Wall clock time and date at job start Wed Apr 1 2020 07:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47219 * 2 1 4 4 C 1.50698 * 109.46920 * 119.99488 * 2 1 3 5 5 O 1.21287 * 119.99733 * 99.99771 * 4 2 1 6 6 N 1.34774 * 120.00615 * 280.00221 * 4 2 1 7 7 C 1.47422 * 125.64368 * 0.02562 * 6 4 2 8 8 C 1.54912 * 104.83500 * 155.83600 * 7 6 4 9 9 C 1.55162 * 101.57717 * 37.00946 * 8 7 6 10 10 H 1.09002 * 110.72059 * 82.86237 * 9 8 7 11 11 N 1.46904 * 110.71777 * 205.95855 * 9 8 7 12 12 C 1.46900 * 110.99872 * 271.15451 * 11 9 8 13 13 C 1.50700 * 109.47094 * 179.97438 * 12 11 9 14 14 O 1.21301 * 119.99887 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00226 * 179.97438 * 13 12 11 16 16 C 1.37095 * 120.00195 * 179.97438 * 15 13 12 17 17 H 1.08003 * 119.99958 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00102 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00162 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00188 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47292 * 89.99230 * 20 18 16 22 22 H 1.48497 * 109.47320 * 209.99953 * 20 18 16 23 23 H 1.48506 * 109.46565 * 329.99662 * 20 18 16 24 24 C 1.47018 * 125.65557 * 179.97438 * 6 4 2 25 25 S 1.81395 * 109.47009 * 239.99666 * 2 1 3 26 26 C 1.81395 * 101.92446 * 60.00454 * 25 2 1 27 27 O 1.42104 * 108.57698 * 174.48923 * 25 2 1 28 28 O 1.42096 * 108.58223 * 305.51184 * 25 2 1 29 29 H 1.08995 * 109.47568 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47156 * 300.00341 * 1 2 3 31 31 H 1.08997 * 109.46992 * 60.00050 * 1 2 3 32 32 H 1.09003 * 110.37241 * 36.99969 * 7 6 4 33 33 H 1.09001 * 110.37136 * 274.67499 * 7 6 4 34 34 H 1.08999 * 111.00244 * 278.93675 * 8 7 6 35 35 H 1.08996 * 111.00556 * 155.07846 * 8 7 6 36 36 H 1.00897 * 110.99650 * 147.20225 * 11 9 8 37 37 H 1.08993 * 109.47330 * 300.00361 * 12 11 9 38 38 H 1.09000 * 109.46965 * 60.00477 * 12 11 9 39 39 H 0.96998 * 119.99895 * 0.02562 * 15 13 12 40 40 H 0.96997 * 120.00440 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.88087 * 61.67301 * 24 6 4 42 42 H 1.09003 * 109.87911 * 300.51453 * 24 6 4 43 43 H 1.08998 * 109.47323 * 59.99263 * 26 25 2 44 44 H 1.08998 * 109.47580 * 179.97438 * 26 25 2 45 45 H 1.09007 * 109.46817 * 299.99738 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.4063 -1.8616 1.1559 6 7 2.0658 -0.0663 2.4140 7 6 1.6428 1.3267 2.6463 8 6 1.2829 1.3860 4.1519 9 6 2.3596 0.4531 4.7665 10 1 3.2944 0.9921 4.9206 11 7 1.8836 -0.1295 6.0282 12 6 2.2159 0.7373 7.1667 13 6 1.7125 0.1087 8.4405 14 8 1.1341 -0.9569 8.4035 15 7 1.9057 0.7300 9.6208 16 6 1.4472 0.1584 10.7795 17 1 0.9315 -0.7900 10.7465 18 6 1.6459 0.7991 11.9962 19 7 1.2069 0.2510 13.1069 20 14 2.5372 2.4398 12.0533 21 1 1.5527 3.5430 11.9156 22 1 3.2499 2.5712 13.3494 23 1 3.5175 2.5094 10.9400 24 6 2.5292 -0.6368 3.6872 25 16 2.1346 -0.8552 -1.4810 26 6 1.4230 0.1513 -2.8118 27 8 3.5496 -0.7331 -1.5283 28 8 1.5479 -2.1485 -1.5283 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7701 1.5647 2.0381 33 1 2.4596 2.0133 2.4243 34 1 0.2806 0.9961 4.3296 35 1 1.3796 2.4011 4.5370 36 1 2.2550 -1.0583 6.1604 37 1 3.2971 0.8618 7.2252 38 1 1.7449 1.7110 7.0317 39 1 2.3685 1.5819 9.6504 40 1 1.3460 0.6981 13.9564 41 1 3.5791 -0.9186 3.6068 42 1 1.9277 -1.5091 3.9433 43 1 1.7894 1.1745 -2.7291 44 1 1.7160 -0.2623 -3.7767 45 1 0.3361 0.1469 -2.7291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183656439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:08:12 Heat of formation + Delta-G solvation = -155.177725 kcal Electronic energy + Delta-G solvation = -28292.335752 eV Core-core repulsion = 24050.537723 eV Total energy + Delta-G solvation = -4241.798029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.44940 -40.32213 -39.00241 -38.07978 -37.04398 -36.29722 -35.71982 -34.57965 -33.74703 -31.66787 -30.38158 -29.99304 -27.92971 -26.20700 -25.26160 -24.19616 -21.65586 -21.35550 -21.00666 -20.25542 -19.63684 -18.73826 -18.12232 -17.82247 -17.30019 -17.06189 -16.97002 -16.85583 -16.52354 -16.11883 -15.96124 -15.56651 -15.09415 -14.81925 -14.58736 -14.37280 -14.31958 -14.23408 -13.98120 -13.90582 -13.78159 -13.64234 -13.24752 -13.17916 -13.15799 -13.08576 -12.91922 -12.86817 -12.54133 -12.41006 -12.16956 -11.99165 -11.97171 -11.82298 -11.53722 -11.50813 -11.22677 -10.45034 -10.25082 -9.88756 -9.41664 -8.40977 -6.02568 -1.09469 1.24280 1.30798 1.37049 1.46047 1.61227 1.76204 1.95960 2.24036 2.66181 2.77307 3.00385 3.15113 3.17280 3.36664 3.51065 3.62056 3.66695 3.92028 4.09496 4.11772 4.14013 4.26087 4.29044 4.34734 4.45072 4.52285 4.57636 4.60142 4.64472 4.70376 4.77493 4.93933 4.98437 5.13254 5.20227 5.28397 5.52955 5.89384 6.02652 6.19189 6.27384 6.59555 6.75144 6.88294 7.39714 7.97025 8.76757 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.034841 B = 0.001771 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.466352 B =15809.498980 C =16019.988048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.596 4.596 3 H 0.205 0.795 4 C 0.539 3.461 5 O -0.588 6.588 6 N -0.602 5.602 7 C 0.088 3.912 8 C -0.121 4.121 9 C 0.079 3.921 10 H 0.088 0.912 11 N -0.678 5.678 12 C 0.065 3.935 13 C 0.446 3.554 14 O -0.618 6.618 15 N -0.589 5.589 16 C -0.330 4.330 17 H 0.052 0.948 18 C -0.018 4.018 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.255 1.255 22 H -0.278 1.278 23 H -0.228 1.228 24 C 0.100 3.900 25 S 2.418 3.582 26 C -0.622 4.622 27 O -0.986 6.986 28 O -0.976 6.976 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.344 0.656 37 H 0.081 0.919 38 H 0.124 0.876 39 H 0.391 0.609 40 H 0.279 0.721 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.170 0.830 44 H 0.144 0.856 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 16.523 -34.179 37.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.706 4.706 3 H 0.222 0.778 4 C 0.327 3.673 5 O -0.469 6.469 6 N -0.334 5.334 7 C -0.032 4.032 8 C -0.159 4.159 9 C -0.031 4.031 10 H 0.106 0.894 11 N -0.311 5.311 12 C -0.067 4.067 13 C 0.234 3.766 14 O -0.503 6.503 15 N -0.231 5.231 16 C -0.460 4.460 17 H 0.070 0.930 18 C -0.216 4.216 19 N -0.576 5.576 20 Si 0.788 3.212 21 H -0.179 1.179 22 H -0.203 1.203 23 H -0.152 1.152 24 C -0.023 4.023 25 S 2.603 3.397 26 C -0.776 4.776 27 O -0.983 6.983 28 O -0.973 6.973 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.152 0.848 32 H 0.132 0.868 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.163 0.837 37 H 0.099 0.901 38 H 0.142 0.858 39 H 0.227 0.773 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.188 0.812 44 H 0.163 0.837 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.106 14.652 -34.157 37.183 hybrid contribution 0.901 0.196 1.381 1.661 sum 2.007 14.849 -32.776 36.038 Atomic orbital electron populations 1.21875 0.85396 1.04891 1.08201 1.30609 1.10530 1.16781 1.12640 0.77796 1.19712 0.77709 0.85473 0.84386 1.90869 1.50838 1.19256 1.85918 1.48315 1.62630 1.15708 1.06715 1.22932 1.02527 0.80416 0.97362 1.22925 0.98894 1.00994 0.93085 1.22643 0.98643 0.94481 0.87312 0.89405 1.60179 1.64580 1.05630 1.00672 1.21684 1.00427 0.97792 0.86772 1.21062 0.83371 0.86416 0.85761 1.90566 1.46923 1.25444 1.87319 1.42001 1.53352 1.22020 1.05707 1.18994 1.35913 1.06184 0.84873 0.92977 1.26182 0.98204 1.03617 0.93612 1.69813 1.47044 1.41585 0.99172 0.85321 0.79287 0.76896 0.79703 1.17894 1.20291 1.15156 1.22059 0.99647 0.97260 0.83365 1.07847 0.75247 0.77287 0.79316 1.30102 1.15812 1.16453 1.15280 1.93526 1.30507 1.87708 1.86603 1.93530 1.79453 1.38200 1.86152 0.92130 0.88452 0.84842 0.86831 0.87679 0.90927 0.86854 0.83709 0.90127 0.85847 0.77312 0.91158 0.91369 0.92589 0.81212 0.83745 0.81594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 8.82 71.98 0.63 -0.04 16 2 C -0.60 -5.90 2.39 29.85 0.07 -5.83 16 3 H 0.20 -0.24 7.68 -2.39 -0.02 -0.25 16 4 C 0.54 12.17 7.02 87.66 0.62 12.79 16 5 O -0.59 -20.38 15.97 5.47 0.09 -20.30 16 6 N -0.60 -10.99 3.33 -811.80 -2.70 -13.69 16 7 C 0.09 0.70 6.39 86.86 0.56 1.26 16 8 C -0.12 -1.45 6.75 31.99 0.22 -1.23 16 9 C 0.08 1.40 3.25 46.10 0.15 1.55 16 10 H 0.09 1.18 7.86 -2.39 -0.02 1.16 16 11 N -0.68 -18.22 5.95 -489.45 -2.91 -21.13 16 12 C 0.07 1.76 6.04 85.56 0.52 2.28 16 13 C 0.45 19.39 7.82 87.66 0.69 20.08 16 14 O -0.62 -34.04 15.78 -3.09 -0.05 -34.09 16 15 N -0.59 -26.86 5.09 -306.98 -1.56 -28.42 16 16 C -0.33 -19.17 10.16 84.04 0.85 -18.32 16 17 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 18 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 19 N -0.94 -56.18 13.96 21.66 0.30 -55.88 16 20 Si 0.97 37.61 27.74 68.60 1.90 39.51 16 21 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 22 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.23 -7.28 6.52 99.48 0.65 -6.63 16 24 C 0.10 2.22 6.39 86.73 0.55 2.77 16 25 S 2.42 36.78 4.32 -56.49 -0.24 36.54 16 26 C -0.62 0.39 10.17 113.37 1.15 1.55 16 27 O -0.99 -24.21 18.10 -127.37 -2.31 -26.51 16 28 O -0.98 -25.72 17.40 -122.75 -2.14 -27.86 16 29 H 0.06 0.65 8.06 -2.39 -0.02 0.63 16 30 H 0.10 0.27 6.50 -2.39 -0.02 0.26 16 31 H 0.13 -0.77 6.56 -2.39 -0.02 -0.78 16 32 H 0.11 0.23 6.00 -2.39 -0.01 0.22 16 33 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.34 10.60 8.10 -89.70 -0.73 9.88 16 37 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 38 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.39 14.38 5.76 -92.71 -0.53 13.85 16 40 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 1.56 7.95 -2.39 -0.02 1.54 16 43 H 0.17 -1.28 8.14 -2.39 -0.02 -1.30 16 44 H 0.14 -0.13 8.14 -2.39 -0.02 -0.15 16 45 H 0.17 -1.08 6.87 -2.39 -0.02 -1.09 16 Total: -1.00 -107.29 381.14 -3.42 -110.71 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: -0.28 Total: 24.77 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 6.47 Total: 16.35 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -6.87 Total: -119.13 kcal Atomic # 8 Polarization: -104.35 SS G_CDS: -4.40 Total: -108.75 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 1.90 Total: 39.51 kcal Atomic # 16 Polarization: 36.78 SS G_CDS: -0.24 Total: 36.54 kcal Total: -107.29 -3.42 -110.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183656439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.468 kcal (2) G-P(sol) polarization free energy of solvation -107.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -110.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds