Wall clock time and date at job start Wed Apr 1 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.58718 * 2 1 4 4 C 1.53198 * 109.58578 * 120.27590 * 2 1 3 5 5 C 1.53037 * 109.31287 * 174.56435 * 4 2 1 6 6 C 1.53043 * 109.53912 * 298.63774 * 5 4 2 7 7 H 1.09000 * 109.49764 * 181.34624 * 6 5 4 8 8 N 1.46495 * 109.50024 * 301.41127 * 6 5 4 9 9 C 1.34773 * 120.00276 * 205.00185 * 8 6 5 10 10 O 1.21685 * 119.99836 * 359.97438 * 9 8 6 11 11 C 1.46724 * 120.00023 * 180.02562 * 9 8 6 12 12 O 1.35341 * 126.64243 * 0.02562 * 11 9 8 13 13 C 1.33664 * 107.68317 * 180.02562 * 12 11 9 14 14 N 1.30618 * 109.15486 * 359.97438 * 13 12 11 15 15 C 1.33695 * 108.99385 * 359.73507 * 14 13 12 16 16 C 1.50698 * 126.27063 * 180.27146 * 15 14 13 17 17 F 1.39897 * 109.47055 * 270.18299 * 16 15 14 18 18 F 1.39900 * 109.47555 * 30.18648 * 16 15 14 19 19 F 1.39904 * 109.46834 * 150.18989 * 16 15 14 20 20 C 1.53193 * 109.31236 * 61.36944 * 6 5 4 21 21 N 1.46922 * 109.58925 * 239.71078 * 2 1 3 22 22 C 1.36935 * 120.63351 * 6.46975 * 21 2 1 23 23 H 1.08006 * 119.99723 * 330.40678 * 22 21 2 24 24 C 1.38810 * 120.00726 * 150.40258 * 22 21 2 25 25 N 1.31624 * 119.99291 * 344.62472 * 24 22 21 26 26 Si 1.86796 * 120.00435 * 164.62104 * 24 22 21 27 27 H 1.48503 * 109.46740 * 60.00215 * 26 24 22 28 28 H 1.48497 * 109.46946 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.46995 * 300.00326 * 26 24 22 30 30 H 1.08994 * 109.47182 * 300.00619 * 1 2 3 31 31 H 1.08994 * 109.46790 * 60.00481 * 1 2 3 32 32 H 1.08995 * 109.46862 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.49869 * 294.52312 * 4 2 1 34 34 H 1.09003 * 109.49590 * 54.61683 * 4 2 1 35 35 H 1.09002 * 109.45922 * 58.66135 * 5 4 2 36 36 H 1.09006 * 109.46022 * 178.61645 * 5 4 2 37 37 H 0.97005 * 119.99820 * 25.00095 * 8 6 5 38 38 H 1.07999 * 125.42557 * 179.97438 * 13 12 11 39 39 H 1.08990 * 109.58899 * 65.14475 * 20 6 5 40 40 H 1.09001 * 109.58726 * 185.43879 * 20 6 5 41 41 H 0.97004 * 119.99680 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 1.2465 5 6 3.5678 -0.8433 1.1731 6 6 3.9603 -1.6608 -0.0596 7 1 5.0448 -1.7630 -0.0982 8 7 3.3466 -2.9887 0.0185 9 6 3.9061 -4.0290 -0.6306 10 8 4.9207 -3.8650 -1.2820 11 6 3.2910 -5.3588 -0.5527 12 8 2.1689 -5.6912 0.1269 13 6 1.9527 -6.9969 -0.0602 14 7 2.8932 -7.4817 -0.8261 15 6 3.7359 -6.4976 -1.1561 16 6 4.9563 -6.6249 -2.0310 17 9 6.0663 -6.9401 -1.2400 18 9 4.7515 -7.6392 -2.9725 19 9 5.1841 -5.4134 -2.6926 20 6 3.4686 -0.9436 -1.3209 21 7 2.0226 -0.6981 -1.1952 22 6 1.1535 -1.1130 -2.1688 23 1 0.1392 -1.3785 -1.9097 24 6 1.5761 -1.1923 -3.4886 25 7 2.6888 -0.5955 -3.8603 26 14 0.5657 -2.1461 -4.7371 27 1 -0.7930 -1.5540 -4.8304 28 1 1.2278 -2.0789 -6.0647 29 1 0.4595 -3.5639 -4.3086 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7637 -0.1653 2.1372 34 1 1.6049 -1.7245 1.2924 35 1 4.0045 0.1529 1.1023 36 1 3.9380 -1.3389 2.0706 37 1 2.5376 -3.1193 0.5375 38 1 1.1311 -7.5613 0.3557 39 1 3.9920 0.0063 -1.4286 40 1 3.6599 -1.5674 -2.1940 41 1 2.9839 -0.6505 -4.7827 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071704908.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:03 Heat of formation + Delta-G solvation = -128.253071 kcal Electronic energy + Delta-G solvation = -32928.469501 eV Core-core repulsion = 28010.538321 eV Total energy + Delta-G solvation = -4917.931180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.92270 -47.50446 -47.31652 -43.83325 -39.66254 -37.71926 -35.57417 -34.29076 -32.82142 -31.67175 -30.57183 -29.94068 -26.97890 -26.16118 -25.06664 -24.07469 -22.48618 -22.24908 -21.15735 -20.52127 -19.11847 -18.86355 -18.40987 -18.07944 -17.79847 -17.05901 -16.43633 -16.05853 -15.60659 -15.17251 -14.62976 -14.55968 -14.30547 -14.15335 -14.03725 -13.97138 -13.83485 -13.66862 -13.49295 -13.40760 -13.27806 -12.92674 -12.59145 -12.34024 -12.01623 -11.95637 -11.35523 -11.26112 -11.21721 -11.03637 -10.96186 -10.75337 -10.45755 -10.41235 -10.06398 -9.98476 -9.61147 -9.55429 -9.53690 -8.64084 -8.50492 -6.66250 -5.80339 -3.24736 0.43639 1.93735 2.02507 2.58966 3.08673 3.30849 3.35445 3.41550 3.43974 3.51144 3.86397 4.38471 4.45802 4.49487 4.75509 4.98875 5.09389 5.22049 5.26414 5.32597 5.41431 5.51216 5.58139 5.90234 6.00684 6.04987 6.23742 6.27752 6.33865 6.39353 6.49880 6.51885 6.70344 6.97137 7.00658 7.03775 7.23223 7.54948 7.72214 7.79299 8.27326 8.43402 9.17518 9.81800 10.38358 11.27995 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.004920 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.820427 B = 5689.352087 C = 6525.942353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.132 4.132 5 C -0.119 4.119 6 C 0.116 3.884 7 H 0.083 0.917 8 N -0.675 5.675 9 C 0.588 3.412 10 O -0.492 6.492 11 C -0.005 4.005 12 O -0.174 6.174 13 C 0.204 3.796 14 N -0.459 5.459 15 C -0.045 4.045 16 C 0.552 3.448 17 F -0.170 7.170 18 F -0.170 7.170 19 F -0.133 7.133 20 C 0.160 3.840 21 N -0.582 5.582 22 C -0.255 4.255 23 H 0.067 0.933 24 C 0.009 3.991 25 N -0.896 5.896 26 Si 0.895 3.105 27 H -0.283 1.283 28 H -0.289 1.289 29 H -0.286 1.286 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.401 0.599 38 H 0.266 0.734 39 H 0.031 0.969 40 H 0.097 0.903 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.222 -8.833 12.058 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.044 0.956 4 C -0.171 4.171 5 C -0.157 4.157 6 C 0.011 3.989 7 H 0.101 0.899 8 N -0.325 5.325 9 C 0.369 3.631 10 O -0.368 6.368 11 C -0.064 4.064 12 O -0.058 6.058 13 C -0.022 4.022 14 N -0.186 5.186 15 C -0.170 4.170 16 C 0.497 3.503 17 F -0.152 7.152 18 F -0.151 7.151 19 F -0.114 7.114 20 C 0.033 3.967 21 N -0.306 5.306 22 C -0.384 4.384 23 H 0.085 0.915 24 C -0.191 4.191 25 N -0.540 5.540 26 Si 0.725 3.275 27 H -0.209 1.209 28 H -0.215 1.215 29 H -0.213 1.213 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.237 0.763 38 H 0.282 0.718 39 H 0.049 0.951 40 H 0.115 0.885 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.610 -9.243 11.228 14.555 hybrid contribution -1.053 -0.149 -0.397 1.135 sum -0.443 -9.392 10.831 14.343 Atomic orbital electron populations 1.21789 0.96077 1.01195 1.00234 1.20473 0.92955 0.93710 0.87075 0.95626 1.22084 0.95023 1.00700 0.99311 1.21702 0.97162 1.00298 0.96500 1.21998 0.97257 0.80646 0.98994 0.89874 1.45791 1.28881 1.08422 1.49418 1.16298 0.84523 0.80798 0.81452 1.91012 1.23539 1.82215 1.40060 1.23526 0.87836 0.97410 0.97628 1.84613 1.36664 1.28552 1.56011 1.28397 0.99328 0.78487 0.95987 1.70124 1.03559 1.31234 1.13689 1.21650 0.99947 0.90619 1.04786 1.16727 0.80520 0.75092 0.78005 1.93215 1.54840 1.92864 1.74264 1.93214 1.94913 1.60787 1.66172 1.93453 1.94629 1.42503 1.80843 1.21247 0.83978 0.97342 0.94085 1.44088 1.02530 1.64855 1.19102 1.19003 0.94960 1.38446 0.86024 0.91509 1.25065 0.97727 0.99304 0.96984 1.69957 1.23705 1.43344 1.16955 0.86502 0.79677 0.80182 0.81169 1.20884 1.21492 1.21292 0.94410 0.91998 0.93017 0.92626 0.92770 0.90646 0.92820 0.76285 0.71819 0.95057 0.88501 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 7.95 37.16 0.30 -2.03 16 2 C 0.16 3.05 3.49 -67.60 -0.24 2.81 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -1.93 5.21 -26.61 -0.14 -2.07 16 5 C -0.12 -1.70 5.59 -26.69 -0.15 -1.85 16 6 C 0.12 2.04 2.81 -67.81 -0.19 1.85 16 7 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 8 N -0.68 -11.37 4.91 -54.99 -0.27 -11.64 16 9 C 0.59 10.75 7.70 -12.83 -0.10 10.65 16 10 O -0.49 -10.33 12.80 5.20 0.07 -10.26 16 11 C -0.01 -0.08 7.14 -36.84 -0.26 -0.34 16 12 O -0.17 -2.20 10.57 4.43 0.05 -2.16 16 13 C 0.20 2.06 13.21 52.25 0.69 2.75 16 14 N -0.46 -6.43 11.22 -10.88 -0.12 -6.55 16 15 C -0.05 -0.74 6.49 -82.47 -0.54 -1.28 16 16 C 0.55 9.44 3.34 36.00 0.12 9.56 16 17 F -0.17 -2.77 17.30 2.25 0.04 -2.73 16 18 F -0.17 -2.81 17.27 2.25 0.04 -2.77 16 19 F -0.13 -2.61 13.48 2.25 0.03 -2.58 16 20 C 0.16 3.60 4.90 -3.55 -0.02 3.58 16 21 N -0.58 -13.16 2.92 -164.55 -0.48 -13.64 16 22 C -0.25 -6.49 8.58 -15.06 -0.13 -6.62 16 23 H 0.07 1.67 6.23 -52.48 -0.33 1.34 16 24 C 0.01 0.24 4.95 -17.43 -0.09 0.15 16 25 N -0.90 -25.69 11.23 55.49 0.62 -25.07 16 26 Si 0.89 21.80 29.58 -169.99 -5.03 16.78 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.18 7.64 -51.93 -0.40 0.79 16 32 H 0.05 0.89 7.42 -51.93 -0.39 0.50 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.78 6.40 -51.93 -0.33 0.45 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.40 6.07 6.57 -40.82 -0.27 5.81 16 38 H 0.27 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.10 2.59 6.16 -51.93 -0.32 2.27 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 347.16 15.07 5.23 5.23 Total: -1.00 -31.55 347.16 -5.08 -36.63 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.52 Total: 1.60 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: -0.74 Total: 17.16 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.25 Total: -56.90 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.11 Total: -12.42 kcal Atomic # 9 Polarization: -8.19 SS G_CDS: 0.11 Total: -8.08 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.55 -5.08 -36.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071704908.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.619 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds