Wall clock time and date at job start Wed Apr 1 2020 07:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 109.46859 * 2 1 4 4 C 1.50698 * 109.46903 * 239.99849 * 2 1 3 5 5 O 1.21282 * 120.00317 * 264.99719 * 4 2 1 6 6 N 1.34777 * 120.00027 * 85.00250 * 4 2 1 7 7 C 1.47082 * 120.87899 * 359.72011 * 6 4 2 8 8 C 1.53697 * 108.27794 * 128.75958 * 7 6 4 9 9 N 1.46892 * 109.26091 * 54.07436 * 8 7 6 10 10 C 1.46904 * 110.99984 * 172.60687 * 9 8 7 11 11 C 1.50697 * 109.47473 * 294.30504 * 10 9 8 12 12 O 1.21293 * 119.99513 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99727 * 179.97438 * 11 10 9 14 14 C 1.37106 * 119.99382 * 180.02562 * 13 11 10 15 15 H 1.07994 * 120.00291 * 0.02562 * 14 13 11 16 16 C 1.38951 * 119.99346 * 180.02562 * 14 13 11 17 17 N 1.31412 * 120.00503 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99667 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47384 * 59.99673 * 18 16 14 20 20 H 1.48501 * 109.47184 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47058 * 299.99826 * 18 16 14 22 22 C 1.46900 * 111.27387 * 296.76434 * 9 8 7 23 23 C 1.47076 * 120.88312 * 179.97438 * 6 4 2 24 24 S 1.81397 * 109.46871 * 119.99811 * 2 1 3 25 25 C 1.81399 * 101.92362 * 305.00006 * 24 2 1 26 26 O 1.42107 * 108.57640 * 190.51299 * 24 2 1 27 27 O 1.42101 * 108.58050 * 59.48953 * 24 2 1 28 28 H 1.08995 * 109.46859 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47081 * 299.99750 * 1 2 3 30 30 H 1.09002 * 109.46845 * 60.00164 * 1 2 3 31 31 H 1.09003 * 109.62387 * 248.52114 * 7 6 4 32 32 H 1.09000 * 109.62832 * 9.10015 * 7 6 4 33 33 H 1.09002 * 109.64345 * 294.07246 * 8 7 6 34 34 H 1.08997 * 109.41980 * 173.95093 * 8 7 6 35 35 H 1.08997 * 109.46449 * 54.31248 * 10 9 8 36 36 H 1.09001 * 109.46510 * 174.30437 * 10 9 8 37 37 H 0.96993 * 120.00483 * 0.02562 * 13 11 10 38 38 H 0.96995 * 120.00179 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.48720 * 303.14555 * 22 9 8 40 40 H 1.08993 * 109.49328 * 183.06357 * 22 9 8 41 41 H 1.09001 * 109.63123 * 350.90167 * 23 6 4 42 42 H 1.09006 * 109.62575 * 111.47530 * 23 6 4 43 43 H 1.09001 * 109.46593 * 60.00209 * 25 24 2 44 44 H 1.09001 * 109.47186 * 179.97438 * 25 24 2 45 45 H 1.09000 * 109.47070 * 300.00212 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.3209 -1.8872 -1.1760 6 7 2.1611 -0.0381 -2.3914 7 6 1.8112 1.3877 -2.4809 8 6 2.9953 2.1358 -3.1138 9 7 3.3423 1.5006 -4.3921 10 6 4.3518 2.2868 -5.1137 11 6 3.7627 3.6151 -5.5133 12 8 2.6150 3.8809 -5.2248 13 7 4.5116 4.5080 -6.1902 14 6 3.9758 5.7167 -6.5532 15 1 2.9539 5.9534 -6.2964 16 6 4.7477 6.6371 -7.2516 17 7 5.9910 6.3489 -7.5647 18 14 4.0180 8.2842 -7.7457 19 1 3.5928 9.0221 -6.5292 20 1 5.0382 9.0786 -8.4759 21 1 2.8425 8.0610 -8.6252 22 6 3.7950 0.1172 -4.1942 23 6 2.6499 -0.7120 -3.6039 24 16 2.1347 -0.8551 1.4811 25 6 1.2998 0.0577 2.8079 26 8 3.5343 -0.6349 1.5914 27 8 1.6409 -2.1875 1.4681 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.9237 1.5086 -3.1020 32 1 1.6193 1.7809 -1.4825 33 1 3.8539 2.0969 -2.4435 34 1 2.7161 3.1749 -3.2879 35 1 5.2141 2.4512 -4.4677 36 1 4.6645 1.7448 -6.0062 37 1 5.4295 4.2956 -6.4206 38 1 6.5299 6.9915 -8.0519 39 1 4.6424 0.1064 -3.5087 40 1 4.0958 -0.3076 -5.1518 41 1 3.0128 -1.7076 -3.3484 42 1 1.8415 -0.7894 -4.3310 43 1 0.2202 -0.0209 2.6794 44 1 1.5821 -0.3640 3.7725 45 1 1.5949 1.1063 2.7690 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113020627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:08:34 Heat of formation + Delta-G solvation = -144.933616 kcal Electronic energy + Delta-G solvation = -29233.598422 eV Core-core repulsion = 24992.244611 eV Total energy + Delta-G solvation = -4241.353811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.58987 -40.33662 -38.77244 -38.07363 -37.05411 -36.13071 -35.63635 -34.54233 -33.25400 -32.09605 -30.40079 -30.03762 -27.49677 -26.16939 -25.25783 -24.75092 -22.51374 -21.07356 -20.51725 -19.86817 -19.61605 -18.84021 -18.04664 -17.75285 -17.20088 -17.05586 -16.62241 -16.53885 -16.38766 -16.28744 -16.08154 -15.48525 -15.38053 -15.30763 -15.02144 -14.47356 -14.23229 -14.10907 -13.96909 -13.79925 -13.50331 -13.26834 -13.24908 -13.16491 -13.08103 -12.97449 -12.92292 -12.79658 -12.42746 -12.41568 -12.33665 -12.19727 -12.10903 -11.99093 -11.47087 -11.42090 -11.10699 -10.36198 -9.99985 -9.89094 -9.27023 -8.44401 -5.92851 -1.09600 1.24955 1.41254 1.43621 1.54010 1.66446 1.74146 2.07077 2.28954 2.63059 2.73296 2.99289 3.17404 3.22857 3.36094 3.62543 3.72751 3.88397 3.92319 4.10305 4.11100 4.18916 4.22644 4.25567 4.41790 4.43246 4.48278 4.56088 4.59537 4.64028 4.67477 4.77621 4.89307 4.96276 4.99791 5.16586 5.25478 5.43059 5.77084 6.02616 6.08231 6.16068 6.62080 6.76545 7.14774 7.58842 8.13178 8.72776 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021741 B = 0.002207 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.590676 B =12681.690932 C =13162.175558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.612 4.612 3 H 0.190 0.810 4 C 0.531 3.469 5 O -0.575 6.575 6 N -0.598 5.598 7 C 0.115 3.885 8 C 0.034 3.966 9 N -0.528 5.528 10 C 0.057 3.943 11 C 0.445 3.555 12 O -0.608 6.608 13 N -0.575 5.575 14 C -0.329 4.329 15 H 0.083 0.917 16 C -0.015 4.015 17 N -0.923 5.923 18 Si 0.992 3.008 19 H -0.270 1.270 20 H -0.274 1.274 21 H -0.272 1.272 22 C 0.044 3.956 23 C 0.115 3.885 24 S 2.423 3.577 25 C -0.626 4.626 26 O -0.987 6.987 27 O -0.966 6.966 28 H 0.070 0.930 29 H 0.130 0.870 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.035 0.965 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.395 0.605 38 H 0.276 0.724 39 H 0.037 0.963 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.166 0.834 44 H 0.147 0.853 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.628 -9.740 17.989 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.721 4.721 3 H 0.207 0.793 4 C 0.319 3.681 5 O -0.455 6.455 6 N -0.330 5.330 7 C -0.007 4.007 8 C -0.095 4.095 9 N -0.254 5.254 10 C -0.074 4.074 11 C 0.232 3.768 12 O -0.494 6.494 13 N -0.213 5.213 14 C -0.459 4.459 15 H 0.101 0.899 16 C -0.214 4.214 17 N -0.564 5.564 18 Si 0.816 3.184 19 H -0.195 1.195 20 H -0.199 1.199 21 H -0.197 1.197 22 C -0.084 4.084 23 C -0.008 4.008 24 S 2.607 3.393 25 C -0.780 4.780 26 O -0.984 6.984 27 O -0.963 6.963 28 H 0.089 0.911 29 H 0.148 0.852 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.141 0.859 33 H 0.053 0.947 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.228 0.772 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.126 0.874 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.184 0.816 44 H 0.165 0.835 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.907 -10.810 17.808 23.068 hybrid contribution 0.930 1.318 -0.547 1.704 sum -8.976 -9.492 17.261 21.648 Atomic orbital electron populations 1.21857 0.84955 1.05246 1.07991 1.30708 1.11070 1.16405 1.13886 0.79268 1.19892 0.77253 0.86264 0.84732 1.90844 1.52443 1.16949 1.85280 1.48211 1.63571 1.11880 1.09335 1.22207 0.97581 0.77662 1.03224 1.22719 0.97403 1.00298 0.89031 1.61497 1.41310 1.01746 1.20799 1.21734 0.93135 0.92345 1.00225 1.20604 0.86842 0.86827 0.82513 1.90444 1.19496 1.79819 1.59686 1.41952 1.14410 1.14796 1.50097 1.19629 0.98838 0.92968 1.34431 0.89910 1.26037 0.95727 1.03013 0.96652 1.69669 1.08275 1.38095 1.40356 0.85000 0.77806 0.77120 0.78507 1.19484 1.19921 1.19726 1.22548 0.95854 0.88104 1.01890 1.21807 0.97230 0.96301 0.85427 1.07749 0.75677 0.76807 0.79044 1.30127 1.16131 1.16181 1.15556 1.93537 1.31549 1.87120 1.86187 1.93535 1.81922 1.34784 1.86079 0.91068 0.85166 0.88965 0.89574 0.85855 0.94722 0.89195 0.91822 0.87088 0.77171 0.91417 0.94521 0.87446 0.88855 0.89594 0.81552 0.83501 0.81736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.85 71.99 0.64 -0.43 16 2 C -0.61 -8.56 2.33 29.85 0.07 -8.49 16 3 H 0.19 1.23 6.23 -2.39 -0.01 1.21 16 4 C 0.53 13.12 6.83 87.66 0.60 13.72 16 5 O -0.57 -19.26 14.93 11.24 0.17 -19.09 16 6 N -0.60 -13.84 3.00 -817.11 -2.45 -16.30 16 7 C 0.12 2.36 6.21 86.50 0.54 2.90 16 8 C 0.03 0.94 5.27 86.54 0.46 1.39 16 9 N -0.53 -15.58 4.37 -898.98 -3.93 -19.51 16 10 C 0.06 1.83 5.45 85.56 0.47 2.30 16 11 C 0.44 19.71 7.44 87.66 0.65 20.36 16 12 O -0.61 -30.53 13.91 -3.07 -0.04 -30.57 16 13 N -0.58 -28.19 5.29 -306.99 -1.62 -29.81 16 14 C -0.33 -17.89 9.68 84.04 0.81 -17.08 16 15 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 16 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 17 N -0.92 -48.88 13.05 21.66 0.28 -48.59 16 18 Si 0.99 41.57 29.55 68.60 2.03 43.60 16 19 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 C 0.04 1.05 5.62 86.37 0.49 1.54 16 23 C 0.11 2.70 6.59 86.34 0.57 3.27 16 24 S 2.42 42.49 4.52 -56.49 -0.26 42.23 16 25 C -0.63 -1.68 10.01 113.37 1.14 -0.55 16 26 O -0.99 -26.55 18.10 -127.37 -2.31 -28.85 16 27 O -0.97 -26.13 17.21 -121.20 -2.09 -28.22 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.13 -0.30 6.39 -2.39 -0.02 -0.31 16 30 H 0.09 0.65 7.84 -2.39 -0.02 0.63 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.12 1.53 5.46 -2.39 -0.01 1.52 16 33 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 3.05 5.76 -2.39 -0.01 3.03 16 35 H 0.06 1.90 8.12 -2.39 -0.02 1.88 16 36 H 0.11 3.17 7.97 -2.39 -0.02 3.15 16 37 H 0.39 18.61 7.90 -92.71 -0.73 17.88 16 38 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 39 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.11 2.17 7.99 -2.39 -0.02 2.15 16 41 H 0.09 2.30 7.06 -2.39 -0.02 2.28 16 42 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.17 -0.55 6.77 -2.39 -0.02 -0.56 16 44 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 45 H 0.16 -0.48 8.14 -2.39 -0.02 -0.50 16 Total: -1.00 -88.04 375.00 -3.03 -91.08 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.29 Total: 25.41 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 6.89 Total: 18.64 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -7.72 Total: -114.21 kcal Atomic # 8 Polarization: -102.47 SS G_CDS: -4.27 Total: -106.74 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 42.49 SS G_CDS: -0.26 Total: 42.23 kcal Total: -88.04 -3.03 -91.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113020627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.859 kcal (2) G-P(sol) polarization free energy of solvation -88.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds