Wall clock time and date at job start Wed Apr 1 2020 06:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.99374 * 2 1 4 4 C 1.54323 * 109.88349 * 121.09206 * 2 1 3 5 5 H 1.08997 * 110.72189 * 215.76823 * 4 2 1 6 6 N 1.46909 * 110.71795 * 338.86633 * 4 2 1 7 7 C 1.46904 * 110.99633 * 198.49624 * 6 4 2 8 8 C 1.50699 * 109.46614 * 179.97438 * 7 6 4 9 9 O 1.21292 * 120.00387 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99614 * 179.97438 * 8 7 6 11 11 C 1.37109 * 119.99888 * 180.02562 * 10 8 7 12 12 H 1.07997 * 119.99629 * 0.02562 * 11 10 8 13 13 C 1.38948 * 119.99756 * 179.97438 * 11 10 8 14 14 N 1.31404 * 120.00225 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99716 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46931 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47053 * 120.00484 * 15 13 11 18 18 H 1.48500 * 109.47146 * 240.00360 * 15 13 11 19 19 C 1.55274 * 103.00568 * 97.30721 * 4 2 1 20 20 C 1.54907 * 101.52780 * 35.36359 * 19 4 2 21 21 N 1.47023 * 109.88570 * 238.90554 * 2 1 3 22 22 C 1.34768 * 125.64871 * 59.54005 * 21 2 1 23 23 O 1.21287 * 120.00393 * 0.02562 * 22 21 2 24 24 C 1.50708 * 119.99863 * 180.02562 * 22 21 2 25 25 S 1.81397 * 109.46950 * 180.02562 * 24 22 21 26 26 C 1.81405 * 101.92142 * 180.02562 * 25 24 22 27 27 O 1.42104 * 108.57759 * 294.48448 * 25 24 22 28 28 O 1.42101 * 108.58316 * 65.51392 * 25 24 22 29 29 H 1.09003 * 109.46851 * 187.12768 * 1 2 3 30 30 H 1.08993 * 109.47580 * 307.12904 * 1 2 3 31 31 H 1.09008 * 109.46855 * 67.12951 * 1 2 3 32 32 H 1.00898 * 110.99842 * 322.44499 * 6 4 2 33 33 H 1.08997 * 109.46931 * 300.00005 * 7 6 4 34 34 H 1.09004 * 109.46849 * 60.00096 * 7 6 4 35 35 H 0.96996 * 120.00351 * 0.02562 * 10 8 7 36 36 H 0.97001 * 120.00525 * 179.97438 * 14 13 11 37 37 H 1.09002 * 110.95777 * 277.33362 * 19 4 2 38 38 H 1.08997 * 111.10163 * 153.45556 * 19 4 2 39 39 H 1.09003 * 110.36664 * 204.23468 * 20 19 4 40 40 H 1.08993 * 110.36875 * 82.02203 * 20 19 4 41 41 H 1.09003 * 109.46725 * 300.00263 * 24 22 21 42 42 H 1.08995 * 109.46753 * 59.99896 * 24 22 21 43 43 H 1.08995 * 109.47107 * 59.99209 * 26 25 24 44 44 H 1.08991 * 109.47355 * 180.02562 * 26 25 24 45 45 H 1.09007 * 109.46481 * 299.99789 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7494 1.2427 5 1 2.9639 -0.2812 1.6201 6 7 1.0264 -0.8027 2.2904 7 6 1.6227 -1.1042 3.5987 8 6 0.5398 -1.1499 4.6457 9 8 -0.6151 -0.9513 4.3328 10 7 0.8546 -1.4123 5.9296 11 6 -0.1306 -1.4545 6.8822 12 1 -1.1589 -1.2777 6.6035 13 6 0.1939 -1.7256 8.2057 14 7 1.4450 -1.9412 8.5446 15 14 -1.1484 -1.7823 9.5037 16 1 -2.4624 -1.5069 8.8691 17 1 -1.1742 -3.1282 10.1306 18 1 -0.8756 -0.7572 10.5430 19 6 2.3547 -2.1704 0.6932 20 6 2.8570 -1.8497 -0.7367 21 7 2.0301 -0.7140 -1.1839 22 6 1.7752 -0.3847 -2.4656 23 8 1.0787 0.5757 -2.7181 24 6 2.3556 -1.2097 -3.5854 25 16 1.8353 -0.5171 -5.1791 26 6 2.6322 -1.6446 -6.3557 27 8 0.4266 -0.6617 -5.2974 28 8 2.4149 0.7723 -5.3234 29 1 -0.3633 -1.0198 0.1275 30 1 -0.3634 0.6203 0.8193 31 1 -0.3633 0.3994 -0.9470 32 1 0.4986 0.0567 2.3230 33 1 2.1269 -2.0695 3.5543 34 1 2.3443 -0.3289 3.8563 35 1 1.7782 -1.5715 6.1798 36 1 1.6717 -2.1301 9.4687 37 1 1.4487 -2.7757 0.6625 38 1 3.1313 -2.6619 1.2791 39 1 2.7090 -2.7079 -1.3922 40 1 3.9094 -1.5671 -0.7146 41 1 3.4436 -1.1952 -3.5210 42 1 2.0003 -2.2367 -3.5017 43 1 2.2682 -2.6586 -6.1907 44 1 2.3956 -1.3343 -7.3734 45 1 3.7121 -1.6180 -6.2099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178234038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:04 Heat of formation + Delta-G solvation = -119.717941 kcal Electronic energy + Delta-G solvation = -28413.286955 eV Core-core repulsion = 24173.026578 eV Total energy + Delta-G solvation = -4240.260377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -40.70808 -38.64621 -37.88704 -37.33123 -36.32478 -34.92670 -33.86192 -32.06734 -31.27510 -31.23174 -30.25942 -29.46672 -26.72964 -25.32360 -23.90075 -23.45265 -20.63710 -19.52222 -19.29069 -19.12748 -17.98904 -17.88432 -17.07303 -16.83208 -16.41032 -16.26512 -16.01387 -15.56557 -15.34810 -15.05708 -14.54424 -14.16214 -13.92742 -13.79782 -13.75181 -13.74839 -13.58233 -13.23630 -13.08359 -12.53383 -12.43134 -12.38305 -12.31982 -12.26685 -12.01649 -11.68202 -11.61672 -11.56563 -11.45060 -11.24419 -11.13623 -10.97721 -10.76689 -10.36716 -10.36417 -10.25389 -9.55244 -9.05411 -8.52565 -8.18056 -7.99843 -6.45177 -3.85947 -0.57369 2.08805 2.27049 2.39978 3.14272 3.25277 3.29460 3.32660 3.53003 3.83405 3.86387 3.99818 4.12310 4.23909 4.24918 4.30479 4.35536 4.54943 4.58026 4.85471 4.89754 5.02952 5.08441 5.13145 5.16470 5.24260 5.38538 5.45463 5.50194 5.69419 5.75331 5.89705 5.95554 6.05276 6.14772 6.22271 6.46713 7.03237 7.11152 7.52291 7.52658 7.59393 8.03074 8.57335 9.14741 9.50464 10.01580 10.72554 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.038153 B = 0.001763 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.708425 B =15880.208704 C =16197.698314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.135 3.865 3 H 0.079 0.921 4 C 0.077 3.923 5 H 0.060 0.940 6 N -0.654 5.654 7 C 0.050 3.950 8 C 0.440 3.560 9 O -0.582 6.582 10 N -0.563 5.563 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.124 4.124 20 C 0.094 3.906 21 N -0.601 5.601 22 C 0.557 3.443 23 O -0.525 6.525 24 C -0.657 4.657 25 S 2.454 3.546 26 C -0.663 4.663 27 O -0.919 6.919 28 O -0.921 6.921 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.355 0.645 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.186 -3.443 -25.621 28.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.032 3.968 3 H 0.097 0.903 4 C -0.034 4.034 5 H 0.078 0.922 6 N -0.289 5.289 7 C -0.083 4.083 8 C 0.225 3.775 9 O -0.466 6.466 10 N -0.200 5.200 11 C -0.428 4.428 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.162 4.162 20 C -0.029 4.029 21 N -0.334 5.334 22 C 0.343 3.657 23 O -0.403 6.403 24 C -0.784 4.784 25 S 2.630 3.370 26 C -0.812 4.812 27 O -0.916 6.916 28 O -0.918 6.918 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.178 0.822 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.176 0.824 42 H 0.177 0.823 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.396 -2.734 -26.105 27.878 hybrid contribution 1.265 -0.346 1.377 1.902 sum 10.660 -3.080 -24.727 27.103 Atomic orbital electron populations 1.22026 0.93065 1.03850 1.02773 1.21724 0.96370 0.95454 0.83237 0.90327 1.22583 0.94130 0.95562 0.91175 0.92237 1.60310 1.23054 1.42556 1.03015 1.21727 0.96025 1.01431 0.89103 1.19768 0.89625 0.84678 0.83380 1.90537 1.20534 1.54787 1.80729 1.41867 1.10545 1.61782 1.05811 1.19761 0.90988 1.45106 0.86986 0.87829 1.25263 0.97221 0.97189 0.98286 1.69612 1.16939 1.48391 1.19370 0.85797 0.80729 0.77748 0.80058 1.19191 1.20747 1.20762 1.22908 1.02748 0.97281 0.93289 1.22480 0.94891 0.88716 0.96769 1.48325 1.50070 1.30501 1.04540 1.18666 0.80693 0.84234 0.82090 1.90875 1.38332 1.28305 1.82755 1.30898 1.13592 1.13639 1.20252 1.07233 0.76216 0.76564 0.76980 1.30396 1.14695 1.17896 1.18182 1.93613 1.26963 1.86449 1.84574 1.93604 1.79627 1.34162 1.84419 0.91021 0.90984 0.91364 0.82248 0.89541 0.93731 0.77487 0.91915 0.88965 0.89644 0.90248 0.90819 0.82384 0.82274 0.85159 0.84819 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 8.30 37.16 0.31 -1.81 16 2 C 0.14 1.56 3.41 -66.95 -0.23 1.33 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 4 C 0.08 0.84 3.10 -65.81 -0.20 0.63 16 5 H 0.06 0.60 7.92 -51.93 -0.41 0.18 16 6 N -0.65 -9.59 5.12 -105.98 -0.54 -10.13 16 7 C 0.05 0.81 6.02 -4.97 -0.03 0.78 16 8 C 0.44 9.99 7.82 -10.99 -0.09 9.91 16 9 O -0.58 -15.39 15.78 5.55 0.09 -15.30 16 10 N -0.56 -13.88 5.29 -10.96 -0.06 -13.94 16 11 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 12 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 15 Si 0.93 20.83 29.55 -169.99 -5.02 15.80 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 19 C -0.12 -1.08 6.65 -24.52 -0.16 -1.25 16 20 C 0.09 0.63 6.69 -2.53 -0.02 0.61 16 21 N -0.60 -6.03 3.08 -163.02 -0.50 -6.53 16 22 C 0.56 6.19 7.64 -10.99 -0.08 6.11 16 23 O -0.53 -8.13 14.44 2.55 0.04 -8.10 16 24 C -0.66 -3.49 5.30 36.01 0.19 -3.30 16 25 S 2.45 18.13 4.60 -107.50 -0.49 17.64 16 26 C -0.66 -1.33 10.62 101.05 1.07 -0.26 16 27 O -0.92 -11.02 17.94 -59.53 -1.07 -12.08 16 28 O -0.92 -10.77 17.95 -59.52 -1.07 -11.84 16 29 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 30 H 0.07 0.96 6.72 -51.93 -0.35 0.61 16 31 H 0.07 1.00 6.54 -51.92 -0.34 0.66 16 32 H 0.35 5.56 6.41 -39.29 -0.25 5.31 16 33 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 34 H 0.04 0.65 8.09 -51.93 -0.42 0.23 16 35 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 36 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.34 7.48 -51.93 -0.39 -0.05 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.16 0.23 8.14 -51.92 -0.42 -0.19 16 42 H 0.16 0.29 7.85 -51.93 -0.41 -0.12 16 43 H 0.13 0.00 8.14 -51.93 -0.42 -0.43 16 44 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.13 -0.03 8.14 -51.92 -0.42 -0.45 16 LS Contribution 384.47 15.07 5.79 5.79 Total: -1.00 -40.05 384.47 -8.22 -48.26 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.62 Total: 8.94 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 0.52 Total: 4.88 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.38 Total: -54.00 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -2.01 Total: -47.33 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 18.13 SS G_CDS: -0.49 Total: 17.64 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -40.05 -8.22 -48.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178234038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.455 kcal (2) G-P(sol) polarization free energy of solvation -40.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.25 seconds