Wall clock time and date at job start Wed Apr 1 2020 07:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47219 * 2 1 4 4 C 1.50698 * 109.46920 * 119.99488 * 2 1 3 5 5 O 1.21287 * 119.99733 * 99.99771 * 4 2 1 6 6 N 1.34774 * 120.00615 * 280.00221 * 4 2 1 7 7 C 1.47422 * 125.64368 * 0.02562 * 6 4 2 8 8 C 1.54912 * 104.83500 * 155.83600 * 7 6 4 9 9 C 1.55162 * 101.57717 * 37.00946 * 8 7 6 10 10 H 1.09002 * 110.72059 * 82.86237 * 9 8 7 11 11 N 1.46904 * 110.71777 * 205.95855 * 9 8 7 12 12 C 1.46900 * 110.99872 * 271.15451 * 11 9 8 13 13 C 1.50700 * 109.47094 * 179.97438 * 12 11 9 14 14 O 1.21301 * 119.99887 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00226 * 179.97438 * 13 12 11 16 16 C 1.37095 * 120.00195 * 179.97438 * 15 13 12 17 17 H 1.08003 * 119.99958 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00102 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00162 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00188 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47292 * 89.99230 * 20 18 16 22 22 H 1.48497 * 109.47320 * 209.99953 * 20 18 16 23 23 H 1.48506 * 109.46565 * 329.99662 * 20 18 16 24 24 C 1.47018 * 125.65557 * 179.97438 * 6 4 2 25 25 S 1.81395 * 109.47009 * 239.99666 * 2 1 3 26 26 C 1.81395 * 101.92446 * 60.00454 * 25 2 1 27 27 O 1.42104 * 108.57698 * 174.48923 * 25 2 1 28 28 O 1.42096 * 108.58223 * 305.51184 * 25 2 1 29 29 H 1.08995 * 109.47568 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47156 * 300.00341 * 1 2 3 31 31 H 1.08997 * 109.46992 * 60.00050 * 1 2 3 32 32 H 1.09003 * 110.37241 * 36.99969 * 7 6 4 33 33 H 1.09001 * 110.37136 * 274.67499 * 7 6 4 34 34 H 1.08999 * 111.00244 * 278.93675 * 8 7 6 35 35 H 1.08996 * 111.00556 * 155.07846 * 8 7 6 36 36 H 1.00897 * 110.99650 * 147.20225 * 11 9 8 37 37 H 1.08993 * 109.47330 * 300.00361 * 12 11 9 38 38 H 1.09000 * 109.46965 * 60.00477 * 12 11 9 39 39 H 0.96998 * 119.99895 * 0.02562 * 15 13 12 40 40 H 0.96997 * 120.00440 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.88087 * 61.67301 * 24 6 4 42 42 H 1.09003 * 109.87911 * 300.51453 * 24 6 4 43 43 H 1.08998 * 109.47323 * 59.99263 * 26 25 2 44 44 H 1.08998 * 109.47580 * 179.97438 * 26 25 2 45 45 H 1.09007 * 109.46817 * 299.99738 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.4063 -1.8616 1.1559 6 7 2.0658 -0.0663 2.4140 7 6 1.6428 1.3267 2.6463 8 6 1.2829 1.3860 4.1519 9 6 2.3596 0.4531 4.7665 10 1 3.2944 0.9921 4.9206 11 7 1.8836 -0.1295 6.0282 12 6 2.2159 0.7373 7.1667 13 6 1.7125 0.1087 8.4405 14 8 1.1341 -0.9569 8.4035 15 7 1.9057 0.7300 9.6208 16 6 1.4472 0.1584 10.7795 17 1 0.9315 -0.7900 10.7465 18 6 1.6459 0.7991 11.9962 19 7 1.2069 0.2510 13.1069 20 14 2.5372 2.4398 12.0533 21 1 1.5527 3.5430 11.9156 22 1 3.2499 2.5712 13.3494 23 1 3.5175 2.5094 10.9400 24 6 2.5292 -0.6368 3.6872 25 16 2.1346 -0.8552 -1.4810 26 6 1.4230 0.1513 -2.8118 27 8 3.5496 -0.7331 -1.5283 28 8 1.5479 -2.1485 -1.5283 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7701 1.5647 2.0381 33 1 2.4596 2.0133 2.4243 34 1 0.2806 0.9961 4.3296 35 1 1.3796 2.4011 4.5370 36 1 2.2550 -1.0583 6.1604 37 1 3.2971 0.8618 7.2252 38 1 1.7449 1.7110 7.0317 39 1 2.3685 1.5819 9.6504 40 1 1.3460 0.6981 13.9564 41 1 3.5791 -0.9186 3.6068 42 1 1.9277 -1.5091 3.9433 43 1 1.7894 1.1745 -2.7291 44 1 1.7160 -0.2623 -3.7767 45 1 0.3361 0.1469 -2.7291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183656439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:08:13 Heat of formation + Delta-G solvation = -116.347138 kcal Electronic energy + Delta-G solvation = -28290.651931 eV Core-core repulsion = 24050.537723 eV Total energy + Delta-G solvation = -4240.114208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -40.66277 -38.73903 -37.95157 -37.40495 -36.37498 -35.08705 -34.15569 -33.79856 -31.71685 -30.86539 -30.05641 -29.19845 -26.54794 -25.47334 -23.78096 -23.54462 -20.88593 -20.33009 -19.43396 -19.05257 -18.41899 -18.06752 -17.45747 -16.69514 -16.53543 -16.23447 -16.02017 -15.46130 -15.38056 -15.28583 -14.86014 -14.29567 -14.04245 -13.89555 -13.81639 -13.73997 -13.51294 -13.25850 -13.19249 -13.09705 -12.62024 -12.56715 -12.51833 -12.42606 -12.33979 -12.21878 -11.98955 -11.71974 -11.50120 -11.40190 -11.24750 -11.09656 -11.06523 -10.63740 -10.44916 -10.01431 -9.61858 -9.11282 -8.67567 -8.33394 -8.22124 -6.34732 -3.86562 -0.60796 2.00745 2.21215 2.32642 2.98248 3.02843 3.11626 3.23530 3.46682 3.67807 3.71519 3.91299 3.96390 4.06401 4.20541 4.22312 4.26099 4.30198 4.46682 4.70242 4.73359 4.81581 4.85526 4.91611 5.06552 5.08127 5.11178 5.19767 5.41577 5.43109 5.50524 5.57150 5.60757 5.70309 5.78157 5.83398 5.96022 6.92981 6.95671 7.39141 7.52855 7.53580 8.10161 8.55068 8.90870 9.37891 9.77314 10.78279 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.034841 B = 0.001771 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.466352 B =15809.498980 C =16019.988048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.614 4.614 3 H 0.154 0.846 4 C 0.558 3.442 5 O -0.523 6.523 6 N -0.602 5.602 7 C 0.091 3.909 8 C -0.124 4.124 9 C 0.074 3.926 10 H 0.063 0.937 11 N -0.657 5.657 12 C 0.049 3.951 13 C 0.448 3.552 14 O -0.564 6.564 15 N -0.589 5.589 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.880 5.880 20 Si 0.881 3.119 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.270 1.270 24 C 0.104 3.896 25 S 2.448 3.552 26 C -0.661 4.661 27 O -0.928 6.928 28 O -0.910 6.910 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.356 0.644 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.370 0.630 40 H 0.274 0.726 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.965 10.178 -31.250 32.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.721 4.721 3 H 0.172 0.828 4 C 0.343 3.657 5 O -0.400 6.400 6 N -0.336 5.336 7 C -0.032 4.032 8 C -0.163 4.163 9 C -0.037 4.037 10 H 0.081 0.919 11 N -0.290 5.290 12 C -0.084 4.084 13 C 0.234 3.766 14 O -0.445 6.445 15 N -0.229 5.229 16 C -0.435 4.435 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.520 5.520 20 Si 0.707 3.293 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.018 4.018 25 S 2.625 3.375 26 C -0.810 4.810 27 O -0.925 6.925 28 O -0.907 6.907 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.177 0.823 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.148 0.852 44 H 0.153 0.847 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.639 8.296 -31.220 32.310 hybrid contribution 1.165 2.255 0.512 2.589 sum 1.804 10.551 -30.708 32.520 Atomic orbital electron populations 1.21671 0.87401 1.05577 1.05158 1.30710 1.09172 1.15439 1.16819 0.82782 1.18721 0.78495 0.85783 0.82651 1.90900 1.48109 1.16206 1.84741 1.48150 1.63519 1.14231 1.07652 1.22579 1.00097 0.82382 0.98095 1.22900 1.00927 1.00458 0.91973 1.22562 0.96681 0.94734 0.89734 0.91910 1.60150 1.63514 1.05988 0.99383 1.21755 0.98582 0.97424 0.90632 1.19658 0.85556 0.87369 0.84039 1.90584 1.44987 1.22778 1.86190 1.42195 1.52761 1.21166 1.06734 1.19433 1.34519 1.07479 0.82040 0.86251 1.25049 0.97743 0.98318 0.95067 1.69618 1.45375 1.38876 0.98094 0.86661 0.80064 0.84118 0.78446 1.19597 1.20168 1.19560 1.22159 1.00546 0.97377 0.81762 1.07506 0.76002 0.76739 0.77293 1.30397 1.14383 1.16638 1.19632 1.93602 1.26762 1.86718 1.85399 1.93607 1.79067 1.33196 1.84837 0.89411 0.89536 0.89924 0.89949 0.90772 0.88903 0.89648 0.82320 0.93473 0.89357 0.79698 0.91567 0.90700 0.89485 0.85150 0.84741 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.56 8.82 37.16 0.33 -0.24 16 2 C -0.61 -3.80 2.39 -27.88 -0.07 -3.87 16 3 H 0.15 0.33 7.68 -51.92 -0.40 -0.07 16 4 C 0.56 6.27 7.02 -10.99 -0.08 6.19 16 5 O -0.52 -8.27 15.97 -3.36 -0.05 -8.32 16 6 N -0.60 -5.88 3.33 -170.52 -0.57 -6.44 16 7 C 0.09 0.57 6.39 -2.53 -0.02 0.55 16 8 C -0.12 -0.99 6.75 -24.58 -0.17 -1.15 16 9 C 0.07 0.74 3.25 -65.88 -0.21 0.53 16 10 H 0.06 0.56 7.86 -51.93 -0.41 0.15 16 11 N -0.66 -9.15 5.95 -106.05 -0.63 -9.78 16 12 C 0.05 0.73 6.04 -4.98 -0.03 0.70 16 13 C 0.45 9.76 7.82 -10.99 -0.09 9.67 16 14 O -0.56 -14.77 15.78 5.54 0.09 -14.69 16 15 N -0.59 -13.59 5.09 -10.96 -0.06 -13.64 16 16 C -0.31 -8.51 10.16 -14.94 -0.15 -8.67 16 17 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 18 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 19 N -0.88 -25.41 13.96 55.50 0.77 -24.63 16 20 Si 0.88 18.90 27.74 -169.99 -4.71 14.18 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 24 C 0.10 1.13 6.39 -3.07 -0.02 1.11 16 25 S 2.45 19.24 4.32 -107.50 -0.46 18.77 16 26 C -0.66 -1.43 10.17 101.05 1.03 -0.40 16 27 O -0.93 -10.94 18.10 -57.83 -1.05 -11.99 16 28 O -0.91 -11.04 17.40 -62.66 -1.09 -12.13 16 29 H 0.09 0.50 8.06 -51.93 -0.42 0.08 16 30 H 0.09 0.30 6.50 -51.93 -0.34 -0.03 16 31 H 0.08 0.02 6.56 -51.93 -0.34 -0.32 16 32 H 0.08 0.33 6.00 -51.93 -0.31 0.01 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.36 5.30 8.10 -39.29 -0.32 4.98 16 37 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.37 7.42 5.76 -40.82 -0.24 7.18 16 40 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 1.09 7.95 -51.93 -0.41 0.67 16 43 H 0.13 -0.02 8.14 -51.92 -0.42 -0.45 16 44 H 0.13 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.13 0.00 6.87 -51.92 -0.36 -0.35 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -41.26 381.14 -8.06 -49.32 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.47 Total: 8.16 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 0.43 Total: 5.45 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.48 Total: -54.50 kcal Atomic # 8 Polarization: -45.03 SS G_CDS: -2.10 Total: -47.13 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.71 Total: 14.18 kcal Atomic # 16 Polarization: 19.24 SS G_CDS: -0.46 Total: 18.77 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -41.26 -8.06 -49.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183656439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.028 kcal (2) G-P(sol) polarization free energy of solvation -41.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds