Wall clock time and date at job start Wed Apr 1 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.99374 * 2 1 4 4 C 1.54323 * 109.88349 * 121.09206 * 2 1 3 5 5 H 1.08997 * 110.72189 * 215.76823 * 4 2 1 6 6 N 1.46909 * 110.71795 * 338.86633 * 4 2 1 7 7 C 1.46904 * 110.99633 * 198.49624 * 6 4 2 8 8 C 1.50699 * 109.46614 * 179.97438 * 7 6 4 9 9 O 1.21292 * 120.00387 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99614 * 179.97438 * 8 7 6 11 11 C 1.37109 * 119.99888 * 180.02562 * 10 8 7 12 12 H 1.07997 * 119.99629 * 0.02562 * 11 10 8 13 13 C 1.38948 * 119.99756 * 179.97438 * 11 10 8 14 14 N 1.31404 * 120.00225 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99716 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46931 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47053 * 120.00484 * 15 13 11 18 18 H 1.48500 * 109.47146 * 240.00360 * 15 13 11 19 19 C 1.55274 * 103.00568 * 97.30721 * 4 2 1 20 20 C 1.54907 * 101.52780 * 35.36359 * 19 4 2 21 21 N 1.47023 * 109.88570 * 238.90554 * 2 1 3 22 22 C 1.34768 * 125.64871 * 59.54005 * 21 2 1 23 23 O 1.21287 * 120.00393 * 0.02562 * 22 21 2 24 24 C 1.50708 * 119.99863 * 180.02562 * 22 21 2 25 25 S 1.81397 * 109.46950 * 180.02562 * 24 22 21 26 26 C 1.81405 * 101.92142 * 180.02562 * 25 24 22 27 27 O 1.42104 * 108.57759 * 294.48448 * 25 24 22 28 28 O 1.42101 * 108.58316 * 65.51392 * 25 24 22 29 29 H 1.09003 * 109.46851 * 187.12768 * 1 2 3 30 30 H 1.08993 * 109.47580 * 307.12904 * 1 2 3 31 31 H 1.09008 * 109.46855 * 67.12951 * 1 2 3 32 32 H 1.00898 * 110.99842 * 322.44499 * 6 4 2 33 33 H 1.08997 * 109.46931 * 300.00005 * 7 6 4 34 34 H 1.09004 * 109.46849 * 60.00096 * 7 6 4 35 35 H 0.96996 * 120.00351 * 0.02562 * 10 8 7 36 36 H 0.97001 * 120.00525 * 179.97438 * 14 13 11 37 37 H 1.09002 * 110.95777 * 277.33362 * 19 4 2 38 38 H 1.08997 * 111.10163 * 153.45556 * 19 4 2 39 39 H 1.09003 * 110.36664 * 204.23468 * 20 19 4 40 40 H 1.08993 * 110.36875 * 82.02203 * 20 19 4 41 41 H 1.09003 * 109.46725 * 300.00263 * 24 22 21 42 42 H 1.08995 * 109.46753 * 59.99896 * 24 22 21 43 43 H 1.08995 * 109.47107 * 59.99209 * 26 25 24 44 44 H 1.08991 * 109.47355 * 180.02562 * 26 25 24 45 45 H 1.09007 * 109.46481 * 299.99789 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7494 1.2427 5 1 2.9639 -0.2812 1.6201 6 7 1.0264 -0.8027 2.2904 7 6 1.6227 -1.1042 3.5987 8 6 0.5398 -1.1499 4.6457 9 8 -0.6151 -0.9513 4.3328 10 7 0.8546 -1.4123 5.9296 11 6 -0.1306 -1.4545 6.8822 12 1 -1.1589 -1.2777 6.6035 13 6 0.1939 -1.7256 8.2057 14 7 1.4450 -1.9412 8.5446 15 14 -1.1484 -1.7823 9.5037 16 1 -2.4624 -1.5069 8.8691 17 1 -1.1742 -3.1282 10.1306 18 1 -0.8756 -0.7572 10.5430 19 6 2.3547 -2.1704 0.6932 20 6 2.8570 -1.8497 -0.7367 21 7 2.0301 -0.7140 -1.1839 22 6 1.7752 -0.3847 -2.4656 23 8 1.0787 0.5757 -2.7181 24 6 2.3556 -1.2097 -3.5854 25 16 1.8353 -0.5171 -5.1791 26 6 2.6322 -1.6446 -6.3557 27 8 0.4266 -0.6617 -5.2974 28 8 2.4149 0.7723 -5.3234 29 1 -0.3633 -1.0198 0.1275 30 1 -0.3634 0.6203 0.8193 31 1 -0.3633 0.3994 -0.9470 32 1 0.4986 0.0567 2.3230 33 1 2.1269 -2.0695 3.5543 34 1 2.3443 -0.3289 3.8563 35 1 1.7782 -1.5715 6.1798 36 1 1.6717 -2.1301 9.4687 37 1 1.4487 -2.7757 0.6625 38 1 3.1313 -2.6619 1.2791 39 1 2.7090 -2.7079 -1.3922 40 1 3.9094 -1.5671 -0.7146 41 1 3.4436 -1.1952 -3.5210 42 1 2.0003 -2.2367 -3.5017 43 1 2.2682 -2.6586 -6.1907 44 1 2.3956 -1.3343 -7.3734 45 1 3.7121 -1.6180 -6.2099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178234038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:03 Heat of formation + Delta-G solvation = -155.459717 kcal Electronic energy + Delta-G solvation = -28414.836835 eV Core-core repulsion = 24173.026578 eV Total energy + Delta-G solvation = -4241.810257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.52898 -40.16444 -39.09142 -37.99045 -36.97736 -36.23386 -35.61371 -33.30675 -32.85528 -32.02843 -30.79270 -29.96083 -28.15759 -26.56440 -25.40711 -24.18746 -21.47464 -21.04714 -20.33177 -19.90868 -19.69754 -18.63254 -17.89178 -17.65254 -17.39579 -17.02154 -16.92540 -16.79560 -16.37312 -16.27470 -15.92672 -15.62751 -15.35180 -14.69505 -14.50119 -14.40596 -14.02938 -13.94167 -13.86892 -13.72223 -13.50288 -13.41153 -13.32634 -13.16028 -13.06462 -13.00422 -12.90620 -12.71811 -12.43615 -12.39605 -12.12820 -12.09827 -11.86480 -11.67467 -11.62691 -11.50941 -11.24800 -10.33729 -10.00632 -9.84034 -9.35923 -8.46872 -5.94975 -1.03232 1.33961 1.36302 1.42029 1.55618 1.68916 1.85593 2.06648 2.29264 2.78894 2.92335 3.10844 3.20833 3.25455 3.49756 3.57471 3.64280 3.95024 4.01787 4.14821 4.23787 4.27072 4.30581 4.32637 4.33856 4.43449 4.51721 4.57847 4.62538 4.68511 4.75430 4.98422 5.01710 5.03964 5.20759 5.26797 5.36319 5.41831 5.89240 6.10621 6.27649 6.34577 6.60987 6.83223 7.13688 7.57558 8.13391 8.70598 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.038153 B = 0.001763 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.708425 B =15880.208704 C =16197.698314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.134 3.866 3 H 0.071 0.929 4 C 0.079 3.921 5 H 0.080 0.920 6 N -0.670 5.670 7 C 0.067 3.933 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.573 5.573 11 C -0.333 4.333 12 H 0.076 0.924 13 C -0.012 4.012 14 N -0.919 5.919 15 Si 0.990 3.010 16 H -0.276 1.276 17 H -0.270 1.270 18 H -0.271 1.271 19 C -0.122 4.122 20 C 0.093 3.907 21 N -0.601 5.601 22 C 0.537 3.463 23 O -0.585 6.585 24 C -0.639 4.639 25 S 2.429 3.571 26 C -0.624 4.624 27 O -0.987 6.987 28 O -0.984 6.984 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.345 0.655 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.208 0.792 42 H 0.203 0.797 43 H 0.163 0.837 44 H 0.139 0.861 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.609 -6.245 -26.421 30.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.030 3.970 3 H 0.089 0.911 4 C -0.031 4.031 5 H 0.098 0.902 6 N -0.304 5.304 7 C -0.065 4.065 8 C 0.224 3.776 9 O -0.512 6.512 10 N -0.210 5.210 11 C -0.462 4.462 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.201 1.201 17 H -0.195 1.195 18 H -0.196 1.196 19 C -0.160 4.160 20 C -0.028 4.028 21 N -0.333 5.333 22 C 0.326 3.674 23 O -0.467 6.467 24 C -0.767 4.767 25 S 2.614 3.386 26 C -0.778 4.778 27 O -0.984 6.984 28 O -0.982 6.982 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.166 0.834 33 H 0.130 0.870 34 H 0.087 0.913 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.123 0.877 41 H 0.225 0.775 42 H 0.220 0.780 43 H 0.182 0.818 44 H 0.158 0.842 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 12.848 -5.530 -26.894 30.314 hybrid contribution 0.240 0.468 1.574 1.660 sum 13.088 -5.062 -25.320 28.949 Atomic orbital electron populations 1.21886 0.95188 1.02589 1.01167 1.21597 0.94673 0.95875 0.84903 0.91061 1.22678 0.93454 0.97508 0.89468 0.90236 1.60329 1.24588 1.42317 1.03154 1.21576 0.93707 1.03632 0.87610 1.20947 0.90607 0.82197 0.83819 1.90510 1.23105 1.56055 1.81494 1.41921 1.10238 1.62570 1.06298 1.19674 0.90700 1.47331 0.88542 0.90549 1.25985 0.99407 0.96272 0.99496 1.69659 1.17983 1.48170 1.20148 0.84906 0.77731 0.78339 0.77572 1.20052 1.19544 1.19648 1.22936 1.02753 0.95307 0.95045 1.22813 0.95606 0.88611 0.95753 1.48442 1.49989 1.31095 1.03809 1.19691 0.80101 0.84193 0.83430 1.90859 1.40948 1.31141 1.83744 1.30783 1.16294 1.14132 1.15533 1.07369 0.75344 0.77159 0.78736 1.30081 1.15936 1.16659 1.15108 1.93535 1.31420 1.87578 1.85886 1.93527 1.79939 1.39039 1.85652 0.92119 0.91921 0.93460 0.83450 0.86994 0.91338 0.76859 0.91305 0.90913 0.87371 0.86732 0.87736 0.77497 0.77978 0.81838 0.84241 0.81613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 8.30 71.98 0.60 -3.70 16 2 C 0.13 3.06 3.41 45.34 0.15 3.21 16 3 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.08 1.57 3.10 46.14 0.14 1.71 16 5 H 0.08 1.32 7.92 -2.39 -0.02 1.30 16 6 N -0.67 -19.27 5.12 -489.21 -2.51 -21.77 16 7 C 0.07 2.06 6.02 85.56 0.52 2.58 16 8 C 0.44 20.04 7.82 87.66 0.69 20.73 16 9 O -0.63 -34.23 15.78 -3.07 -0.05 -34.28 16 10 N -0.57 -28.56 5.29 -306.98 -1.62 -30.19 16 11 C -0.33 -18.71 9.68 84.04 0.81 -17.89 16 12 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 13 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 14 N -0.92 -48.60 13.05 21.66 0.28 -48.32 16 15 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 19 C -0.12 -1.70 6.65 32.03 0.21 -1.49 16 20 C 0.09 0.79 6.69 86.85 0.58 1.38 16 21 N -0.60 -10.89 3.08 -788.05 -2.43 -13.32 16 22 C 0.54 11.47 7.64 87.66 0.67 12.14 16 23 O -0.59 -19.37 14.44 -0.18 0.00 -19.38 16 24 C -0.64 -4.54 5.30 71.24 0.38 -4.17 16 25 S 2.43 34.14 4.60 -56.49 -0.26 33.88 16 26 C -0.62 0.39 10.62 113.37 1.20 1.59 16 27 O -0.99 -25.20 17.94 -125.74 -2.26 -27.46 16 28 O -0.98 -24.17 17.95 -125.76 -2.26 -26.43 16 29 H 0.06 1.82 8.05 -2.39 -0.02 1.80 16 30 H 0.06 1.85 6.72 -2.39 -0.02 1.83 16 31 H 0.05 1.53 6.54 -2.38 -0.02 1.52 16 32 H 0.34 11.11 6.41 -89.70 -0.57 10.54 16 33 H 0.11 2.93 8.08 -2.39 -0.02 2.91 16 34 H 0.07 1.82 8.09 -2.39 -0.02 1.80 16 35 H 0.40 18.58 7.90 -92.71 -0.73 17.85 16 36 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 39 H 0.11 0.23 7.48 -2.39 -0.02 0.22 16 40 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.21 -0.65 8.14 -2.39 -0.02 -0.67 16 42 H 0.20 -0.38 7.85 -2.39 -0.02 -0.40 16 43 H 0.16 -1.03 8.14 -2.39 -0.02 -1.05 16 44 H 0.14 -0.02 8.14 -2.40 -0.02 -0.04 16 45 H 0.17 -1.15 8.14 -2.39 -0.02 -1.17 16 Total: -1.00 -97.62 384.47 -2.93 -100.55 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: -0.28 Total: 26.06 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 6.42 Total: 15.94 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -6.27 Total: -113.59 kcal Atomic # 8 Polarization: -102.98 SS G_CDS: -4.56 Total: -107.54 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 34.14 SS G_CDS: -0.26 Total: 33.88 kcal Total: -97.62 -2.93 -100.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178234038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.913 kcal (2) G-P(sol) polarization free energy of solvation -97.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds