Wall clock time and date at job start Wed Apr 1 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.58868 * 2 1 4 4 C 1.53185 * 109.58790 * 120.28397 * 2 1 3 5 5 C 1.53045 * 109.31365 * 174.56432 * 4 2 1 6 6 C 1.53038 * 109.53659 * 298.63645 * 5 4 2 7 7 H 1.08998 * 109.49478 * 301.37851 * 6 5 4 8 8 N 1.46503 * 109.49379 * 181.31606 * 6 5 4 9 9 C 1.34776 * 119.99685 * 155.27662 * 8 6 5 10 10 O 1.21605 * 120.00458 * 359.72419 * 9 8 6 11 11 C 1.47401 * 119.99998 * 179.72336 * 9 8 6 12 12 C 1.37360 * 128.56578 * 0.02562 * 11 9 8 13 13 O 1.33489 * 106.34754 * 179.97438 * 12 11 9 14 14 N 1.20666 * 113.15193 * 0.02562 * 13 12 11 15 15 C 1.30013 * 112.29963 * 359.72917 * 14 13 12 16 16 C 1.50698 * 127.33326 * 180.27532 * 15 14 13 17 17 F 1.39898 * 109.47176 * 270.14788 * 16 15 14 18 18 F 1.39904 * 109.47094 * 30.15085 * 16 15 14 19 19 F 1.39908 * 109.47330 * 150.14623 * 16 15 14 20 20 C 1.53189 * 109.31232 * 61.36616 * 6 5 4 21 21 N 1.46919 * 108.77755 * 305.36231 * 20 6 5 22 22 C 1.36938 * 120.63173 * 233.63522 * 21 20 6 23 23 H 1.08001 * 119.99717 * 150.88230 * 22 21 20 24 24 C 1.38805 * 119.99938 * 330.88136 * 22 21 20 25 25 N 1.31622 * 120.00102 * 160.74917 * 24 22 21 26 26 Si 1.86797 * 119.99958 * 340.74601 * 24 22 21 27 27 H 1.48503 * 109.47024 * 92.30654 * 26 24 22 28 28 H 1.48507 * 109.47323 * 212.30421 * 26 24 22 29 29 H 1.48506 * 109.47239 * 332.30441 * 26 24 22 30 30 H 1.08999 * 109.47115 * 299.71721 * 1 2 3 31 31 H 1.08997 * 109.46773 * 59.71053 * 1 2 3 32 32 H 1.08996 * 109.46899 * 179.71359 * 1 2 3 33 33 H 1.08995 * 109.49721 * 54.61507 * 4 2 1 34 34 H 1.08999 * 109.52787 * 294.53316 * 4 2 1 35 35 H 1.09003 * 109.45849 * 178.61418 * 5 4 2 36 36 H 1.09000 * 109.45641 * 58.66135 * 5 4 2 37 37 H 0.96997 * 120.00423 * 335.00293 * 8 6 5 38 38 H 1.08001 * 126.82663 * 359.96589 * 12 11 9 39 39 H 1.08997 * 109.58887 * 65.15293 * 20 6 5 40 40 H 1.09006 * 109.58517 * 185.57481 * 20 6 5 41 41 H 0.97000 * 119.99965 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1728 6 6 3.9604 -1.6608 -0.0600 7 1 3.5042 -2.6489 -0.0016 8 7 5.4181 -1.7974 -0.1122 9 6 5.9745 -2.8363 -0.7661 10 8 5.2665 -3.6630 -1.3084 11 6 7.4412 -2.9706 -0.8238 12 6 8.3984 -2.1493 -0.2797 13 8 9.5787 -2.6848 -0.5991 14 7 9.4802 -3.6967 -1.2490 15 6 8.2412 -4.0200 -1.4739 16 6 7.7328 -5.2142 -2.2396 17 9 7.5964 -4.8783 -3.5908 18 9 8.6402 -6.2713 -2.1112 19 9 6.4898 -5.6019 -1.7277 20 6 3.4686 -0.9435 -1.3211 21 7 2.0255 -0.6989 -1.1937 22 6 1.1585 -1.1151 -2.1686 23 1 0.1415 -1.3730 -1.9126 24 6 1.5869 -1.2053 -3.4858 25 7 0.9167 -1.9414 -4.3469 26 14 3.1146 -0.2821 -4.0365 27 1 4.3015 -1.1645 -3.9022 28 1 2.9607 0.1279 -5.4555 29 1 3.2962 0.9242 -3.1895 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3633 -1.0276 -0.0051 33 1 1.6050 -1.7246 1.2920 34 1 1.7639 -0.1660 2.1374 35 1 3.9381 -1.3391 2.0702 36 1 4.0045 0.1529 1.1022 37 1 5.9829 -1.1381 0.3203 38 1 8.2296 -1.2491 0.2928 39 1 3.9920 0.0065 -1.4288 40 1 3.6576 -1.5683 -2.1941 41 1 1.2158 -2.0042 -5.2674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071686025.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:58 Heat of formation + Delta-G solvation = -89.116396 kcal Electronic energy + Delta-G solvation = -32049.681659 eV Core-core repulsion = 27133.447573 eV Total energy + Delta-G solvation = -4916.234086 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.22513 -47.81107 -47.63224 -45.69943 -39.86070 -37.98354 -34.85113 -34.65907 -33.04984 -32.71776 -30.80888 -30.70837 -27.59618 -26.48987 -25.31562 -24.48364 -22.80810 -22.31508 -21.25700 -20.60671 -19.57235 -19.24673 -18.87791 -18.38248 -18.11665 -17.92489 -16.63198 -16.36415 -16.09284 -15.36552 -14.88624 -14.66690 -14.60596 -14.49078 -14.43698 -14.13853 -13.91067 -13.83330 -13.78657 -13.60392 -13.50264 -13.12851 -12.64603 -12.56656 -12.37065 -12.16283 -11.76591 -11.56268 -11.33404 -11.17255 -10.87215 -10.78339 -10.44712 -10.33122 -10.32214 -10.19375 -9.96743 -9.74721 -9.43754 -9.02142 -8.55077 -6.95460 -5.92133 -3.30783 0.54023 0.81546 2.00443 2.32545 2.95928 3.04810 3.09607 3.36220 3.43948 3.46274 3.50127 4.09618 4.16383 4.22977 4.40136 4.55437 4.69533 4.88015 4.91706 5.09605 5.14976 5.36520 5.45451 5.65762 5.82889 5.91528 6.03497 6.15980 6.19458 6.28975 6.35938 6.44715 6.48669 6.56091 6.72608 6.95325 7.05164 7.31869 7.43728 7.97588 8.13464 8.37689 8.94474 9.74379 10.09104 11.23319 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013016 B = 0.003946 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.748088 B = 7093.483865 C = 8091.512983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.030 0.970 4 C -0.128 4.128 5 C -0.116 4.116 6 C 0.126 3.874 7 H 0.097 0.903 8 N -0.713 5.713 9 C 0.577 3.423 10 O -0.493 6.493 11 C -0.199 4.199 12 C -0.002 4.002 13 O 0.132 5.868 14 N -0.297 5.297 15 C -0.038 4.038 16 C 0.556 3.444 17 F -0.162 7.162 18 F -0.170 7.170 19 F -0.135 7.135 20 C 0.120 3.880 21 N -0.596 5.596 22 C -0.263 4.263 23 H 0.093 0.907 24 C 0.030 3.970 25 N -0.904 5.904 26 Si 0.877 3.123 27 H -0.288 1.288 28 H -0.303 1.303 29 H -0.272 1.272 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.393 0.607 38 H 0.240 0.760 39 H 0.024 0.976 40 H 0.080 0.920 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.750 1.824 13.342 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.063 3.937 3 H 0.048 0.952 4 C -0.168 4.168 5 C -0.154 4.154 6 C 0.021 3.979 7 H 0.115 0.885 8 N -0.365 5.365 9 C 0.360 3.640 10 O -0.366 6.366 11 C -0.207 4.207 12 C -0.083 4.083 13 O 0.059 5.941 14 N 0.006 4.994 15 C -0.201 4.201 16 C 0.501 3.499 17 F -0.143 7.143 18 F -0.151 7.151 19 F -0.116 7.116 20 C -0.007 4.007 21 N -0.320 5.320 22 C -0.391 4.391 23 H 0.111 0.889 24 C -0.170 4.170 25 N -0.546 5.546 26 Si 0.708 3.292 27 H -0.215 1.215 28 H -0.231 1.231 29 H -0.197 1.197 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.226 0.774 38 H 0.256 0.744 39 H 0.042 0.958 40 H 0.098 0.902 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.284 0.535 12.375 20.460 hybrid contribution 0.497 0.903 -0.289 1.070 sum 16.782 1.438 12.086 20.731 Atomic orbital electron populations 1.21809 0.95143 1.02083 1.00445 1.20510 0.93804 0.93317 0.86084 0.95238 1.22057 0.93851 1.01902 0.98953 1.21690 0.97832 0.99515 0.96381 1.21926 0.76715 1.01771 0.97461 0.88534 1.45928 1.09024 1.26192 1.55313 1.16779 0.84248 0.82745 0.80218 1.90988 1.61648 1.40735 1.43262 1.22416 0.96820 0.96390 1.05079 1.26533 0.82650 0.99927 0.99226 1.84612 1.31287 1.28047 1.50173 1.73724 1.18559 0.99272 1.07805 1.24716 0.90288 0.99821 1.05280 1.16572 0.76385 0.79867 0.77113 1.93280 1.95671 1.92215 1.33116 1.93239 1.67425 1.58721 1.95702 1.93411 1.40750 1.91048 1.86387 1.21715 0.85749 0.96919 0.96351 1.44356 1.01464 1.65328 1.20881 1.18889 0.95716 1.38967 0.85554 0.88947 1.25295 0.97289 0.98464 0.95903 1.69806 1.41179 1.38924 1.04684 0.87017 0.83986 0.81168 0.77044 1.21546 1.23144 1.19697 0.94069 0.91711 0.92290 0.91483 0.92061 0.92278 0.92024 0.77373 0.74370 0.95796 0.90196 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.95 37.16 0.30 -2.10 16 2 C 0.17 3.06 3.49 -67.60 -0.24 2.83 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -1.85 5.37 -26.61 -0.14 -2.00 16 5 C -0.12 -1.49 5.35 -26.69 -0.14 -1.63 16 6 C 0.13 2.08 2.60 -67.81 -0.18 1.90 16 7 H 0.10 1.88 7.58 -51.93 -0.39 1.48 16 8 N -0.71 -9.25 5.08 -54.77 -0.28 -9.53 16 9 C 0.58 8.95 7.77 -12.53 -0.10 8.86 16 10 O -0.49 -10.18 13.74 5.27 0.07 -10.11 16 11 C -0.20 -2.41 6.41 -102.89 -0.66 -3.07 16 12 C 0.00 -0.02 11.85 30.41 0.36 0.34 16 13 O 0.13 1.14 11.06 18.66 0.21 1.34 16 14 N -0.30 -3.55 11.98 34.78 0.42 -3.13 16 15 C -0.04 -0.52 6.86 -79.77 -0.55 -1.06 16 16 C 0.56 8.48 3.49 36.00 0.13 8.61 16 17 F -0.16 -2.64 17.30 2.25 0.04 -2.60 16 18 F -0.17 -2.38 17.28 2.25 0.04 -2.34 16 19 F -0.14 -2.33 14.28 2.25 0.03 -2.30 16 20 C 0.12 2.54 3.77 -3.72 -0.01 2.52 16 21 N -0.60 -13.57 2.75 -164.78 -0.45 -14.03 16 22 C -0.26 -7.19 9.06 -15.06 -0.14 -7.32 16 23 H 0.09 2.65 6.40 -52.49 -0.34 2.32 16 24 C 0.03 0.88 5.24 -17.43 -0.09 0.79 16 25 N -0.90 -28.13 13.97 55.49 0.78 -27.36 16 26 Si 0.88 22.83 24.34 -169.99 -4.14 18.70 16 27 H -0.29 -7.55 6.63 56.52 0.37 -7.18 16 28 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 29 H -0.27 -6.76 6.63 56.52 0.37 -6.39 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.24 7.67 -51.93 -0.40 0.85 16 32 H 0.06 1.10 7.41 -51.93 -0.38 0.71 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.39 3.16 7.79 -40.82 -0.32 2.84 16 38 H 0.24 0.25 7.68 -52.49 -0.40 -0.16 16 39 H 0.02 0.49 7.03 -51.93 -0.37 0.13 16 40 H 0.08 2.02 4.62 -51.93 -0.24 1.78 16 41 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 344.71 15.07 5.19 5.19 Total: -1.00 -35.46 344.71 -4.12 -39.58 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -4.56 Total: -2.07 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -1.46 Total: 8.65 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.46 Total: -54.05 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.28 Total: -8.77 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 0.11 Total: -7.24 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.14 Total: 18.70 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.46 -4.12 -39.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071686025.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.536 kcal (2) G-P(sol) polarization free energy of solvation -35.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds