Wall clock time and date at job start Wed Apr 1 2020 06:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46738 * 2 1 4 4 C 1.53001 * 109.46829 * 240.00258 * 2 1 3 5 5 C 1.53003 * 109.46644 * 174.99949 * 4 2 1 6 6 C 1.53001 * 109.46644 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.46918 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47145 * 179.97438 * 7 6 5 9 9 C 1.36934 * 119.99714 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00661 * 359.97438 * 9 8 7 11 11 C 1.38821 * 119.99900 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99651 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00110 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47344 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46889 * 120.00162 * 13 11 9 16 16 H 1.48496 * 109.47497 * 240.00133 * 13 11 9 17 17 N 1.46494 * 109.47126 * 120.00037 * 2 1 3 18 18 C 1.34776 * 120.00353 * 275.00244 * 17 2 1 19 19 O 1.21691 * 119.99793 * 359.97438 * 18 17 2 20 20 C 1.46680 * 120.00439 * 179.97438 * 18 17 2 21 21 S 1.76212 * 126.12947 * 359.97438 * 20 18 17 22 22 C 1.70945 * 90.31647 * 179.97438 * 21 20 18 23 23 N 1.29434 * 110.39171 * 359.97438 * 22 21 20 24 24 C 1.30942 * 117.36033 * 0.02562 * 23 22 21 25 25 C 1.50701 * 122.90168 * 179.97438 * 24 23 22 26 26 F 1.39906 * 109.47296 * 120.02534 * 25 24 23 27 27 F 1.39905 * 109.46796 * 240.02313 * 25 24 23 28 28 H 1.09004 * 109.47469 * 59.99894 * 1 2 3 29 29 H 1.09000 * 109.47343 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47464 * 299.99876 * 1 2 3 31 31 H 1.08998 * 109.46984 * 295.00141 * 4 2 1 32 32 H 1.09002 * 109.47271 * 55.00131 * 4 2 1 33 33 H 1.08993 * 109.47140 * 299.99928 * 5 4 2 34 34 H 1.09002 * 109.47138 * 60.00101 * 5 4 2 35 35 H 1.09003 * 109.47196 * 299.99301 * 6 5 4 36 36 H 1.08990 * 109.47589 * 59.99953 * 6 5 4 37 37 H 1.09006 * 109.47006 * 299.99939 * 7 6 5 38 38 H 1.09000 * 109.47197 * 59.99343 * 7 6 5 39 39 H 0.96999 * 119.99972 * 0.02562 * 8 7 6 40 40 H 0.96998 * 120.00114 * 179.97438 * 12 11 9 41 41 H 0.96998 * 119.99765 * 94.99707 * 17 2 1 42 42 H 1.07996 * 124.80751 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.47426 * 0.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0748 -1.3350 -2.5627 7 6 5.5997 -1.2275 -2.6268 8 7 6.0881 -1.9191 -3.8224 9 6 7.4302 -1.9556 -4.0919 10 1 8.1286 -1.4743 -3.4234 11 6 7.8931 -2.6114 -5.2245 12 7 7.0419 -3.1976 -6.0395 13 14 9.7237 -2.6606 -5.5926 14 1 10.4621 -1.9318 -4.5301 15 1 10.1824 -4.0724 -5.6341 16 1 9.9821 -2.0174 -6.9058 17 7 2.0183 -0.6906 1.1961 18 6 2.1470 -0.0183 2.3571 19 8 1.8580 1.1625 2.4117 20 6 2.6354 -0.7099 3.5549 21 16 3.0975 -2.4072 3.6588 22 6 3.4782 -2.2120 5.3139 23 7 3.2625 -0.9910 5.6853 24 6 2.8134 -0.1573 4.7810 25 6 2.5192 1.2908 5.0768 26 9 3.3146 2.1041 4.2624 27 9 1.1690 1.5538 4.8219 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7515 -1.7714 -1.2057 32 1 1.6053 -0.2616 -2.1370 33 1 3.8531 0.4370 -1.3573 34 1 3.9994 -1.0728 -0.4260 35 1 3.7865 -2.3853 -2.5185 36 1 3.6402 -0.8759 -3.4505 37 1 5.8884 -0.1773 -2.6707 38 1 6.0340 -1.6869 -1.7388 39 1 5.4608 -2.3505 -4.4234 40 1 7.3652 -3.6556 -6.8311 41 1 2.2490 -1.6317 1.1525 42 1 3.8465 -2.9964 5.9584 43 1 2.7387 1.4997 6.1239 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171771537.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:39:41 Heat of formation + Delta-G solvation = -92.512863 kcal Electronic energy + Delta-G solvation = -27684.020903 eV Core-core repulsion = 23333.852711 eV Total energy + Delta-G solvation = -4350.168192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.122 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -49.10306 -47.09643 -40.78590 -39.72132 -37.04391 -35.30949 -33.36927 -32.23825 -31.31714 -30.30949 -28.16877 -27.48075 -25.20210 -24.33738 -23.08911 -21.87663 -20.93517 -20.69755 -20.11160 -19.67348 -17.79578 -17.44404 -17.02464 -16.91691 -16.78811 -16.22836 -15.68698 -15.42619 -14.96686 -14.76538 -14.55470 -14.20120 -13.98202 -13.90100 -13.55322 -13.42058 -13.20788 -13.12706 -12.99515 -12.94039 -12.66451 -12.41918 -11.81024 -11.52290 -11.41092 -11.29833 -11.03643 -10.83658 -10.74127 -10.67909 -10.43300 -10.35126 -10.28753 -10.19957 -9.97859 -9.80783 -9.68440 -9.38198 -8.86864 -6.90904 -5.76218 -3.04519 -0.46365 0.46711 0.85816 1.70754 2.65553 2.69251 2.94662 3.43237 3.48866 3.51239 3.80182 4.01758 4.22620 4.34044 4.52309 4.64054 4.75915 4.80806 4.83818 4.92278 5.04569 5.21307 5.33994 5.40812 5.52620 5.57271 5.64745 5.73697 5.84015 5.92041 6.06097 6.11525 6.27671 6.29286 6.36743 6.44573 6.77783 6.88301 6.92166 7.04772 7.71057 7.74568 8.43256 9.54079 10.13179 10.47774 11.47010 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.002149 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.041553 B =13027.019345 C =13866.057379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.094 0.906 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.713 5.713 18 C 0.587 3.413 19 O -0.499 6.499 20 C -0.248 4.248 21 S 0.213 5.787 22 C 0.032 3.968 23 N -0.455 5.455 24 C 0.052 3.948 25 C 0.356 3.644 26 F -0.180 7.180 27 F -0.182 7.182 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.017 0.983 38 H 0.015 0.985 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.398 0.602 42 H 0.215 0.785 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 2.245 25.242 29.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.112 0.888 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.218 1.218 17 N -0.365 5.365 18 C 0.370 3.630 19 O -0.374 6.374 20 C -0.374 4.374 21 S 0.470 5.530 22 C -0.264 4.264 23 N -0.168 5.168 24 C -0.088 4.088 25 C 0.299 3.701 26 F -0.161 7.161 27 F -0.164 7.164 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.035 0.965 38 H 0.033 0.967 39 H 0.216 0.784 40 H 0.064 0.936 41 H 0.232 0.768 42 H 0.231 0.769 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.314 2.384 25.125 29.521 hybrid contribution 0.863 -0.051 -0.298 0.914 sum -14.451 2.333 24.827 28.821 Atomic orbital electron populations 1.22186 0.94977 1.02224 1.02816 1.21150 0.94002 0.97870 0.83117 0.88779 1.21961 0.96967 1.00975 0.96637 1.21536 0.93871 1.01285 0.98651 1.21725 0.97294 1.00242 0.97068 1.20648 0.90970 0.95354 0.90556 1.42395 1.05349 1.64916 1.25238 1.19300 0.83919 1.28183 1.05493 0.91185 1.24753 0.97751 1.00988 0.97720 1.69671 1.32692 1.40830 1.15185 0.86108 0.85061 0.77212 0.77798 1.20549 1.21868 1.21838 1.45979 1.67286 1.13776 1.09498 1.16645 0.78390 0.86381 0.81577 1.90935 1.48566 1.13994 1.83902 1.25878 1.12828 0.98767 0.99929 1.84178 1.54742 1.04766 1.09321 1.28743 1.02402 0.97195 0.98020 1.65849 1.14421 1.01953 1.34575 1.21093 1.01219 0.98198 0.88334 1.19445 0.73824 0.82249 0.94580 1.93075 1.73418 1.73359 1.76282 1.93056 1.33353 1.94168 1.95777 0.91171 0.92421 0.92064 0.91258 0.89807 0.91795 0.92312 0.92110 0.91957 0.96544 0.96668 0.78351 0.93588 0.76789 0.76862 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.48 37.16 0.35 -1.04 16 2 C 0.14 1.35 2.57 -67.93 -0.17 1.18 16 3 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 4 C -0.13 -1.19 4.75 -26.73 -0.13 -1.32 16 5 C -0.12 -1.39 5.10 -26.73 -0.14 -1.52 16 6 C -0.13 -1.95 5.33 -26.73 -0.14 -2.09 16 7 C 0.15 3.11 6.26 -4.04 -0.03 3.09 16 8 N -0.74 -19.09 5.60 -59.90 -0.34 -19.42 16 9 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 10 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 12 N -0.93 -28.60 13.06 55.49 0.72 -27.87 16 13 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 17 N -0.71 -6.72 4.53 -55.12 -0.25 -6.97 16 18 C 0.59 6.83 7.70 -12.85 -0.10 6.73 16 19 O -0.50 -7.36 12.71 5.20 0.07 -7.29 16 20 C -0.25 -2.47 6.44 -37.10 -0.24 -2.71 16 21 S 0.21 1.28 22.35 -107.50 -2.40 -1.12 16 22 C 0.03 0.18 12.22 51.75 0.63 0.81 16 23 N -0.46 -3.97 10.50 -11.53 -0.12 -4.09 16 24 C 0.05 0.53 6.25 -83.89 -0.52 0.01 16 25 C 0.36 3.74 5.07 36.01 0.18 3.92 16 26 F -0.18 -2.35 15.76 2.25 0.04 -2.31 16 27 F -0.18 -2.25 15.77 2.25 0.04 -2.22 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.38 10.36 7.67 -40.82 -0.31 10.04 16 40 H 0.25 7.47 8.31 -40.82 -0.34 7.14 16 41 H 0.40 2.98 7.79 -40.82 -0.32 2.66 16 42 H 0.21 0.35 8.06 -52.49 -0.42 -0.07 16 43 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 382.37 15.07 5.76 5.76 Total: -1.00 -35.59 382.37 -8.10 -43.70 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.05 Total: 4.71 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -0.55 Total: -0.48 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.02 Total: -58.36 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: 0.07 Total: -7.29 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.07 Total: -4.53 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.40 Total: -1.12 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.59 -8.10 -43.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171771537.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.817 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds