Wall clock time and date at job start Wed Apr 1 2020 07:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 109.46859 * 2 1 4 4 C 1.50698 * 109.46903 * 239.99849 * 2 1 3 5 5 O 1.21282 * 120.00317 * 264.99719 * 4 2 1 6 6 N 1.34777 * 120.00027 * 85.00250 * 4 2 1 7 7 C 1.47082 * 120.87899 * 359.72011 * 6 4 2 8 8 C 1.53697 * 108.27794 * 128.75958 * 7 6 4 9 9 N 1.46892 * 109.26091 * 54.07436 * 8 7 6 10 10 C 1.46904 * 110.99984 * 172.60687 * 9 8 7 11 11 C 1.50697 * 109.47473 * 294.30504 * 10 9 8 12 12 O 1.21293 * 119.99513 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99727 * 179.97438 * 11 10 9 14 14 C 1.37106 * 119.99382 * 180.02562 * 13 11 10 15 15 H 1.07994 * 120.00291 * 0.02562 * 14 13 11 16 16 C 1.38951 * 119.99346 * 180.02562 * 14 13 11 17 17 N 1.31412 * 120.00503 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99667 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47384 * 59.99673 * 18 16 14 20 20 H 1.48501 * 109.47184 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47058 * 299.99826 * 18 16 14 22 22 C 1.46900 * 111.27387 * 296.76434 * 9 8 7 23 23 C 1.47076 * 120.88312 * 179.97438 * 6 4 2 24 24 S 1.81397 * 109.46871 * 119.99811 * 2 1 3 25 25 C 1.81399 * 101.92362 * 305.00006 * 24 2 1 26 26 O 1.42107 * 108.57640 * 190.51299 * 24 2 1 27 27 O 1.42101 * 108.58050 * 59.48953 * 24 2 1 28 28 H 1.08995 * 109.46859 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47081 * 299.99750 * 1 2 3 30 30 H 1.09002 * 109.46845 * 60.00164 * 1 2 3 31 31 H 1.09003 * 109.62387 * 248.52114 * 7 6 4 32 32 H 1.09000 * 109.62832 * 9.10015 * 7 6 4 33 33 H 1.09002 * 109.64345 * 294.07246 * 8 7 6 34 34 H 1.08997 * 109.41980 * 173.95093 * 8 7 6 35 35 H 1.08997 * 109.46449 * 54.31248 * 10 9 8 36 36 H 1.09001 * 109.46510 * 174.30437 * 10 9 8 37 37 H 0.96993 * 120.00483 * 0.02562 * 13 11 10 38 38 H 0.96995 * 120.00179 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.48720 * 303.14555 * 22 9 8 40 40 H 1.08993 * 109.49328 * 183.06357 * 22 9 8 41 41 H 1.09001 * 109.63123 * 350.90167 * 23 6 4 42 42 H 1.09006 * 109.62575 * 111.47530 * 23 6 4 43 43 H 1.09001 * 109.46593 * 60.00209 * 25 24 2 44 44 H 1.09001 * 109.47186 * 179.97438 * 25 24 2 45 45 H 1.09000 * 109.47070 * 300.00212 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.3209 -1.8872 -1.1760 6 7 2.1611 -0.0381 -2.3914 7 6 1.8112 1.3877 -2.4809 8 6 2.9953 2.1358 -3.1138 9 7 3.3423 1.5006 -4.3921 10 6 4.3518 2.2868 -5.1137 11 6 3.7627 3.6151 -5.5133 12 8 2.6150 3.8809 -5.2248 13 7 4.5116 4.5080 -6.1902 14 6 3.9758 5.7167 -6.5532 15 1 2.9539 5.9534 -6.2964 16 6 4.7477 6.6371 -7.2516 17 7 5.9910 6.3489 -7.5647 18 14 4.0180 8.2842 -7.7457 19 1 3.5928 9.0221 -6.5292 20 1 5.0382 9.0786 -8.4759 21 1 2.8425 8.0610 -8.6252 22 6 3.7950 0.1172 -4.1942 23 6 2.6499 -0.7120 -3.6039 24 16 2.1347 -0.8551 1.4811 25 6 1.2998 0.0577 2.8079 26 8 3.5343 -0.6349 1.5914 27 8 1.6409 -2.1875 1.4681 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.9237 1.5086 -3.1020 32 1 1.6193 1.7809 -1.4825 33 1 3.8539 2.0969 -2.4435 34 1 2.7161 3.1749 -3.2879 35 1 5.2141 2.4512 -4.4677 36 1 4.6645 1.7448 -6.0062 37 1 5.4295 4.2956 -6.4206 38 1 6.5299 6.9915 -8.0519 39 1 4.6424 0.1064 -3.5087 40 1 4.0958 -0.3076 -5.1518 41 1 3.0128 -1.7076 -3.3484 42 1 1.8415 -0.7894 -4.3310 43 1 0.2202 -0.0209 2.6794 44 1 1.5821 -0.3640 3.7725 45 1 1.5949 1.1063 2.7690 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113020627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:08:35 Heat of formation + Delta-G solvation = -112.475711 kcal Electronic energy + Delta-G solvation = -29232.190941 eV Core-core repulsion = 24992.244611 eV Total energy + Delta-G solvation = -4239.946331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -40.59619 -38.82216 -37.43740 -37.25688 -36.26516 -34.86321 -34.08435 -33.64955 -31.33991 -31.11249 -29.88390 -28.89666 -26.13975 -25.17425 -23.91208 -23.72395 -21.50480 -19.64684 -19.30101 -18.86805 -18.09149 -17.84309 -17.20452 -16.49987 -16.30593 -16.05873 -15.66178 -15.43377 -15.16493 -14.89463 -14.60425 -14.43223 -14.11954 -13.90053 -13.71869 -13.69567 -13.68860 -13.57230 -13.10841 -12.72007 -12.55733 -12.40955 -12.29004 -12.23493 -12.04444 -11.71786 -11.59091 -11.42285 -11.35357 -11.28634 -11.19298 -10.90566 -10.85172 -10.49401 -10.27708 -10.18111 -9.53463 -9.04736 -8.48170 -8.06309 -7.97349 -6.47770 -3.89102 -0.47948 2.15811 2.32846 2.54923 3.14822 3.21664 3.25097 3.35888 3.58552 3.79494 3.84746 3.90505 4.09613 4.16907 4.32749 4.37428 4.59125 4.74372 4.83572 4.87642 4.97872 5.02946 5.12917 5.16997 5.19760 5.25416 5.31678 5.37614 5.50892 5.62647 5.72754 5.75662 5.81935 6.01944 6.03076 6.18306 6.28882 6.95770 7.15854 7.21228 7.48785 7.70529 7.99068 8.54224 9.11054 9.47217 9.98009 10.69692 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021741 B = 0.002207 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.590676 B =12681.690932 C =13162.175558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.620 4.620 3 H 0.157 0.843 4 C 0.543 3.457 5 O -0.530 6.530 6 N -0.597 5.597 7 C 0.109 3.891 8 C 0.035 3.965 9 N -0.514 5.514 10 C 0.046 3.954 11 C 0.443 3.557 12 O -0.581 6.581 13 N -0.562 5.562 14 C -0.301 4.301 15 H 0.103 0.897 16 C 0.023 3.977 17 N -0.900 5.900 18 Si 0.931 3.069 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.038 3.962 23 C 0.117 3.883 24 S 2.446 3.554 25 C -0.661 4.661 26 O -0.930 6.930 27 O -0.910 6.910 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.030 0.970 34 H 0.119 0.881 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.392 0.608 38 H 0.273 0.727 39 H 0.038 0.962 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.218 -11.089 16.495 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.728 4.728 3 H 0.175 0.825 4 C 0.328 3.672 5 O -0.407 6.407 6 N -0.330 5.330 7 C -0.013 4.013 8 C -0.093 4.093 9 N -0.239 5.239 10 C -0.085 4.085 11 C 0.228 3.772 12 O -0.465 6.465 13 N -0.198 5.198 14 C -0.430 4.430 15 H 0.121 0.879 16 C -0.179 4.179 17 N -0.541 5.541 18 Si 0.758 3.242 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.090 4.090 23 C -0.005 4.005 24 S 2.623 3.377 25 C -0.810 4.810 26 O -0.927 6.927 27 O -0.907 6.907 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.048 0.952 34 H 0.136 0.864 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.226 0.774 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.151 0.849 44 H 0.152 0.848 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.528 -12.119 16.339 22.058 hybrid contribution 0.569 1.753 -0.142 1.848 sum -7.959 -10.366 16.197 20.812 Atomic orbital electron populations 1.21650 0.87383 1.05214 1.05343 1.30730 1.09207 1.15748 1.17131 0.82507 1.19113 0.78075 0.86487 0.83539 1.90864 1.50621 1.14770 1.84463 1.48120 1.63924 1.11616 1.09341 1.22163 0.99258 0.78508 1.01377 1.22768 0.96018 1.01422 0.89106 1.61501 1.41502 1.00754 1.20161 1.21861 0.92809 0.95019 0.98831 1.19684 0.87387 0.85679 0.84440 1.90464 1.18072 1.78847 1.59145 1.41873 1.14091 1.14786 1.49030 1.19638 0.99222 0.91256 1.32925 0.87922 1.25275 0.95408 1.00084 0.97104 1.69599 1.07500 1.37023 1.40022 0.85915 0.78406 0.81068 0.78811 1.19911 1.20961 1.19864 1.22529 0.95853 0.89739 1.00920 1.21815 0.97147 0.96482 0.85056 1.07543 0.76161 0.76655 0.77388 1.30395 1.15270 1.15918 1.19462 1.93608 1.27602 1.86384 1.85135 1.93602 1.81562 1.30582 1.84939 0.89676 0.89925 0.89484 0.89386 0.89581 0.95156 0.86354 0.93319 0.89077 0.77443 0.91733 0.94399 0.89143 0.88432 0.90060 0.84890 0.84827 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 8.85 37.16 0.33 -0.42 16 2 C -0.62 -5.03 2.33 -27.88 -0.06 -5.09 16 3 H 0.16 0.81 6.23 -51.93 -0.32 0.48 16 4 C 0.54 6.82 6.83 -10.99 -0.08 6.75 16 5 O -0.53 -8.54 14.93 -9.37 -0.14 -8.68 16 6 N -0.60 -7.20 3.00 -172.20 -0.52 -7.72 16 7 C 0.11 1.22 6.21 -3.36 -0.02 1.20 16 8 C 0.04 0.50 5.27 -3.47 -0.02 0.49 16 9 N -0.51 -7.84 4.37 -235.50 -1.03 -8.87 16 10 C 0.05 0.77 5.45 -4.98 -0.03 0.74 16 11 C 0.44 9.76 7.44 -10.99 -0.08 9.68 16 12 O -0.58 -14.39 13.91 5.55 0.08 -14.31 16 13 N -0.56 -13.59 5.29 -10.96 -0.06 -13.64 16 14 C -0.30 -8.05 9.68 -14.93 -0.14 -8.19 16 15 H 0.10 2.86 7.16 -52.49 -0.38 2.49 16 16 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 17 N -0.90 -23.87 13.05 55.50 0.72 -23.15 16 18 Si 0.93 20.40 29.55 -169.99 -5.02 15.37 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 C 0.04 0.48 5.62 -3.72 -0.02 0.46 16 23 C 0.12 1.40 6.59 -3.62 -0.02 1.38 16 24 S 2.45 22.61 4.52 -107.50 -0.49 22.13 16 25 C -0.66 -2.46 10.01 101.05 1.01 -1.45 16 26 O -0.93 -12.29 18.10 -57.83 -1.05 -13.34 16 27 O -0.91 -11.92 17.21 -64.28 -1.11 -13.03 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.15 6.39 -51.93 -0.33 -0.19 16 30 H 0.09 0.46 7.84 -51.93 -0.41 0.05 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 0.68 5.46 -51.93 -0.28 0.40 16 33 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.12 2.02 5.76 -51.93 -0.30 1.72 16 35 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 36 H 0.09 1.37 7.97 -51.93 -0.41 0.96 16 37 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.99 7.99 -51.93 -0.41 0.57 16 41 H 0.10 1.17 7.06 -51.93 -0.37 0.81 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.13 0.20 6.77 -51.92 -0.35 -0.15 16 44 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 45 H 0.13 0.23 8.14 -51.92 -0.42 -0.20 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -37.87 375.00 -8.59 -46.47 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.41 Total: 7.08 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 0.77 Total: 6.04 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.88 Total: -53.38 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -2.22 Total: -49.36 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 22.61 SS G_CDS: -0.49 Total: 22.13 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.87 -8.59 -46.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113020627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.010 kcal (2) G-P(sol) polarization free energy of solvation -37.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds