Wall clock time and date at job start Wed Apr 1 2020 06:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.88536 * 2 1 4 4 C 1.54905 * 111.00767 * 236.12204 * 2 1 3 5 5 N 1.47425 * 104.93059 * 204.86435 * 4 2 1 6 6 C 1.36939 * 125.64961 * 204.15718 * 5 4 2 7 7 H 1.07998 * 120.00321 * 161.51259 * 6 5 4 8 8 C 1.38813 * 119.99574 * 341.51537 * 6 5 4 9 9 N 1.31625 * 119.99502 * 157.60956 * 8 6 5 10 10 Si 1.86792 * 120.00162 * 337.61051 * 8 6 5 11 11 H 1.48498 * 109.47196 * 84.54220 * 10 8 6 12 12 H 1.48510 * 109.47106 * 204.53762 * 10 8 6 13 13 H 1.48492 * 109.47267 * 324.53766 * 10 8 6 14 14 C 1.47289 * 108.55940 * 24.14922 * 5 4 2 15 15 C 1.54326 * 107.30567 * 358.92931 * 14 5 4 16 16 H 1.09001 * 110.71993 * 96.17858 * 15 14 5 17 17 C 1.52996 * 110.71925 * 219.44929 * 15 14 5 18 18 N 1.46494 * 109.47421 * 288.52034 * 17 15 14 19 19 C 1.34780 * 119.99906 * 179.97438 * 18 17 15 20 20 O 1.21613 * 120.00301 * 0.02562 * 19 18 17 21 21 C 1.47421 * 119.99938 * 180.02562 * 19 18 17 22 22 C 1.36085 * 126.44940 * 179.71242 * 21 19 18 23 23 O 1.34264 * 106.94946 * 179.90034 * 22 21 19 24 24 C 1.34049 * 108.22370 * 0.37106 * 23 22 21 25 25 C 1.50703 * 125.37501 * 179.79991 * 24 23 22 26 26 F 1.39899 * 109.47249 * 269.96015 * 25 24 23 27 27 F 1.39904 * 109.46938 * 29.95817 * 25 24 23 28 28 F 1.39901 * 109.46792 * 149.95711 * 25 24 23 29 29 N 1.29929 * 109.24617 * 359.76459 * 24 23 22 30 30 H 1.09003 * 109.46789 * 182.42377 * 1 2 3 31 31 H 1.08990 * 109.47448 * 302.42482 * 1 2 3 32 32 H 1.08995 * 109.46907 * 62.43046 * 1 2 3 33 33 H 1.09001 * 110.36832 * 323.75117 * 4 2 1 34 34 H 1.08996 * 110.36854 * 85.96704 * 4 2 1 35 35 H 0.97002 * 119.99552 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.86033 * 239.50806 * 14 5 4 37 37 H 1.09005 * 109.87285 * 118.35841 * 14 5 4 38 38 H 1.09000 * 109.47179 * 48.52851 * 17 15 14 39 39 H 1.09005 * 109.47026 * 168.52472 * 17 15 14 40 40 H 0.96996 * 119.99931 * 0.02562 * 18 17 15 41 41 H 1.08002 * 126.52743 * 0.03847 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8061 -1.2006 5 7 3.4280 -1.2427 -0.7764 6 6 4.4638 -1.5645 -1.6124 7 1 5.4759 -1.5828 -1.2360 8 6 4.2128 -1.8669 -2.9438 9 7 5.1706 -1.7446 -3.8382 10 14 2.5159 -2.4474 -3.4658 11 1 1.6424 -1.2708 -3.7063 12 1 2.6276 -3.2443 -4.7140 13 1 1.9286 -3.2888 -2.3924 14 6 3.4675 -1.2743 0.6956 15 6 2.0862 -0.8083 1.2020 16 1 1.4468 -1.6637 1.4203 17 6 2.2350 0.0866 2.4339 18 7 2.6467 -0.7261 3.5811 19 6 2.8410 -0.1466 4.7824 20 8 2.6741 1.0507 4.9141 21 6 3.2559 -0.9644 5.9367 22 6 3.4931 -0.5180 7.2002 23 8 3.8432 -1.5868 7.9336 24 6 3.8297 -2.6647 7.1368 25 6 4.1664 -4.0700 7.5643 26 9 5.5361 -4.2950 7.3899 27 9 3.8340 -4.2395 8.9127 28 9 3.4416 -4.9800 6.7874 29 7 3.4796 -2.3066 5.9378 30 1 -0.3633 -1.0268 0.0435 31 1 -0.3634 0.5510 0.8673 32 1 -0.3633 0.4756 -0.9109 33 1 1.4520 -1.6698 -1.4031 34 1 2.1542 -0.1716 -2.0842 35 1 4.9954 -1.9563 -4.7685 36 1 4.2426 -0.6000 1.0598 37 1 3.6650 -2.2898 1.0393 38 1 2.9888 0.8496 2.2398 39 1 1.2806 0.5660 2.6522 40 1 2.7802 -1.6810 3.4760 41 1 3.4126 0.5014 7.5475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092780211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:56 Heat of formation + Delta-G solvation = -156.000833 kcal Electronic energy + Delta-G solvation = -30242.736213 eV Core-core repulsion = 25323.601800 eV Total energy + Delta-G solvation = -4919.134413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.52994 -49.04281 -49.03846 -44.98553 -40.91519 -39.76378 -36.51253 -36.17692 -34.77283 -32.98146 -32.76134 -31.24405 -28.26133 -27.87289 -27.22640 -25.49617 -24.04747 -23.38557 -22.40113 -21.75383 -21.20393 -20.22799 -20.01552 -19.70202 -18.98074 -18.60111 -18.13746 -17.69160 -17.28764 -16.94613 -16.70074 -16.18917 -15.84041 -15.80709 -15.40942 -15.40439 -15.32725 -15.13100 -15.11878 -15.06202 -14.86688 -14.56542 -14.18837 -14.14971 -14.11375 -13.54642 -13.29246 -12.96441 -12.85023 -12.67489 -12.53792 -12.45778 -12.27698 -11.77989 -11.71523 -11.67467 -11.36750 -11.24504 -10.81091 -10.76390 -10.18223 -9.06826 -8.20006 -5.46450 -0.38648 0.28125 0.28711 1.29086 1.37551 1.38495 1.46728 1.87604 1.98765 2.05081 2.39959 2.84650 2.89578 3.01478 3.16256 3.27445 3.40356 3.66780 3.75022 3.76723 3.86163 4.21936 4.27371 4.34701 4.35576 4.49452 4.60054 4.71136 4.75789 4.80075 4.91405 5.02211 5.07298 5.16498 5.30485 5.34200 5.49602 5.65928 5.72930 6.08178 6.33592 6.74586 6.92812 7.52091 8.09003 9.00146 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.002516 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.906174 B =11125.781311 C =12270.634129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 H 0.086 0.914 4 C 0.107 3.893 5 N -0.629 5.629 6 C -0.237 4.237 7 H 0.055 0.945 8 C -0.038 4.038 9 N -0.958 5.958 10 Si 0.949 3.051 11 H -0.267 1.267 12 H -0.308 1.308 13 H -0.268 1.268 14 C 0.134 3.866 15 C -0.093 4.093 16 H 0.101 0.899 17 C 0.142 3.858 18 N -0.704 5.704 19 C 0.604 3.396 20 O -0.556 6.556 21 C -0.097 4.097 22 C 0.090 3.910 23 O -0.162 6.162 24 C 0.090 3.910 25 C 0.594 3.406 26 F -0.153 7.153 27 F -0.150 7.150 28 F -0.145 7.145 29 N -0.407 5.407 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.026 0.974 34 H 0.037 0.963 35 H 0.263 0.737 36 H 0.028 0.972 37 H 0.030 0.970 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.414 0.586 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.329 0.273 28.705 30.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.104 0.896 4 C -0.018 4.018 5 N -0.356 5.356 6 C -0.365 4.365 7 H 0.073 0.927 8 C -0.233 4.233 9 N -0.604 5.604 10 Si 0.777 3.223 11 H -0.192 1.192 12 H -0.237 1.237 13 H -0.194 1.194 14 C 0.010 3.990 15 C -0.112 4.112 16 H 0.119 0.881 17 C 0.019 3.981 18 N -0.353 5.353 19 C 0.390 3.610 20 O -0.435 6.435 21 C -0.219 4.219 22 C 0.016 3.984 23 O -0.044 6.044 24 C -0.121 4.121 25 C 0.538 3.462 26 F -0.135 7.135 27 F -0.131 7.131 28 F -0.126 7.126 29 N -0.139 5.139 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.251 0.749 41 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -9.364 0.594 28.116 29.640 hybrid contribution 0.225 -0.770 -0.545 0.970 sum -9.139 -0.176 27.571 29.047 Atomic orbital electron populations 1.21722 0.91914 1.02650 1.03079 1.22259 0.97176 0.98733 0.92333 0.89571 1.22161 0.86010 0.95960 0.97629 1.44931 1.10033 1.78392 1.02245 1.18573 0.86854 1.40181 0.90923 0.92686 1.25659 1.00908 1.01016 0.95677 1.69981 1.35611 1.52893 1.01965 0.85912 0.81206 0.79001 0.76195 1.19232 1.23696 1.19354 1.21638 0.96193 0.98224 0.82977 1.22410 0.96086 0.98976 0.93765 0.88072 1.21377 1.01309 0.92793 0.82667 1.45857 1.67645 1.13260 1.08569 1.16676 0.76953 0.85690 0.81696 1.90844 1.53687 1.14392 1.84619 1.21907 1.13449 0.89334 0.97204 1.26490 0.90942 0.92748 0.88237 1.84461 1.65003 1.15299 1.39668 1.25524 1.09186 0.91153 0.86190 1.15825 0.75278 0.79740 0.75329 1.93336 1.30373 1.94711 1.95036 1.93320 1.92142 1.95588 1.32046 1.93333 1.77442 1.66948 1.74875 1.70602 1.10807 1.12613 1.19881 0.92243 0.89860 0.92137 0.95644 0.94502 0.92839 0.95395 0.95201 0.91685 0.88963 0.74932 0.69886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.29 71.98 0.67 -2.26 16 2 C -0.09 -2.47 3.09 -9.40 -0.03 -2.50 16 3 H 0.09 2.46 8.05 -2.39 -0.02 2.44 16 4 C 0.11 4.39 4.16 86.85 0.36 4.75 16 5 N -0.63 -30.23 3.21 -691.30 -2.22 -32.45 16 6 C -0.24 -13.91 10.58 84.03 0.89 -13.02 16 7 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 8 C -0.04 -2.29 5.43 84.86 0.46 -1.83 16 9 N -0.96 -61.52 13.97 21.65 0.30 -61.22 16 10 Si 0.95 47.30 24.27 68.60 1.66 48.96 16 11 H -0.27 -12.39 6.48 99.48 0.65 -11.74 16 12 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 13 H -0.27 -12.84 6.65 99.48 0.66 -12.18 16 14 C 0.13 5.03 6.77 86.68 0.59 5.61 16 15 C -0.09 -2.51 2.43 -9.61 -0.02 -2.53 16 16 H 0.10 2.43 8.01 -2.39 -0.02 2.41 16 17 C 0.14 3.25 5.02 86.38 0.43 3.69 16 18 N -0.70 -15.60 5.47 -466.38 -2.55 -18.15 16 19 C 0.60 13.63 7.81 86.66 0.68 14.30 16 20 O -0.56 -14.75 16.89 -4.07 -0.07 -14.82 16 21 C -0.10 -1.80 6.99 40.41 0.28 -1.52 16 22 C 0.09 1.04 11.95 67.32 0.80 1.84 16 23 O -0.16 -2.13 10.70 0.32 0.00 -2.12 16 24 C 0.09 1.50 7.53 88.39 0.67 2.16 16 25 C 0.59 8.84 3.57 71.24 0.25 9.09 16 26 F -0.15 -2.43 17.30 44.97 0.78 -1.66 16 27 F -0.15 -1.96 17.28 44.97 0.78 -1.19 16 28 F -0.14 -2.42 17.23 44.97 0.78 -1.64 16 29 N -0.41 -8.16 10.96 -293.04 -3.21 -11.37 16 30 H 0.06 1.25 8.11 -2.39 -0.02 1.23 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.03 1.07 5.47 -2.39 -0.01 1.06 16 34 H 0.04 1.66 6.63 -2.39 -0.02 1.65 16 35 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 36 H 0.03 1.08 7.68 -2.39 -0.02 1.06 16 37 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.06 1.69 7.93 -2.39 -0.02 1.67 16 39 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.41 8.84 8.20 -92.71 -0.76 8.08 16 41 H 0.29 0.80 8.06 -2.91 -0.02 0.78 16 Total: -1.00 -74.51 359.23 2.51 -72.00 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 0.23 Total: 5.87 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 6.03 Total: 17.79 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -7.68 Total: -123.19 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.07 Total: -16.94 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 2.33 Total: -4.49 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.66 Total: 48.96 kcal Total: -74.51 2.51 -72.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092780211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.003 kcal (2) G-P(sol) polarization free energy of solvation -74.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds