Wall clock time and date at job start Wed Apr 1 2020 07:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47112 * 2 1 4 4 N 1.46496 * 109.47283 * 120.00026 * 2 1 3 5 5 S 1.65604 * 120.00284 * 265.00179 * 4 2 1 6 6 C 1.81400 * 104.44830 * 64.99899 * 5 4 2 7 7 O 1.42100 * 104.27945 * 181.06872 * 5 4 2 8 8 O 1.42101 * 104.27643 * 308.93044 * 5 4 2 9 9 C 1.50697 * 109.47544 * 240.00399 * 2 1 3 10 10 O 1.21283 * 119.99984 * 264.94540 * 9 2 1 11 11 N 1.34767 * 120.00337 * 84.93604 * 9 2 1 12 12 C 1.48139 * 120.84296 * 353.64415 * 11 9 2 13 13 C 1.53536 * 107.12929 * 130.36216 * 12 11 9 14 14 O 1.42657 * 108.38323 * 56.12763 * 13 12 11 15 15 C 1.42774 * 115.68876 * 295.54631 * 14 13 12 16 16 H 1.09001 * 112.73356 * 290.33867 * 15 14 13 17 17 C 1.55393 * 107.09214 * 166.04837 * 15 14 13 18 18 N 1.47480 * 104.78371 * 281.69108 * 17 15 14 19 19 C 1.36942 * 125.68434 * 155.56590 * 18 17 15 20 20 H 1.08003 * 119.99671 * 180.02562 * 19 18 17 21 21 C 1.38807 * 120.00208 * 0.02562 * 19 18 17 22 22 N 1.31617 * 119.99962 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99806 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47325 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47168 * 120.00528 * 23 21 19 26 26 H 1.48507 * 109.46776 * 240.00012 * 23 21 19 27 27 C 1.47212 * 108.62334 * 335.59528 * 18 17 15 28 28 C 1.45666 * 120.12363 * 174.82521 * 11 9 2 29 29 H 1.09005 * 109.95187 * 345.45513 * 28 11 9 30 30 H 1.08998 * 109.47423 * 305.02196 * 1 2 3 31 31 H 1.09000 * 109.46843 * 65.02474 * 1 2 3 32 32 H 1.08999 * 109.46932 * 185.01655 * 1 2 3 33 33 H 0.97004 * 120.00199 * 84.99807 * 4 2 1 34 34 H 1.08995 * 109.47467 * 59.99891 * 6 5 4 35 35 H 1.08994 * 109.47543 * 180.02562 * 6 5 4 36 36 H 1.09006 * 109.47015 * 300.00044 * 6 5 4 37 37 H 1.09008 * 109.55021 * 11.21647 * 12 11 9 38 38 H 1.09007 * 110.43825 * 250.00657 * 12 11 9 39 39 H 1.09004 * 109.68214 * 296.40531 * 13 12 11 40 40 H 1.09000 * 109.68568 * 175.84967 * 13 12 11 41 41 H 1.09000 * 110.37637 * 40.51942 * 17 15 14 42 42 H 1.08996 * 110.37508 * 162.74762 * 17 15 14 43 43 H 0.97005 * 120.00186 * 179.97438 * 22 21 19 44 44 H 1.08995 * 109.96163 * 241.89729 * 27 18 17 45 45 H 1.09001 * 109.95581 * 120.65621 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 16 2.4122 0.1771 2.5505 6 6 0.8408 0.8988 3.0985 7 8 2.8606 -0.8029 3.4766 8 8 3.2874 1.1907 2.0751 9 6 2.0324 -0.7103 -1.2305 10 8 2.3218 -1.8868 -1.1758 11 7 2.1600 -0.0383 -2.3916 12 6 1.6821 1.3583 -2.5174 13 6 2.8266 2.1739 -3.1355 14 8 3.1966 1.5650 -4.3714 15 6 3.7424 0.2493 -4.2741 16 1 4.7326 0.2366 -3.8186 17 6 3.7380 -0.3540 -5.7061 18 7 2.3418 -0.7704 -5.9348 19 6 1.7405 -0.9122 -7.1570 20 1 0.7081 -1.2233 -7.2179 21 6 2.4579 -0.6561 -8.3174 22 7 3.7163 -0.2775 -8.2430 23 14 1.6373 -0.8488 -9.9844 24 1 0.2295 -1.2822 -9.7961 25 1 1.6640 0.4507 -10.7025 26 1 2.3665 -1.8690 -10.7800 27 6 1.7023 -1.0075 -4.6303 28 6 2.7504 -0.6904 -3.5527 29 1 3.2589 -1.6049 -3.2471 30 1 -0.3634 0.5897 0.8416 31 1 -0.3633 0.4339 -0.9316 32 1 -0.3633 -1.0237 0.0899 33 1 2.1110 -1.6562 1.1949 34 1 0.1315 0.1009 3.3185 35 1 1.0078 1.4944 3.9959 36 1 0.4387 1.5352 2.3102 37 1 1.4384 1.7507 -1.5300 38 1 0.8043 1.4036 -3.1621 39 1 3.6809 2.1793 -2.4586 40 1 2.4936 3.1962 -3.3152 41 1 4.0339 0.3993 -6.4362 42 1 4.4057 -1.2140 -5.7576 43 1 4.2177 -0.0989 -9.0540 44 1 1.3916 -2.0493 -4.5520 45 1 0.8393 -0.3518 -4.5144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218697179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:09:28 Heat of formation + Delta-G solvation = -93.947627 kcal Electronic energy + Delta-G solvation = -30383.916454 eV Core-core repulsion = 26144.773561 eV Total energy + Delta-G solvation = -4239.142893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -40.69159 -38.71608 -37.47548 -36.32449 -35.95598 -35.58998 -34.74271 -32.28755 -30.50138 -29.91770 -29.82081 -27.86299 -27.40618 -24.96377 -23.89879 -23.25779 -20.80175 -20.32863 -19.99037 -18.86766 -18.32427 -17.32024 -16.95750 -16.87168 -16.59498 -16.27812 -15.61790 -15.36435 -15.10063 -14.78854 -14.49781 -14.34908 -14.13467 -14.01793 -13.68878 -13.59990 -13.08758 -12.96665 -12.80934 -12.53433 -12.45821 -12.38418 -12.21986 -12.07658 -11.98802 -11.83066 -11.45244 -11.22516 -11.15868 -10.99609 -10.79501 -10.66711 -10.27347 -10.14710 -9.89825 -9.81650 -9.55493 -9.48206 -8.69813 -8.34729 -6.86265 -5.66523 -3.07943 -0.16841 2.17546 2.49259 2.84635 3.40553 3.40987 3.45712 3.48368 3.76717 4.02962 4.12582 4.28015 4.40764 4.48578 4.48759 4.57433 4.82420 4.84683 4.98917 5.01620 5.18369 5.20873 5.27416 5.38072 5.40746 5.47826 5.61698 5.67477 5.69005 5.78790 5.82524 6.03881 6.23085 6.40160 6.59620 6.62736 6.76043 7.21879 7.33189 7.56466 7.71480 7.88727 8.03629 8.34896 9.18858 9.80046 10.42821 11.38196 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.027383 B = 0.002658 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.289180 B =10531.411632 C =10708.359563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.127 3.873 3 H 0.114 0.886 4 N -1.102 6.102 5 S 2.614 3.386 6 C -0.675 4.675 7 O -0.954 6.954 8 O -0.954 6.954 9 C 0.517 3.483 10 O -0.530 6.530 11 N -0.595 5.595 12 C 0.067 3.933 13 C 0.045 3.955 14 O -0.352 6.352 15 C 0.054 3.946 16 H 0.072 0.928 17 C 0.160 3.840 18 N -0.595 5.595 19 C -0.219 4.219 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.921 5.921 23 Si 0.916 3.084 24 H -0.281 1.281 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.138 3.862 28 C 0.099 3.901 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.428 0.572 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.031 0.969 43 H 0.253 0.747 44 H 0.028 0.972 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.165 6.275 21.972 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.015 3.985 3 H 0.132 0.868 4 N -0.863 5.863 5 S 2.705 3.295 6 C -0.825 4.825 7 O -0.945 6.945 8 O -0.944 6.944 9 C 0.302 3.698 10 O -0.406 6.406 11 N -0.328 5.328 12 C -0.055 4.055 13 C -0.033 4.033 14 O -0.270 6.270 15 C -0.006 4.006 16 H 0.090 0.910 17 C 0.034 3.966 18 N -0.321 5.321 19 C -0.347 4.347 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.747 3.253 24 H -0.206 1.206 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.011 3.989 28 C -0.005 4.005 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.265 0.735 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.120 0.880 41 H 0.141 0.859 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.145 6.017 21.970 23.593 hybrid contribution -1.190 -0.487 -0.570 1.407 sum -7.335 5.530 21.400 23.288 Atomic orbital electron populations 1.22406 0.92607 1.04565 1.03803 1.20740 0.95695 0.97159 0.84887 0.86849 1.55482 1.83922 1.21065 1.25863 1.04786 0.76692 0.74610 0.73403 1.30659 1.24528 1.14288 1.13054 1.93637 1.79416 1.58758 1.62638 1.93636 1.60726 1.60758 1.79272 1.20344 0.78155 0.87199 0.84053 1.90699 1.50041 1.15307 1.84521 1.47964 1.60298 1.13853 1.10671 1.22871 0.99364 0.81229 1.02073 1.22867 0.95574 0.96790 0.88084 1.88026 1.82040 1.29685 1.27206 1.24194 0.93548 0.81817 1.01021 0.91050 1.22150 0.86269 0.98377 0.89766 1.44338 1.08630 1.79361 0.99809 1.19075 0.95388 1.38668 0.81613 0.90401 1.24772 0.96117 1.01796 0.97823 1.69736 1.08032 1.52739 1.26478 0.85976 0.78240 0.77258 0.83842 1.20598 1.21723 1.21775 1.21316 0.94060 0.97688 0.85871 1.22367 0.95824 0.97288 0.85062 0.87693 0.90987 0.90100 0.90387 0.73482 0.84936 0.85136 0.85173 0.89382 0.89369 0.93058 0.88007 0.85883 0.95107 0.93651 0.95463 0.95516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 9.23 37.16 0.34 -0.72 16 2 C 0.13 1.14 2.36 -69.09 -0.16 0.98 16 3 H 0.11 0.83 5.83 -51.93 -0.30 0.52 16 4 N -1.10 -9.63 5.30 -5.88 -0.03 -9.66 16 5 S 2.61 20.69 6.08 -107.50 -0.65 20.04 16 6 C -0.68 -2.20 10.15 101.05 1.03 -1.17 16 7 O -0.95 -11.01 18.08 -57.54 -1.04 -12.05 16 8 O -0.95 -10.92 17.39 -57.54 -1.00 -11.92 16 9 C 0.52 7.14 6.89 -10.99 -0.08 7.06 16 10 O -0.53 -9.10 15.54 5.55 0.09 -9.02 16 11 N -0.59 -8.62 2.77 -163.78 -0.45 -9.08 16 12 C 0.07 0.76 5.75 -2.86 -0.02 0.75 16 13 C 0.05 0.59 7.01 37.44 0.26 0.85 16 14 O -0.35 -6.62 10.09 -35.23 -0.36 -6.97 16 15 C 0.05 1.04 4.12 -24.66 -0.10 0.94 16 16 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 17 C 0.16 3.85 5.47 -2.24 -0.01 3.83 16 18 N -0.60 -15.15 3.40 -170.00 -0.58 -15.72 16 19 C -0.22 -6.06 10.28 -15.06 -0.15 -6.22 16 20 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -26.55 10.09 55.49 0.56 -25.99 16 23 Si 0.92 21.95 29.55 -169.99 -5.02 16.92 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.14 2.92 6.89 -3.32 -0.02 2.90 16 28 C 0.10 1.81 3.01 -67.25 -0.20 1.61 16 29 H 0.11 2.04 7.12 -51.93 -0.37 1.67 16 30 H 0.07 0.21 5.89 -51.93 -0.31 -0.09 16 31 H 0.08 0.48 7.41 -51.93 -0.38 0.09 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.43 4.01 8.07 -34.47 -0.28 3.73 16 34 H 0.13 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.13 0.22 6.70 -51.92 -0.35 -0.13 16 37 H 0.09 0.63 5.33 -51.92 -0.28 0.35 16 38 H 0.09 1.04 7.57 -51.92 -0.39 0.64 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.12 3.37 5.86 -51.93 -0.30 3.07 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.03 0.56 7.26 -51.93 -0.38 0.18 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -37.94 364.57 -8.48 -46.41 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.27 Total: 1.11 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 0.79 Total: 10.44 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.50 Total: -60.45 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -2.31 Total: -39.96 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 20.69 SS G_CDS: -0.65 Total: 20.04 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.94 -8.48 -46.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218697179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.534 kcal (2) G-P(sol) polarization free energy of solvation -37.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds