Wall clock time and date at job start Wed Apr 1 2020 06:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.64099 * 2 1 4 4 C 1.54936 * 110.72297 * 236.65433 * 2 1 3 5 5 N 1.48525 * 103.22975 * 204.22495 * 4 2 1 6 6 C 1.46902 * 111.00279 * 159.72034 * 5 4 2 7 7 C 1.50696 * 109.46942 * 190.00420 * 6 5 4 8 8 O 1.21290 * 120.00432 * 359.97438 * 7 6 5 9 9 N 1.34786 * 119.99836 * 180.02562 * 7 6 5 10 10 C 1.37088 * 119.99982 * 179.97438 * 9 7 6 11 11 H 1.08005 * 120.00201 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00048 * 179.97438 * 10 9 7 13 13 N 1.31410 * 119.99840 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00486 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46876 * 89.99640 * 14 12 10 16 16 H 1.48496 * 109.47239 * 210.00481 * 14 12 10 17 17 H 1.48499 * 109.46675 * 330.00337 * 14 12 10 18 18 C 1.47907 * 105.81834 * 39.20777 * 5 4 2 19 19 C 1.54000 * 107.05804 * 334.66950 * 18 5 4 20 20 H 1.09004 * 110.39059 * 120.18289 * 19 18 5 21 21 N 1.46499 * 110.31011 * 242.30946 * 19 18 5 22 22 C 1.34777 * 119.99665 * 270.99416 * 21 19 18 23 23 O 1.21283 * 119.99990 * 359.71991 * 22 21 19 24 24 C 1.50698 * 119.99538 * 179.72653 * 22 21 19 25 25 S 1.81404 * 109.47096 * 179.97438 * 24 22 21 26 26 C 1.81393 * 101.92445 * 179.97438 * 25 24 22 27 27 O 1.42099 * 108.57640 * 294.48827 * 25 24 22 28 28 O 1.42101 * 108.57907 * 65.51004 * 25 24 22 29 29 H 1.08998 * 109.46884 * 296.84247 * 1 2 3 30 30 H 1.08998 * 109.47574 * 56.84853 * 1 2 3 31 31 H 1.09004 * 109.46940 * 176.85109 * 1 2 3 32 32 H 1.09001 * 110.66459 * 322.66428 * 4 2 1 33 33 H 1.09003 * 110.66743 * 85.62291 * 4 2 1 34 34 H 1.08997 * 109.47130 * 310.00338 * 6 5 4 35 35 H 1.08996 * 109.46889 * 70.00296 * 6 5 4 36 36 H 0.97004 * 119.99482 * 359.97438 * 9 7 6 37 37 H 0.97001 * 119.99958 * 179.97438 * 13 12 10 38 38 H 1.08996 * 109.91606 * 215.31675 * 18 5 4 39 39 H 1.08995 * 109.91638 * 94.02045 * 18 5 4 40 40 H 0.97001 * 119.99790 * 90.71129 * 21 19 18 41 41 H 1.09003 * 109.47112 * 299.99065 * 24 22 21 42 42 H 1.08993 * 109.47916 * 59.99687 * 24 22 21 43 43 H 1.09005 * 109.47285 * 59.99900 * 26 25 24 44 44 H 1.08996 * 109.47298 * 180.02562 * 26 25 24 45 45 H 1.08999 * 109.47306 * 300.00229 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0783 -0.7966 -1.2105 5 7 3.4318 -1.2104 -0.7603 6 6 3.9212 -2.3524 -1.5442 7 6 5.1737 -2.8981 -0.9085 8 8 5.6156 -2.3860 0.0983 9 7 5.8036 -3.9548 -1.4593 10 6 6.9433 -4.4510 -0.8813 11 1 7.3364 -3.9955 0.0157 12 6 7.5924 -5.5407 -1.4488 13 7 7.1140 -6.0953 -2.5398 14 14 9.1451 -6.2174 -0.6609 15 1 8.7825 -7.2640 0.3282 16 1 10.0156 -6.8073 -1.7093 17 1 9.8713 -5.1186 0.0250 18 6 3.2894 -1.5698 0.6674 19 6 2.0771 -0.7907 1.2106 20 1 1.3202 -1.4795 1.5859 21 7 2.4971 0.1289 2.2708 22 6 2.5294 -0.2891 3.5517 23 8 2.2058 -1.4251 3.8272 24 6 2.9674 0.6551 4.6415 25 16 2.9028 -0.1969 6.2417 26 6 3.4596 1.1009 7.3801 27 8 1.5473 -0.5064 6.5353 28 8 3.8676 -1.2402 6.2385 29 1 -0.3633 0.4640 0.9169 30 1 -0.3634 0.5620 -0.8603 31 1 -0.3633 -1.0262 -0.0565 32 1 1.4560 -1.6688 -1.4108 33 1 2.1416 -0.1600 -2.0931 34 1 3.1578 -3.1299 -1.5690 35 1 4.1417 -2.0272 -2.5609 36 1 5.4504 -4.3642 -2.2647 37 1 7.5673 -6.8557 -2.9362 38 1 4.1887 -1.2850 1.2134 39 1 3.1161 -2.6414 0.7651 40 1 2.7559 1.0374 2.0503 41 1 3.9875 0.9864 4.4469 42 1 2.3028 1.5186 4.6630 43 1 2.7810 1.9519 7.3209 44 1 3.4676 0.7122 8.3983 45 1 4.4654 1.4185 7.1050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206363944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:31:01 Heat of formation + Delta-G solvation = -123.646200 kcal Electronic energy + Delta-G solvation = -28942.659878 eV Core-core repulsion = 24702.229158 eV Total energy + Delta-G solvation = -4240.430719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -40.36226 -39.00827 -37.64042 -37.14922 -36.14813 -34.62630 -33.88281 -32.71328 -31.24852 -31.09405 -29.80851 -28.55612 -27.22952 -25.28088 -23.91238 -21.75870 -20.75706 -20.45777 -19.10395 -19.01217 -17.80407 -17.71320 -17.27016 -16.57997 -16.31158 -16.02181 -15.88402 -15.36087 -15.04019 -14.86664 -14.56447 -14.13683 -13.90074 -13.77516 -13.62610 -13.58579 -13.29689 -13.11609 -13.05764 -12.58175 -12.25629 -12.19787 -12.13016 -12.06628 -11.84591 -11.53275 -11.43781 -11.39349 -11.30744 -11.07884 -11.05704 -10.83304 -10.79478 -10.36030 -10.30352 -10.19414 -9.48598 -9.19703 -8.40754 -8.00413 -7.92056 -6.39759 -3.80326 -0.39431 2.28342 2.44953 2.76299 3.20724 3.29206 3.35217 3.57692 3.71004 3.90929 4.05663 4.20075 4.28899 4.29878 4.39522 4.40201 4.64916 4.71737 4.78184 4.88803 5.03950 5.22907 5.26394 5.27032 5.35626 5.42547 5.52155 5.65397 5.74916 5.77422 5.86614 5.91789 6.00546 6.10050 6.28167 6.32456 6.66534 7.09601 7.21498 7.25246 7.57721 7.89254 8.07778 8.62992 9.19933 9.55417 10.06805 10.77982 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009712 B = 0.002929 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.232816 B = 9557.273390 C =12001.164252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.088 0.912 4 C 0.036 3.964 5 N -0.495 5.495 6 C 0.035 3.965 7 C 0.440 3.560 8 O -0.580 6.580 9 N -0.562 5.562 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.040 3.960 19 C 0.129 3.871 20 H 0.098 0.902 21 N -0.703 5.703 22 C 0.541 3.459 23 O -0.525 6.525 24 C -0.661 4.661 25 S 2.455 3.545 26 C -0.664 4.664 27 O -0.924 6.924 28 O -0.915 6.915 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.108 0.892 39 H 0.050 0.950 40 H 0.404 0.596 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.030 19.382 9.755 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.107 0.893 4 C -0.092 4.092 5 N -0.219 5.219 6 C -0.096 4.096 7 C 0.226 3.774 8 O -0.465 6.465 9 N -0.198 5.198 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.089 4.089 19 C 0.024 3.976 20 H 0.116 0.884 21 N -0.354 5.354 22 C 0.324 3.676 23 O -0.402 6.402 24 C -0.788 4.788 25 S 2.631 3.369 26 C -0.813 4.813 27 O -0.921 6.921 28 O -0.912 6.912 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.068 0.932 40 H 0.239 0.761 41 H 0.180 0.820 42 H 0.176 0.824 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.741 18.292 10.598 24.682 hybrid contribution 0.515 0.083 -0.527 0.741 sum -12.226 18.375 10.071 24.259 Atomic orbital electron populations 1.21794 0.93987 1.02377 1.01952 1.22332 0.95733 0.99928 0.93864 0.89328 1.23357 0.89773 0.98623 0.97458 1.64632 1.21215 1.33526 1.02564 1.22119 0.96819 0.92196 0.98503 1.19719 0.86976 0.83534 0.87221 1.90498 1.68121 1.61198 1.26668 1.41845 1.24345 1.27308 1.26306 1.19703 1.01195 1.11763 1.10109 0.87893 1.25263 0.99738 0.96761 0.96160 1.69612 1.40926 1.23791 1.20012 0.85853 0.80832 0.79135 0.78457 1.20353 1.20943 1.19389 1.23332 0.98109 0.98104 0.89345 1.22230 0.97243 0.91618 0.86511 0.88393 1.45847 1.67717 1.16126 1.05736 1.19097 0.77876 0.87071 0.83510 1.90893 1.48034 1.18904 1.82341 1.30894 1.12704 1.14120 1.21073 1.07208 0.75937 0.76827 0.76925 1.30408 1.13078 1.19925 1.17851 1.93591 1.34443 1.81563 1.82479 1.93638 1.62897 1.49629 1.85021 0.92393 0.92066 0.92260 0.93412 0.89693 0.93182 0.89030 0.77472 0.91875 0.87403 0.93204 0.76121 0.82043 0.82444 0.85375 0.84921 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.16 37.16 0.34 -0.82 16 2 C -0.10 -0.99 3.37 -88.76 -0.30 -1.29 16 3 H 0.09 0.77 7.75 -51.93 -0.40 0.37 16 4 C 0.04 0.43 6.00 -1.90 -0.01 0.42 16 5 N -0.50 -8.10 5.26 -231.90 -1.22 -9.32 16 6 C 0.04 0.64 5.48 -4.98 -0.03 0.61 16 7 C 0.44 10.54 7.35 -10.98 -0.08 10.46 16 8 O -0.58 -15.72 13.37 5.55 0.07 -15.64 16 9 N -0.56 -14.49 5.29 -10.96 -0.06 -14.55 16 10 C -0.30 -8.47 9.68 -14.94 -0.14 -8.62 16 11 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.93 13.05 55.50 0.72 -24.20 16 14 Si 0.93 21.55 29.55 -169.99 -5.02 16.52 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 C 0.04 0.70 4.86 -2.75 -0.01 0.68 16 19 C 0.13 1.69 2.92 -66.57 -0.19 1.50 16 20 H 0.10 1.39 7.27 -51.93 -0.38 1.02 16 21 N -0.70 -7.81 5.01 -52.49 -0.26 -8.08 16 22 C 0.54 6.95 7.85 -10.99 -0.09 6.86 16 23 O -0.53 -9.40 15.28 2.56 0.04 -9.36 16 24 C -0.66 -4.56 6.29 36.00 0.23 -4.33 16 25 S 2.46 22.89 4.60 -107.50 -0.49 22.40 16 26 C -0.66 -2.49 10.62 101.05 1.07 -1.42 16 27 O -0.92 -12.20 17.95 -59.52 -1.07 -13.27 16 28 O -0.91 -13.51 17.94 -59.53 -1.07 -14.58 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.05 0.55 7.73 -51.93 -0.40 0.15 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.84 7.89 -51.93 -0.41 0.43 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 37 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.11 2.24 6.53 -51.93 -0.34 1.90 16 39 H 0.05 0.99 7.59 -51.93 -0.39 0.60 16 40 H 0.40 3.06 8.38 -40.82 -0.34 2.72 16 41 H 0.16 0.62 8.14 -51.92 -0.42 0.20 16 42 H 0.16 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.13 0.16 8.14 -51.92 -0.42 -0.27 16 44 H 0.13 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 LS Contribution 385.59 15.07 5.81 5.81 Total: -1.00 -41.59 385.59 -8.59 -50.18 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -6.72 Total: 9.52 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 0.69 Total: 4.57 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.82 Total: -56.15 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -2.02 Total: -52.85 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 22.89 SS G_CDS: -0.49 Total: 22.40 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -41.59 -8.59 -50.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206363944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.471 kcal (2) G-P(sol) polarization free energy of solvation -41.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds