Wall clock time and date at job start Wed Apr 1 2020 06:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.64099 * 2 1 4 4 C 1.54936 * 110.72297 * 236.65433 * 2 1 3 5 5 N 1.48525 * 103.22975 * 204.22495 * 4 2 1 6 6 C 1.46902 * 111.00279 * 159.72034 * 5 4 2 7 7 C 1.50696 * 109.46942 * 190.00420 * 6 5 4 8 8 O 1.21290 * 120.00432 * 359.97438 * 7 6 5 9 9 N 1.34786 * 119.99836 * 180.02562 * 7 6 5 10 10 C 1.37088 * 119.99982 * 179.97438 * 9 7 6 11 11 H 1.08005 * 120.00201 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00048 * 179.97438 * 10 9 7 13 13 N 1.31410 * 119.99840 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00486 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46876 * 89.99640 * 14 12 10 16 16 H 1.48496 * 109.47239 * 210.00481 * 14 12 10 17 17 H 1.48499 * 109.46675 * 330.00337 * 14 12 10 18 18 C 1.47907 * 105.81834 * 39.20777 * 5 4 2 19 19 C 1.54000 * 107.05804 * 334.66950 * 18 5 4 20 20 H 1.09004 * 110.39059 * 120.18289 * 19 18 5 21 21 N 1.46499 * 110.31011 * 242.30946 * 19 18 5 22 22 C 1.34777 * 119.99665 * 270.99416 * 21 19 18 23 23 O 1.21283 * 119.99990 * 359.71991 * 22 21 19 24 24 C 1.50698 * 119.99538 * 179.72653 * 22 21 19 25 25 S 1.81404 * 109.47096 * 179.97438 * 24 22 21 26 26 C 1.81393 * 101.92445 * 179.97438 * 25 24 22 27 27 O 1.42099 * 108.57640 * 294.48827 * 25 24 22 28 28 O 1.42101 * 108.57907 * 65.51004 * 25 24 22 29 29 H 1.08998 * 109.46884 * 296.84247 * 1 2 3 30 30 H 1.08998 * 109.47574 * 56.84853 * 1 2 3 31 31 H 1.09004 * 109.46940 * 176.85109 * 1 2 3 32 32 H 1.09001 * 110.66459 * 322.66428 * 4 2 1 33 33 H 1.09003 * 110.66743 * 85.62291 * 4 2 1 34 34 H 1.08997 * 109.47130 * 310.00338 * 6 5 4 35 35 H 1.08996 * 109.46889 * 70.00296 * 6 5 4 36 36 H 0.97004 * 119.99482 * 359.97438 * 9 7 6 37 37 H 0.97001 * 119.99958 * 179.97438 * 13 12 10 38 38 H 1.08996 * 109.91606 * 215.31675 * 18 5 4 39 39 H 1.08995 * 109.91638 * 94.02045 * 18 5 4 40 40 H 0.97001 * 119.99790 * 90.71129 * 21 19 18 41 41 H 1.09003 * 109.47112 * 299.99065 * 24 22 21 42 42 H 1.08993 * 109.47916 * 59.99687 * 24 22 21 43 43 H 1.09005 * 109.47285 * 59.99900 * 26 25 24 44 44 H 1.08996 * 109.47298 * 180.02562 * 26 25 24 45 45 H 1.08999 * 109.47306 * 300.00229 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0783 -0.7966 -1.2105 5 7 3.4318 -1.2104 -0.7603 6 6 3.9212 -2.3524 -1.5442 7 6 5.1737 -2.8981 -0.9085 8 8 5.6156 -2.3860 0.0983 9 7 5.8036 -3.9548 -1.4593 10 6 6.9433 -4.4510 -0.8813 11 1 7.3364 -3.9955 0.0157 12 6 7.5924 -5.5407 -1.4488 13 7 7.1140 -6.0953 -2.5398 14 14 9.1451 -6.2174 -0.6609 15 1 8.7825 -7.2640 0.3282 16 1 10.0156 -6.8073 -1.7093 17 1 9.8713 -5.1186 0.0250 18 6 3.2894 -1.5698 0.6674 19 6 2.0771 -0.7907 1.2106 20 1 1.3202 -1.4795 1.5859 21 7 2.4971 0.1289 2.2708 22 6 2.5294 -0.2891 3.5517 23 8 2.2058 -1.4251 3.8272 24 6 2.9674 0.6551 4.6415 25 16 2.9028 -0.1969 6.2417 26 6 3.4596 1.1009 7.3801 27 8 1.5473 -0.5064 6.5353 28 8 3.8676 -1.2402 6.2385 29 1 -0.3633 0.4640 0.9169 30 1 -0.3634 0.5620 -0.8603 31 1 -0.3633 -1.0262 -0.0565 32 1 1.4560 -1.6688 -1.4108 33 1 2.1416 -0.1600 -2.0931 34 1 3.1578 -3.1299 -1.5690 35 1 4.1417 -2.0272 -2.5609 36 1 5.4504 -4.3642 -2.2647 37 1 7.5673 -6.8557 -2.9362 38 1 4.1887 -1.2850 1.2134 39 1 3.1161 -2.6414 0.7651 40 1 2.7559 1.0374 2.0503 41 1 3.9875 0.9864 4.4469 42 1 2.3028 1.5186 4.6630 43 1 2.7810 1.9519 7.3209 44 1 3.4676 0.7122 8.3983 45 1 4.4654 1.4185 7.1050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206363944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:31:00 Heat of formation + Delta-G solvation = -163.089832 kcal Electronic energy + Delta-G solvation = -28944.370282 eV Core-core repulsion = 24702.229158 eV Total energy + Delta-G solvation = -4242.141124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.47917 -40.46667 -39.20730 -37.99598 -36.98850 -36.15549 -35.57325 -33.79561 -33.30614 -31.83543 -30.31796 -29.76190 -28.46931 -26.84319 -25.35160 -22.97108 -21.87667 -21.45804 -20.91343 -19.87233 -19.77507 -18.61137 -18.20760 -17.69396 -17.35234 -17.14419 -16.82994 -16.66619 -16.53323 -16.14837 -16.06193 -15.54649 -15.45349 -15.03180 -14.58529 -14.25225 -14.07954 -13.96301 -13.88404 -13.70013 -13.56228 -13.38911 -13.23275 -13.07523 -13.06352 -13.00725 -12.96923 -12.68637 -12.46036 -12.36158 -12.15496 -12.10759 -11.86938 -11.74183 -11.64165 -11.52212 -11.34268 -10.37611 -10.19134 -10.03962 -9.40878 -8.50472 -5.99149 -1.03181 1.32471 1.34579 1.38258 1.51175 1.83486 1.92326 2.00427 2.25859 2.80374 2.92076 3.11038 3.15755 3.21554 3.49375 3.55097 3.63363 3.96747 3.99285 4.13358 4.16161 4.28738 4.30568 4.32352 4.33900 4.43953 4.49164 4.57134 4.67714 4.80510 4.82883 4.96154 4.99525 5.09197 5.17171 5.33375 5.37290 5.44818 5.75867 5.88807 6.04647 6.28594 6.56201 7.01903 7.08864 7.50988 8.07088 8.67101 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009712 B = 0.002929 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.232816 B = 9557.273390 C =12001.164252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 H 0.113 0.887 4 C 0.034 3.966 5 N -0.503 5.503 6 C 0.046 3.954 7 C 0.435 3.565 8 O -0.617 6.617 9 N -0.572 5.572 10 C -0.334 4.334 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.992 3.008 15 H -0.274 1.274 16 H -0.266 1.266 17 H -0.272 1.272 18 C 0.046 3.954 19 C 0.133 3.867 20 H 0.080 0.920 21 N -0.690 5.690 22 C 0.521 3.479 23 O -0.589 6.589 24 C -0.642 4.642 25 S 2.428 3.572 26 C -0.622 4.622 27 O -0.982 6.982 28 O -0.993 6.993 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.396 0.604 37 H 0.278 0.722 38 H 0.068 0.932 39 H 0.008 0.992 40 H 0.424 0.576 41 H 0.199 0.801 42 H 0.216 0.784 43 H 0.169 0.831 44 H 0.140 0.860 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.552 23.154 9.231 28.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 H 0.131 0.869 4 C -0.093 4.093 5 N -0.228 5.228 6 C -0.085 4.085 7 C 0.222 3.778 8 O -0.503 6.503 9 N -0.210 5.210 10 C -0.464 4.464 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.816 3.184 15 H -0.199 1.199 16 H -0.190 1.190 17 H -0.197 1.197 18 C -0.083 4.083 19 C 0.027 3.973 20 H 0.098 0.902 21 N -0.342 5.342 22 C 0.308 3.692 23 O -0.470 6.470 24 C -0.771 4.771 25 S 2.614 3.386 26 C -0.776 4.776 27 O -0.979 6.979 28 O -0.990 6.990 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.230 0.770 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.026 0.974 40 H 0.263 0.737 41 H 0.217 0.783 42 H 0.233 0.767 43 H 0.187 0.813 44 H 0.158 0.842 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.297 22.058 10.024 27.638 hybrid contribution 0.676 -0.969 -0.349 1.232 sum -12.621 21.089 9.675 26.413 Atomic orbital electron populations 1.21770 0.92046 1.02381 1.03395 1.22337 0.97087 1.00087 0.90678 0.86901 1.23570 0.87155 0.99487 0.99126 1.64617 1.24436 1.32197 1.01514 1.22031 0.94010 0.93293 0.99190 1.20829 0.88062 0.82399 0.86501 1.90483 1.69525 1.62030 1.28273 1.41914 1.24262 1.28141 1.26654 1.19632 1.03085 1.13280 1.10354 0.90588 1.26037 1.02340 0.96310 0.96506 1.69666 1.41921 1.23977 1.20480 0.84945 0.77287 0.78243 0.77971 1.19943 1.19050 1.19714 1.23080 0.98390 0.96339 0.90524 1.22039 0.94773 0.92241 0.88247 0.90180 1.45736 1.66875 1.16635 1.04957 1.20159 0.76807 0.87242 0.85028 1.90875 1.50700 1.22026 1.83416 1.30772 1.16137 1.13779 1.16409 1.07356 0.74190 0.78425 0.78653 1.30068 1.15338 1.17256 1.14986 1.93516 1.36837 1.83919 1.83595 1.93551 1.63898 1.55064 1.86498 0.91736 0.89664 0.93190 0.92876 0.86921 0.91710 0.86267 0.76976 0.91207 0.91402 0.97370 0.73695 0.78332 0.76734 0.81321 0.84201 0.82169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.16 71.98 0.66 -1.16 16 2 C -0.08 -1.44 3.37 -9.59 -0.03 -1.47 16 3 H 0.11 1.47 7.75 -2.39 -0.02 1.45 16 4 C 0.03 0.72 6.00 86.65 0.52 1.24 16 5 N -0.50 -16.27 5.26 -887.59 -4.67 -20.94 16 6 C 0.05 1.66 5.48 85.56 0.47 2.13 16 7 C 0.43 21.71 7.35 87.65 0.64 22.36 16 8 O -0.62 -35.41 13.37 -3.06 -0.04 -35.45 16 9 N -0.57 -30.73 5.29 -306.98 -1.62 -32.35 16 10 C -0.33 -19.79 9.68 84.04 0.81 -18.98 16 11 H 0.08 4.83 7.16 -2.91 -0.02 4.80 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 13 N -0.92 -51.09 13.05 21.66 0.28 -50.81 16 14 Si 0.99 44.71 29.55 68.60 2.03 46.74 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 C 0.05 1.71 4.86 86.45 0.42 2.13 16 19 C 0.13 3.54 2.92 45.87 0.13 3.67 16 20 H 0.08 2.43 7.27 -2.39 -0.02 2.41 16 21 N -0.69 -14.82 5.01 -438.36 -2.20 -17.02 16 22 C 0.52 13.60 7.85 87.66 0.69 14.29 16 23 O -0.59 -22.98 15.28 -0.18 0.00 -22.98 16 24 C -0.64 -7.41 6.29 71.24 0.45 -6.96 16 25 S 2.43 45.66 4.60 -56.49 -0.26 45.40 16 26 C -0.62 -2.15 10.62 113.37 1.20 -0.95 16 27 O -0.98 -27.50 17.95 -125.76 -2.26 -29.76 16 28 O -0.99 -32.09 17.94 -125.75 -2.26 -34.35 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 32 H 0.05 1.10 7.73 -2.39 -0.02 1.08 16 33 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 2.16 7.89 -2.39 -0.02 2.14 16 35 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 36 H 0.40 20.11 7.90 -92.71 -0.73 19.38 16 37 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 38 H 0.07 3.04 6.53 -2.39 -0.02 3.02 16 39 H 0.01 0.35 7.59 -2.39 -0.02 0.33 16 40 H 0.42 5.28 8.38 -92.71 -0.78 4.50 16 41 H 0.20 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.22 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.17 -0.64 8.14 -2.39 -0.02 -0.66 16 44 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.16 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: -1.00 -103.13 385.59 -5.04 -108.18 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.48 Total: 27.26 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 6.44 Total: 16.09 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -8.21 Total: -121.12 kcal Atomic # 8 Polarization: -117.99 SS G_CDS: -4.56 Total: -122.55 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 45.66 SS G_CDS: -0.26 Total: 45.40 kcal Total: -103.13 -5.04 -108.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206363944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.914 kcal (2) G-P(sol) polarization free energy of solvation -103.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds