Wall clock time and date at job start Wed Apr 1 2020 06:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.58868 * 2 1 4 4 C 1.53185 * 109.58790 * 120.28397 * 2 1 3 5 5 C 1.53045 * 109.31365 * 174.56432 * 4 2 1 6 6 C 1.53038 * 109.53659 * 298.63645 * 5 4 2 7 7 H 1.08998 * 109.49478 * 301.37851 * 6 5 4 8 8 N 1.46503 * 109.49379 * 181.31606 * 6 5 4 9 9 C 1.34776 * 119.99685 * 155.27662 * 8 6 5 10 10 O 1.21605 * 120.00458 * 359.72419 * 9 8 6 11 11 C 1.47401 * 119.99998 * 179.72336 * 9 8 6 12 12 C 1.37360 * 128.56578 * 0.02562 * 11 9 8 13 13 O 1.33489 * 106.34754 * 179.97438 * 12 11 9 14 14 N 1.20666 * 113.15193 * 0.02562 * 13 12 11 15 15 C 1.30013 * 112.29963 * 359.72917 * 14 13 12 16 16 C 1.50698 * 127.33326 * 180.27532 * 15 14 13 17 17 F 1.39898 * 109.47176 * 270.14788 * 16 15 14 18 18 F 1.39904 * 109.47094 * 30.15085 * 16 15 14 19 19 F 1.39908 * 109.47330 * 150.14623 * 16 15 14 20 20 C 1.53189 * 109.31232 * 61.36616 * 6 5 4 21 21 N 1.46919 * 108.77755 * 305.36231 * 20 6 5 22 22 C 1.36938 * 120.63173 * 233.63522 * 21 20 6 23 23 H 1.08001 * 119.99717 * 150.88230 * 22 21 20 24 24 C 1.38805 * 119.99938 * 330.88136 * 22 21 20 25 25 N 1.31622 * 120.00102 * 160.74917 * 24 22 21 26 26 Si 1.86797 * 119.99958 * 340.74601 * 24 22 21 27 27 H 1.48503 * 109.47024 * 92.30654 * 26 24 22 28 28 H 1.48507 * 109.47323 * 212.30421 * 26 24 22 29 29 H 1.48506 * 109.47239 * 332.30441 * 26 24 22 30 30 H 1.08999 * 109.47115 * 299.71721 * 1 2 3 31 31 H 1.08997 * 109.46773 * 59.71053 * 1 2 3 32 32 H 1.08996 * 109.46899 * 179.71359 * 1 2 3 33 33 H 1.08995 * 109.49721 * 54.61507 * 4 2 1 34 34 H 1.08999 * 109.52787 * 294.53316 * 4 2 1 35 35 H 1.09003 * 109.45849 * 178.61418 * 5 4 2 36 36 H 1.09000 * 109.45641 * 58.66135 * 5 4 2 37 37 H 0.96997 * 120.00423 * 335.00293 * 8 6 5 38 38 H 1.08001 * 126.82663 * 359.96589 * 12 11 9 39 39 H 1.08997 * 109.58887 * 65.15293 * 20 6 5 40 40 H 1.09006 * 109.58517 * 185.57481 * 20 6 5 41 41 H 0.97000 * 119.99965 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1728 6 6 3.9604 -1.6608 -0.0600 7 1 3.5042 -2.6489 -0.0016 8 7 5.4181 -1.7974 -0.1122 9 6 5.9745 -2.8363 -0.7661 10 8 5.2665 -3.6630 -1.3084 11 6 7.4412 -2.9706 -0.8238 12 6 8.3984 -2.1493 -0.2797 13 8 9.5787 -2.6848 -0.5991 14 7 9.4802 -3.6967 -1.2490 15 6 8.2412 -4.0200 -1.4739 16 6 7.7328 -5.2142 -2.2396 17 9 7.5964 -4.8783 -3.5908 18 9 8.6402 -6.2713 -2.1112 19 9 6.4898 -5.6019 -1.7277 20 6 3.4686 -0.9435 -1.3211 21 7 2.0255 -0.6989 -1.1937 22 6 1.1585 -1.1151 -2.1686 23 1 0.1415 -1.3730 -1.9126 24 6 1.5869 -1.2053 -3.4858 25 7 0.9167 -1.9414 -4.3469 26 14 3.1146 -0.2821 -4.0365 27 1 4.3015 -1.1645 -3.9022 28 1 2.9607 0.1279 -5.4555 29 1 3.2962 0.9242 -3.1895 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3633 -1.0276 -0.0051 33 1 1.6050 -1.7246 1.2920 34 1 1.7639 -0.1660 2.1374 35 1 3.9381 -1.3391 2.0702 36 1 4.0045 0.1529 1.1022 37 1 5.9829 -1.1381 0.3203 38 1 8.2296 -1.2491 0.2928 39 1 3.9920 0.0065 -1.4288 40 1 3.6576 -1.5683 -2.1941 41 1 1.2158 -2.0042 -5.2674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071686025.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:57 Heat of formation + Delta-G solvation = -116.862559 kcal Electronic energy + Delta-G solvation = -32050.884823 eV Core-core repulsion = 27133.447573 eV Total energy + Delta-G solvation = -4917.437250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.43287 -49.00893 -48.88820 -46.56933 -41.10761 -39.41790 -36.21157 -35.60380 -34.69101 -33.79384 -32.57477 -32.02665 -28.69883 -27.90548 -26.88949 -25.71517 -24.37395 -23.27344 -22.47103 -21.84933 -21.01185 -20.26464 -19.98727 -19.55351 -19.08301 -19.02275 -18.47901 -17.63149 -17.34264 -16.77920 -16.43693 -16.00166 -15.87697 -15.76081 -15.63708 -15.35524 -15.30550 -15.10495 -15.07725 -15.04322 -14.69631 -14.59300 -14.36813 -13.83660 -13.71122 -13.41895 -13.22524 -13.01354 -12.69596 -12.51014 -12.48599 -12.07771 -12.03533 -11.75247 -11.69202 -11.48142 -11.31526 -11.17927 -11.16097 -10.76527 -10.22895 -8.84810 -8.15765 -5.47221 -0.24233 -0.05471 0.99186 1.25367 1.30466 1.40980 1.54010 1.91740 1.99898 2.07881 2.41033 2.43022 2.97486 3.06139 3.14849 3.29787 3.40921 3.51381 3.81102 3.93678 4.06536 4.13796 4.30092 4.38155 4.42447 4.63556 4.70304 4.86379 4.90539 4.99338 5.03495 5.13970 5.21232 5.29244 5.38256 5.53507 5.68477 5.91948 6.19341 6.39896 6.61094 6.94843 7.11073 7.66985 8.04404 9.03919 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013016 B = 0.003946 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.748088 B = 7093.483865 C = 8091.512983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.157 3.843 3 H 0.051 0.949 4 C -0.122 4.122 5 C -0.105 4.105 6 C 0.138 3.862 7 H 0.056 0.944 8 N -0.691 5.691 9 C 0.576 3.424 10 O -0.560 6.560 11 C -0.238 4.238 12 C 0.064 3.936 13 O 0.157 5.843 14 N -0.306 5.306 15 C -0.067 4.067 16 C 0.549 3.451 17 F -0.176 7.176 18 F -0.166 7.166 19 F -0.153 7.153 20 C 0.116 3.884 21 N -0.613 5.613 22 C -0.233 4.233 23 H 0.065 0.935 24 C -0.040 4.040 25 N -0.960 5.960 26 Si 0.941 3.059 27 H -0.299 1.299 28 H -0.316 1.316 29 H -0.244 1.244 30 H 0.084 0.916 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.423 0.577 38 H 0.309 0.691 39 H 0.042 0.958 40 H 0.031 0.969 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.867 5.517 17.695 26.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.053 3.947 3 H 0.068 0.932 4 C -0.162 4.162 5 C -0.143 4.143 6 C 0.032 3.968 7 H 0.074 0.926 8 N -0.344 5.344 9 C 0.361 3.639 10 O -0.438 6.438 11 C -0.247 4.247 12 C -0.016 4.016 13 O 0.081 5.919 14 N 0.001 4.999 15 C -0.228 4.228 16 C 0.494 3.506 17 F -0.157 7.157 18 F -0.148 7.148 19 F -0.134 7.134 20 C -0.010 4.010 21 N -0.339 5.339 22 C -0.363 4.363 23 H 0.083 0.917 24 C -0.234 4.234 25 N -0.607 5.607 26 Si 0.771 3.229 27 H -0.227 1.227 28 H -0.245 1.245 29 H -0.168 1.168 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.262 0.738 38 H 0.324 0.676 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 19.465 4.276 16.809 26.071 hybrid contribution -0.472 -0.234 -1.495 1.585 sum 18.993 4.043 15.313 24.730 Atomic orbital electron populations 1.21770 0.95333 1.00754 1.01244 1.20897 0.93932 0.94268 0.85573 0.93177 1.21984 0.95073 1.00813 0.98292 1.21684 0.96564 1.00733 0.95283 1.21458 0.78465 0.99816 0.97095 0.92560 1.45556 1.07903 1.26288 1.54682 1.17230 0.85503 0.82177 0.78967 1.90970 1.63550 1.43240 1.46053 1.22056 0.95602 0.98388 1.08646 1.27644 0.79901 0.98958 0.95081 1.84616 1.31831 1.26781 1.48675 1.73751 1.17615 1.00334 1.08246 1.24521 0.91445 1.00062 1.06820 1.16832 0.75952 0.80990 0.76850 1.93238 1.95754 1.92363 1.34344 1.93231 1.67036 1.58860 1.95644 1.93369 1.42127 1.91379 1.86546 1.21685 0.85108 0.97157 0.97076 1.44555 1.01713 1.66344 1.21273 1.18888 0.95319 1.35687 0.86447 0.91747 1.25943 1.00633 1.00309 0.96521 1.69956 1.43925 1.42034 1.04790 0.85986 0.80323 0.80459 0.76109 1.22692 1.24500 1.16766 0.89691 0.94480 0.94679 0.93602 0.87773 0.88643 0.88784 0.73793 0.67626 0.93991 0.95112 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 7.95 71.98 0.57 -3.93 16 2 C 0.16 5.27 3.49 44.97 0.16 5.42 16 3 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.12 -3.00 5.37 30.67 0.16 -2.84 16 5 C -0.10 -2.09 5.35 30.62 0.16 -1.93 16 6 C 0.14 4.22 2.60 45.07 0.12 4.34 16 7 H 0.06 2.21 7.58 -2.39 -0.02 2.19 16 8 N -0.69 -15.43 5.08 -445.46 -2.26 -17.69 16 9 C 0.58 17.21 7.77 86.66 0.67 17.89 16 10 O -0.56 -24.28 13.74 -4.05 -0.06 -24.34 16 11 C -0.24 -5.16 6.41 -18.74 -0.12 -5.28 16 12 C 0.06 0.49 11.85 67.61 0.80 1.29 16 13 O 0.16 1.96 11.06 77.01 0.85 2.81 16 14 N -0.31 -6.60 11.98 -44.78 -0.54 -7.13 16 15 C -0.07 -1.78 6.86 45.15 0.31 -1.47 16 16 C 0.55 17.59 3.49 71.24 0.25 17.84 16 17 F -0.18 -6.13 17.30 44.97 0.78 -5.35 16 18 F -0.17 -4.86 17.28 44.97 0.78 -4.09 16 19 F -0.15 -5.70 14.28 44.97 0.64 -5.06 16 20 C 0.12 4.78 3.77 86.36 0.33 5.10 16 21 N -0.61 -27.66 2.75 -675.25 -1.86 -29.52 16 22 C -0.23 -13.26 9.06 84.03 0.76 -12.50 16 23 H 0.06 3.94 6.40 -2.91 -0.02 3.92 16 24 C -0.04 -2.45 5.24 84.86 0.44 -2.00 16 25 N -0.96 -63.75 13.97 21.65 0.30 -63.45 16 26 Si 0.94 49.18 24.34 68.60 1.67 50.85 16 27 H -0.30 -15.95 6.63 99.48 0.66 -15.29 16 28 H -0.32 -16.89 7.11 99.48 0.71 -16.18 16 29 H -0.24 -11.41 6.63 99.48 0.66 -10.75 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 31 H 0.04 1.42 7.67 -2.39 -0.02 1.40 16 32 H 0.03 1.32 7.41 -2.39 -0.02 1.30 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.42 3.99 7.79 -92.71 -0.72 3.26 16 38 H 0.31 -2.35 7.68 -2.91 -0.02 -2.37 16 39 H 0.04 1.57 7.03 -2.39 -0.02 1.56 16 40 H 0.03 1.58 4.62 -2.38 -0.01 1.57 16 41 H 0.26 16.42 8.31 -92.71 -0.77 15.65 16 Total: -1.00 -90.65 344.71 5.22 -85.43 By element: Atomic # 1 Polarization: -4.69 SS G_CDS: 0.29 Total: -4.39 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: 4.62 Total: 21.94 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -4.35 Total: -117.79 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.80 Total: -21.53 kcal Atomic # 9 Polarization: -16.70 SS G_CDS: 2.20 Total: -14.50 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 1.67 Total: 50.85 kcal Total: -90.65 5.22 -85.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071686025.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.435 kcal (2) G-P(sol) polarization free energy of solvation -90.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds