Wall clock time and date at job start Wed Apr 1 2020 06:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.29511 * 2 1 4 4 C 1.54003 * 110.32388 * 237.86439 * 2 1 3 5 5 N 1.47486 * 107.08454 * 242.41634 * 4 2 1 6 6 C 1.34781 * 127.03579 * 154.29172 * 5 4 2 7 7 O 1.21676 * 120.00221 * 180.02562 * 6 5 4 8 8 C 1.46721 * 119.99739 * 0.02562 * 6 5 4 9 9 O 1.35351 * 126.64367 * 359.68413 * 8 6 5 10 10 C 1.33671 * 107.68112 * 179.87703 * 9 8 6 11 11 N 1.30606 * 109.15454 * 0.39430 * 10 9 8 12 12 C 1.33695 * 108.99829 * 359.75732 * 11 10 9 13 13 C 1.50700 * 126.27409 * 180.02562 * 12 11 10 14 14 F 1.39899 * 109.47523 * 269.97584 * 13 12 11 15 15 F 1.39903 * 109.47174 * 29.97350 * 13 12 11 16 16 F 1.39897 * 109.47057 * 149.97204 * 13 12 11 17 17 C 1.48113 * 105.93573 * 334.55302 * 5 4 2 18 18 C 1.54620 * 110.32598 * 122.25147 * 2 1 3 19 19 H 1.09004 * 110.73930 * 22.39064 * 18 2 1 20 20 C 1.53007 * 110.73501 * 259.25658 * 18 2 1 21 21 N 1.46499 * 109.47106 * 174.99432 * 20 18 2 22 22 C 1.36933 * 119.99935 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00290 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99686 * 180.02562 * 22 21 20 25 25 N 1.31614 * 120.00305 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99646 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47396 * 90.00031 * 26 24 22 28 28 H 1.48496 * 109.47208 * 210.00053 * 26 24 22 29 29 H 1.48504 * 109.47097 * 330.00028 * 26 24 22 30 30 H 1.09005 * 109.47357 * 180.67821 * 1 2 3 31 31 H 1.08996 * 109.47211 * 300.68118 * 1 2 3 32 32 H 1.09005 * 109.47109 * 60.68039 * 1 2 3 33 33 H 1.08999 * 109.91434 * 123.05711 * 4 2 1 34 34 H 1.09002 * 110.07717 * 1.86290 * 4 2 1 35 35 H 1.08002 * 125.41469 * 180.15011 * 10 9 8 36 36 H 1.08997 * 110.66402 * 157.73301 * 17 5 4 37 37 H 1.08998 * 110.66769 * 280.85712 * 17 5 4 38 38 H 1.08994 * 109.46861 * 294.99843 * 20 18 2 39 39 H 1.09006 * 109.46771 * 54.99904 * 20 18 2 40 40 H 0.97002 * 119.99709 * 0.02562 * 21 20 18 41 41 H 0.96996 * 119.99900 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8276 -1.9218 -0.7103 6 6 3.0576 -3.0890 -1.3437 7 8 3.7079 -3.9601 -0.7971 8 6 2.5238 -3.3093 -2.6925 9 8 1.7828 -2.4410 -3.4198 10 6 1.5040 -3.0255 -4.5892 11 7 2.0344 -4.2189 -4.6090 12 6 2.6731 -4.4305 -3.4537 13 6 3.4215 -5.6793 -3.0644 14 9 2.5487 -6.5657 -2.4244 15 9 3.9444 -6.2863 -4.2113 16 9 4.4663 -5.3452 -2.1962 17 6 3.2836 -1.5378 0.6455 18 6 2.0671 -0.7737 1.2262 19 1 1.3173 -1.4700 1.6020 20 6 2.5054 0.1936 2.3277 21 7 2.8961 -0.5661 3.5178 22 6 3.3277 0.0914 4.6387 23 1 3.3797 1.1702 4.6456 24 6 3.6984 -0.6286 5.7662 25 7 3.6355 -1.9432 5.7577 26 14 4.2865 0.2685 7.2955 27 1 3.1254 0.5662 8.1721 28 1 5.2543 -0.5859 8.0292 29 1 4.9474 1.5386 6.9011 30 1 -0.3634 -1.0276 0.0122 31 1 -0.3633 0.5244 0.8838 32 1 -0.3633 0.5032 -0.8961 33 1 2.7181 -0.1228 -1.8102 34 1 1.2354 -1.1157 -1.8387 35 1 0.9281 -2.5830 -5.3885 36 1 3.5026 -2.4229 1.2427 37 1 4.1553 -0.8860 0.5880 38 1 3.3533 0.7824 1.9779 39 1 1.6789 0.8592 2.5767 40 1 2.8498 -1.5350 3.5115 41 1 3.8949 -2.4462 6.5454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106473406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:27:58 Heat of formation + Delta-G solvation = -158.929251 kcal Electronic energy + Delta-G solvation = -31281.293763 eV Core-core repulsion = 26362.032364 eV Total energy + Delta-G solvation = -4919.261399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.29805 -48.84806 -48.75909 -44.92693 -41.29527 -39.31398 -36.74471 -36.36155 -34.32143 -33.07497 -32.59575 -30.74355 -28.49977 -27.36684 -27.03636 -25.38458 -24.56193 -23.42420 -22.58809 -21.50214 -21.19649 -19.86095 -19.75064 -19.43845 -19.17525 -18.55662 -18.21846 -17.42474 -17.17218 -16.77673 -16.45881 -15.98283 -15.75556 -15.59511 -15.49429 -15.27810 -15.19601 -15.15368 -14.92851 -14.90869 -14.84205 -14.43090 -14.16771 -13.72322 -13.64127 -13.40237 -13.16681 -13.03823 -12.91877 -12.74872 -12.46460 -12.32173 -12.11963 -11.95310 -11.79280 -11.63222 -11.50039 -11.41951 -10.92525 -10.75315 -9.93446 -8.98592 -7.93469 -5.22607 -0.80838 0.78866 0.96974 1.29756 1.48168 1.49875 1.56945 1.58295 1.71209 2.30623 2.57025 2.61946 3.04728 3.12467 3.40211 3.46958 3.49663 3.52319 3.68249 3.78705 3.99484 4.16007 4.20899 4.36317 4.50128 4.51000 4.61611 4.75313 4.79483 4.83971 4.86124 4.95293 5.06969 5.19011 5.25644 5.34498 5.50137 5.53630 5.96790 6.16930 6.28059 6.58654 7.34426 8.11048 8.31853 9.30101 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.002757 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.448831 B =10153.728074 C =11579.264972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.110 0.890 4 C 0.099 3.901 5 N -0.601 5.601 6 C 0.599 3.401 7 O -0.532 6.532 8 C -0.026 4.026 9 O -0.161 6.161 10 C 0.255 3.745 11 N -0.493 5.493 12 C -0.039 4.039 13 C 0.544 3.456 14 F -0.174 7.174 15 F -0.166 7.166 16 F -0.153 7.153 17 C 0.119 3.881 18 C -0.094 4.094 19 H 0.068 0.932 20 C 0.165 3.835 21 N -0.749 5.749 22 C -0.242 4.242 23 H 0.081 0.919 24 C -0.078 4.078 25 N -0.972 5.972 26 Si 0.973 3.027 27 H -0.287 1.287 28 H -0.300 1.300 29 H -0.266 1.266 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.332 0.668 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.371 0.629 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.399 3.416 -27.643 29.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 H 0.128 0.872 4 C -0.022 4.022 5 N -0.332 5.332 6 C 0.385 3.615 7 O -0.411 6.411 8 C -0.085 4.085 9 O -0.046 6.046 10 C 0.031 3.969 11 N -0.219 5.219 12 C -0.164 4.164 13 C 0.489 3.511 14 F -0.155 7.155 15 F -0.147 7.147 16 F -0.134 7.134 17 C -0.003 4.003 18 C -0.114 4.114 19 H 0.087 0.913 20 C 0.039 3.961 21 N -0.391 5.391 22 C -0.373 4.373 23 H 0.098 0.902 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.802 3.198 27 H -0.214 1.214 28 H -0.227 1.227 29 H -0.191 1.191 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.346 0.654 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.203 0.797 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.040 2.654 -27.808 29.068 hybrid contribution 0.686 -0.346 1.857 2.010 sum -7.354 2.308 -25.951 27.071 Atomic orbital electron populations 1.21834 0.92652 1.01849 1.03282 1.22103 0.97539 1.00064 0.91070 0.87191 1.22711 0.96486 0.85979 0.97011 1.48738 1.52177 1.14322 1.17997 1.16210 0.80785 0.82088 0.82421 1.91045 1.41102 1.43595 1.65358 1.22458 1.00967 0.90419 0.94666 1.84720 1.52385 1.41045 1.26486 1.30004 0.94496 0.85850 0.86591 1.70217 1.12910 1.19179 1.19589 1.21513 1.05100 0.95413 0.94342 1.16976 0.77538 0.81608 0.74965 1.93224 1.69529 1.70353 1.82390 1.93220 1.87138 1.84541 1.49826 1.93387 1.58455 1.91984 1.69575 1.22532 0.97823 0.99130 0.80842 1.22430 0.96120 0.97363 0.95446 0.91331 1.20802 0.96996 0.93061 0.85273 1.42642 1.79366 1.05717 1.11396 1.19651 1.34357 0.91842 0.91486 0.90153 1.25591 1.03673 0.96197 1.01589 1.69829 1.56303 1.06127 1.29990 0.85149 0.77423 0.77631 0.79618 1.21420 1.22663 1.19092 0.93503 0.92503 0.89450 0.88397 0.88058 0.65368 0.92532 0.89635 0.95041 0.94893 0.79725 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.90 71.98 0.64 -1.44 16 2 C -0.09 -1.57 3.17 -9.90 -0.03 -1.60 16 3 H 0.11 1.63 7.86 -2.39 -0.02 1.61 16 4 C 0.10 1.59 5.98 86.53 0.52 2.11 16 5 N -0.60 -15.41 3.29 -814.06 -2.68 -18.09 16 6 C 0.60 17.57 7.81 86.46 0.68 18.24 16 7 O -0.53 -20.16 13.34 -4.27 -0.06 -20.22 16 8 C -0.03 -0.58 6.95 24.04 0.17 -0.41 16 9 O -0.16 -1.98 8.16 -7.23 -0.06 -2.04 16 10 C 0.26 1.78 13.21 130.42 1.72 3.50 16 11 N -0.49 -8.73 11.21 -303.13 -3.40 -12.13 16 12 C -0.04 -0.95 6.49 41.83 0.27 -0.67 16 13 C 0.54 15.39 3.34 71.24 0.24 15.63 16 14 F -0.17 -5.14 17.30 44.97 0.78 -4.37 16 15 F -0.17 -4.41 17.27 44.97 0.78 -3.63 16 16 F -0.15 -5.04 13.47 44.97 0.61 -4.43 16 17 C 0.12 3.67 6.46 86.73 0.56 4.23 16 18 C -0.09 -2.68 2.61 -9.58 -0.03 -2.70 16 19 H 0.07 2.22 7.86 -2.38 -0.02 2.20 16 20 C 0.17 5.91 5.59 86.38 0.48 6.39 16 21 N -0.75 -37.01 5.52 -343.44 -1.90 -38.91 16 22 C -0.24 -13.24 9.99 84.04 0.84 -12.40 16 23 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 24 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 25 N -0.97 -60.49 13.06 21.65 0.28 -60.21 16 26 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 27 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 28 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 29 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 30 H 0.05 0.79 8.13 -2.38 -0.02 0.77 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 1.23 5.76 -2.39 -0.01 1.22 16 35 H 0.33 -2.65 8.06 -2.91 -0.02 -2.67 16 36 H 0.06 2.19 7.85 -2.39 -0.02 2.17 16 37 H 0.09 2.58 7.95 -2.39 -0.02 2.56 16 38 H 0.03 1.09 8.00 -2.39 -0.02 1.07 16 39 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.37 20.10 7.67 -92.71 -0.71 19.39 16 41 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -79.04 357.34 3.29 -75.74 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.39 Total: 13.30 kcal Atomic # 6 Polarization: 20.29 SS G_CDS: 6.53 Total: 26.81 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -7.69 Total: -129.35 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.12 Total: -22.25 kcal Atomic # 9 Polarization: -14.59 SS G_CDS: 2.16 Total: -12.43 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -79.04 3.29 -75.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106473406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.185 kcal (2) G-P(sol) polarization free energy of solvation -79.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds