81 11.95 67.32 0.80 2.62 16 13 O -0.16 -3.54 10.70 0.35 0.00 -3.54 16 14 C 0.09 2.13 7.53 88.39 0.67 2.79 16 15 C 0.60 12.14 3.57 71.24 0.25 12.39 16 16 F -0.15 -2.71 17.30 44.97 0.78 -1.93 16 17 F -0.15 -2.84 17.28 44.97 0.78 -2.06 16 18 F -0.14 -3.25 17.23 44.97 0.78 -2.47 16 19 N -0.40 -11.93 10.96 -293.04 -3.21 -15.14 16 20 C 0.17 8.20 4.89 86.36 0.42 8.62 16 21 N -0.59 -28.34 2.91 -675.25 -1.96 -30.30 16 22 C -0.24 -12.60 8.61 84.03 0.72 -11.87 16 23 H 0.07 3.64 6.20 -2.91 -0.02 3.62 16 24 C -0.05 -2.91 4.96 84.86 0.42 -2.49 16 25 N -0.93 -56.53 11.14 21.65 0.24 -56.29 16 26 Si 0.95 46.35 29.58 68.60 2.03 48.38 16 27 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 29 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 30 H 0.05 1.68 7.40 -2.39 -0.02 1.67 16 31 H 0.03 1.40 7.66 -2.39 -0.02 1.38 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 1.66 6.40 -2.39 -0.02 1.65 16 35 H 0.08 2.20 8.14 -2.38 -0.02 2.19 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.41 13.90 6.50 -92.71 -0.60 13.29 16 38 H 0.28 4.15 8.06 -2.91 -0.02 4.13 16 39 H 0.05 3.03 6.06 -2.39 -0.01 3.01 16 40 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -69.21 354.22 3.11 -66.10 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.51 Total: 15.05 kcal Atomic # 6 Polarization: 27.46 SS G_CDS: 5.43 Total: 32.89 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -7.12 Total: -128.25 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.06 Total: -27.70 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 2.33 Total: -6.46 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -69.21 3.11 -66.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071648916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.063 kcal (2) G-P(sol) polarization free energy of solvation -69.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds