Wall clock time and date at job start Wed Apr 1 2020 06:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.88536 * 2 1 4 4 C 1.54905 * 111.00767 * 236.12204 * 2 1 3 5 5 N 1.47425 * 104.93059 * 204.86435 * 4 2 1 6 6 C 1.36939 * 125.64961 * 204.15718 * 5 4 2 7 7 H 1.07998 * 120.00321 * 161.51259 * 6 5 4 8 8 C 1.38813 * 119.99574 * 341.51537 * 6 5 4 9 9 N 1.31625 * 119.99502 * 157.60956 * 8 6 5 10 10 Si 1.86792 * 120.00162 * 337.61051 * 8 6 5 11 11 H 1.48498 * 109.47196 * 84.54220 * 10 8 6 12 12 H 1.48510 * 109.47106 * 204.53762 * 10 8 6 13 13 H 1.48492 * 109.47267 * 324.53766 * 10 8 6 14 14 C 1.47289 * 108.55940 * 24.14922 * 5 4 2 15 15 C 1.54326 * 107.30567 * 358.92931 * 14 5 4 16 16 H 1.09001 * 110.71993 * 96.17858 * 15 14 5 17 17 C 1.52996 * 110.71925 * 219.44929 * 15 14 5 18 18 N 1.46494 * 109.47421 * 288.52034 * 17 15 14 19 19 C 1.34780 * 119.99906 * 179.97438 * 18 17 15 20 20 O 1.21613 * 120.00301 * 0.02562 * 19 18 17 21 21 C 1.47421 * 119.99938 * 180.02562 * 19 18 17 22 22 C 1.36085 * 126.44940 * 179.71242 * 21 19 18 23 23 O 1.34264 * 106.94946 * 179.90034 * 22 21 19 24 24 C 1.34049 * 108.22370 * 0.37106 * 23 22 21 25 25 C 1.50703 * 125.37501 * 179.79991 * 24 23 22 26 26 F 1.39899 * 109.47249 * 269.96015 * 25 24 23 27 27 F 1.39904 * 109.46938 * 29.95817 * 25 24 23 28 28 F 1.39901 * 109.46792 * 149.95711 * 25 24 23 29 29 N 1.29929 * 109.24617 * 359.76459 * 24 23 22 30 30 H 1.09003 * 109.46789 * 182.42377 * 1 2 3 31 31 H 1.08990 * 109.47448 * 302.42482 * 1 2 3 32 32 H 1.08995 * 109.46907 * 62.43046 * 1 2 3 33 33 H 1.09001 * 110.36832 * 323.75117 * 4 2 1 34 34 H 1.08996 * 110.36854 * 85.96704 * 4 2 1 35 35 H 0.97002 * 119.99552 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.86033 * 239.50806 * 14 5 4 37 37 H 1.09005 * 109.87285 * 118.35841 * 14 5 4 38 38 H 1.09000 * 109.47179 * 48.52851 * 17 15 14 39 39 H 1.09005 * 109.47026 * 168.52472 * 17 15 14 40 40 H 0.96996 * 119.99931 * 0.02562 * 18 17 15 41 41 H 1.08002 * 126.52743 * 0.03847 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8061 -1.2006 5 7 3.4280 -1.2427 -0.7764 6 6 4.4638 -1.5645 -1.6124 7 1 5.4759 -1.5828 -1.2360 8 6 4.2128 -1.8669 -2.9438 9 7 5.1706 -1.7446 -3.8382 10 14 2.5159 -2.4474 -3.4658 11 1 1.6424 -1.2708 -3.7063 12 1 2.6276 -3.2443 -4.7140 13 1 1.9286 -3.2888 -2.3924 14 6 3.4675 -1.2743 0.6956 15 6 2.0862 -0.8083 1.2020 16 1 1.4468 -1.6637 1.4203 17 6 2.2350 0.0866 2.4339 18 7 2.6467 -0.7261 3.5811 19 6 2.8410 -0.1466 4.7824 20 8 2.6741 1.0507 4.9141 21 6 3.2559 -0.9644 5.9367 22 6 3.4931 -0.5180 7.2002 23 8 3.8432 -1.5868 7.9336 24 6 3.8297 -2.6647 7.1368 25 6 4.1664 -4.0700 7.5643 26 9 5.5361 -4.2950 7.3899 27 9 3.8340 -4.2395 8.9127 28 9 3.4416 -4.9800 6.7874 29 7 3.4796 -2.3066 5.9378 30 1 -0.3633 -1.0268 0.0435 31 1 -0.3634 0.5510 0.8673 32 1 -0.3633 0.4756 -0.9109 33 1 1.4520 -1.6698 -1.4031 34 1 2.1542 -0.1716 -2.0842 35 1 4.9954 -1.9563 -4.7685 36 1 4.2426 -0.6000 1.0598 37 1 3.6650 -2.2898 1.0393 38 1 2.9888 0.8496 2.2398 39 1 1.2806 0.5660 2.6522 40 1 2.7802 -1.6810 3.4760 41 1 3.4126 0.5014 7.5475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092780211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:57 Heat of formation + Delta-G solvation = -129.805426 kcal Electronic energy + Delta-G solvation = -30241.600295 eV Core-core repulsion = 25323.601800 eV Total energy + Delta-G solvation = -4917.998495 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.89125 -48.42379 -48.37869 -44.31720 -39.89773 -38.37223 -35.78352 -34.94927 -33.05480 -32.07867 -31.12798 -29.97110 -27.47591 -26.40254 -25.86953 -24.44891 -22.90793 -22.42309 -21.30572 -20.40925 -20.01217 -19.37383 -19.33588 -19.02820 -17.92169 -17.47083 -17.04229 -16.77840 -16.18524 -15.58138 -15.23550 -15.18341 -15.11799 -14.89062 -14.76620 -14.53028 -14.48737 -14.47745 -13.98781 -13.78271 -13.49130 -13.30343 -12.99290 -12.95744 -12.62853 -12.26502 -12.07470 -11.75818 -11.52516 -11.41727 -11.17396 -10.92879 -10.63958 -10.59267 -10.32709 -10.07149 -9.98321 -9.86036 -9.44239 -9.21200 -8.68389 -7.04859 -5.94730 -3.25019 0.24047 0.92298 1.05235 2.02763 2.61024 2.82217 2.86105 3.34093 3.45783 3.47736 3.49873 3.53287 3.92221 4.12877 4.49951 4.54529 4.75699 4.79432 4.92056 4.95113 5.04822 5.09930 5.41012 5.45784 5.58146 5.70033 5.83995 5.87135 5.99742 6.05702 6.16386 6.23049 6.35155 6.42791 6.50229 6.62851 6.72904 6.78359 7.25864 7.70273 7.85074 8.31165 8.83152 9.68642 10.17527 11.21500 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.002516 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.906174 B =11125.781311 C =12270.634129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.083 0.917 4 C 0.116 3.884 5 N -0.609 5.609 6 C -0.242 4.242 7 H 0.092 0.908 8 C 0.021 3.979 9 N -0.909 5.909 10 Si 0.883 3.117 11 H -0.285 1.285 12 H -0.303 1.303 13 H -0.277 1.277 14 C 0.139 3.861 15 C -0.113 4.113 16 H 0.083 0.917 17 C 0.131 3.869 18 N -0.702 5.702 19 C 0.601 3.399 20 O -0.533 6.533 21 C -0.065 4.065 22 C 0.056 3.944 23 O -0.167 6.167 24 C 0.095 3.905 25 C 0.587 3.413 26 F -0.151 7.151 27 F -0.156 7.156 28 F -0.140 7.140 29 N -0.388 5.388 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.027 0.973 34 H 0.059 0.941 35 H 0.263 0.737 36 H 0.035 0.965 37 H 0.030 0.970 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.412 0.588 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.758 -0.245 26.333 27.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.101 0.899 4 C -0.009 4.009 5 N -0.336 5.336 6 C -0.368 4.368 7 H 0.109 0.891 8 C -0.177 4.177 9 N -0.552 5.552 10 Si 0.713 3.287 11 H -0.212 1.212 12 H -0.231 1.231 13 H -0.203 1.203 14 C 0.014 3.986 15 C -0.132 4.132 16 H 0.101 0.899 17 C 0.009 3.991 18 N -0.352 5.352 19 C 0.385 3.615 20 O -0.410 6.410 21 C -0.188 4.188 22 C -0.018 4.018 23 O -0.051 6.051 24 C -0.116 4.116 25 C 0.531 3.469 26 F -0.132 7.132 27 F -0.137 7.137 28 F -0.121 7.121 29 N -0.119 5.119 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.248 0.752 41 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -6.762 0.081 25.700 26.575 hybrid contribution -0.693 -0.650 0.087 0.954 sum -7.455 -0.569 25.787 26.849 Atomic orbital electron populations 1.21731 0.94943 1.01726 1.01487 1.22306 0.94865 0.99521 0.94876 0.89870 1.22016 0.87299 0.95697 0.95884 1.44806 1.09918 1.78344 1.00502 1.18635 0.86675 1.41389 0.90151 0.89087 1.24996 0.96924 1.00198 0.95581 1.69850 1.33083 1.50690 1.01625 0.86972 0.85606 0.79165 0.76924 1.21163 1.23069 1.20282 1.21470 0.93313 0.98205 0.85654 1.22543 0.98989 0.98240 0.93433 0.89882 1.21551 1.00676 0.93596 0.83319 1.45888 1.67556 1.13193 1.08602 1.16537 0.77690 0.85864 0.81426 1.90861 1.52491 1.13462 1.84174 1.22077 1.10691 0.89340 0.96651 1.25771 0.94605 0.91950 0.89516 1.84417 1.65280 1.15411 1.39957 1.25468 1.09105 0.90624 0.86369 1.15964 0.75526 0.80158 0.75233 1.93341 1.30132 1.94724 1.94990 1.93308 1.92207 1.95654 1.32554 1.93345 1.77316 1.66767 1.74645 1.70680 1.10213 1.12072 1.18970 0.92702 0.92745 0.92462 0.95596 0.92264 0.92708 0.94707 0.95152 0.90464 0.90920 0.75225 0.73550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.29 37.16 0.35 -1.47 16 2 C -0.10 -1.51 3.09 -88.47 -0.27 -1.78 16 3 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 4 C 0.12 2.46 4.16 -2.53 -0.01 2.45 16 5 N -0.61 -14.56 3.21 -169.86 -0.55 -15.10 16 6 C -0.24 -6.86 10.58 -15.06 -0.16 -7.02 16 7 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 8 C 0.02 0.63 5.43 -17.43 -0.09 0.53 16 9 N -0.91 -28.16 13.97 55.49 0.78 -27.38 16 10 Si 0.88 22.59 24.27 -169.99 -4.13 18.46 16 11 H -0.28 -6.96 6.48 56.52 0.37 -6.60 16 12 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 13 H -0.28 -6.98 6.65 56.52 0.38 -6.60 16 14 C 0.14 2.63 6.77 -2.92 -0.02 2.61 16 15 C -0.11 -1.65 2.43 -88.79 -0.22 -1.87 16 16 H 0.08 1.14 8.01 -51.93 -0.42 0.73 16 17 C 0.13 1.67 5.02 -4.05 -0.02 1.65 16 18 N -0.70 -8.45 5.47 -61.39 -0.34 -8.78 16 19 C 0.60 7.33 7.81 -12.52 -0.10 7.24 16 20 O -0.53 -7.62 16.89 5.27 0.09 -7.53 16 21 C -0.07 -0.67 6.99 -83.02 -0.58 -1.25 16 22 C 0.06 0.40 11.95 29.96 0.36 0.76 16 23 O -0.17 -1.31 10.70 6.49 0.07 -1.24 16 24 C 0.09 0.86 7.53 -13.08 -0.10 0.76 16 25 C 0.59 4.71 3.57 36.01 0.13 4.84 16 26 F -0.15 -1.27 17.30 2.25 0.04 -1.23 16 27 F -0.16 -1.14 17.28 2.25 0.04 -1.10 16 28 F -0.14 -1.23 17.23 2.25 0.04 -1.19 16 29 N -0.39 -4.15 10.96 -7.66 -0.08 -4.23 16 30 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.03 0.58 5.47 -51.93 -0.28 0.29 16 34 H 0.06 1.36 6.63 -51.93 -0.34 1.01 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.03 0.67 7.68 -51.93 -0.40 0.27 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 1.07 7.93 -51.93 -0.41 0.66 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.41 4.71 8.20 -40.82 -0.33 4.38 16 41 H 0.25 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -33.28 359.23 -4.13 -37.41 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.76 Total: -0.97 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -0.74 Total: 7.46 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.19 Total: -55.50 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.16 Total: -8.77 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.12 Total: -3.52 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.13 Total: 18.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.28 -4.13 -37.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092780211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.394 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds