Wall clock time and date at job start Wed Apr 1 2020 07:04:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.47615 * 2 1
4 4 C 1.52998 * 109.46994 * 239.99805 * 2 1 3
5 5 N 1.46502 * 109.47360 * 180.02562 * 4 2 1
6 6 C 1.34782 * 120.00166 * 180.02562 * 5 4 2
7 7 O 1.21350 * 119.99528 * 359.97438 * 6 5 4
8 8 C 1.49446 * 120.00084 * 179.97438 * 6 5 4
9 9 O 1.21356 * 119.99837 * 353.38299 * 8 6 5
10 10 N 1.34776 * 120.00037 * 173.38758 * 8 6 5
11 11 C 1.46926 * 120.62820 * 353.06527 * 10 8 6
12 12 C 1.53196 * 108.76922 * 126.41895 * 11 10 8
13 13 C 1.53036 * 109.34112 * 54.62209 * 12 11 10
14 14 C 1.53043 * 109.53413 * 298.67856 * 13 12 11
15 15 H 1.09001 * 109.50042 * 301.34757 * 14 13 12
16 16 C 1.50704 * 109.49240 * 181.28640 * 14 13 12
17 17 H 1.07995 * 120.00346 * 0.06542 * 16 14 13
18 18 C 1.37886 * 119.99595 * 180.34521 * 16 14 13
19 19 N 1.31514 * 119.99864 * 179.72759 * 18 16 14
20 20 Si 1.86795 * 120.00150 * 359.71814 * 18 16 14
21 21 H 1.48501 * 109.46845 * 90.00540 * 20 18 16
22 22 H 1.48496 * 109.47474 * 210.00464 * 20 18 16
23 23 H 1.48504 * 109.47401 * 330.00581 * 20 18 16
24 24 C 1.46931 * 120.62929 * 173.09459 * 10 8 6
25 25 S 1.81403 * 109.47166 * 120.00098 * 2 1 3
26 26 N 1.65605 * 104.44926 * 304.99758 * 25 2 1
27 27 O 1.42101 * 110.54116 * 56.62081 * 25 2 1
28 28 O 1.42101 * 110.54155 * 193.37236 * 25 2 1
29 29 H 1.08999 * 109.46893 * 59.99673 * 1 2 3
30 30 H 1.08993 * 109.47214 * 180.02562 * 1 2 3
31 31 H 1.09006 * 109.46729 * 299.99930 * 1 2 3
32 32 H 1.09007 * 109.47352 * 60.00069 * 4 2 1
33 33 H 1.09010 * 109.47442 * 300.00155 * 4 2 1
34 34 H 0.96996 * 120.00059 * 359.97438 * 5 4 2
35 35 H 1.09002 * 109.58673 * 246.20018 * 11 10 8
36 36 H 1.08995 * 109.58988 * 6.48860 * 11 10 8
37 37 H 1.09005 * 109.49633 * 174.58725 * 12 11 10
38 38 H 1.09002 * 109.49831 * 294.68233 * 12 11 10
39 39 H 1.09003 * 109.48723 * 178.64696 * 13 12 11
40 40 H 1.08994 * 109.43652 * 58.68064 * 13 12 11
41 41 H 0.97002 * 120.00070 * 179.97438 * 19 18 16
42 42 H 1.09000 * 109.58264 * 113.79778 * 24 10 8
43 43 H 1.08999 * 109.70240 * 353.44052 * 24 10 8
44 44 H 0.96993 * 119.99834 * 150.00451 * 26 25 2
45 45 H 0.97002 * 119.99661 * 329.99646 * 26 25 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 -1.2492
5 7 3.5050 -0.7219 -1.2490
6 6 4.1788 -1.3052 -2.2600
7 8 3.5720 -1.8303 -3.1703
8 6 5.6733 -1.3053 -2.2601
9 8 6.2801 -0.6787 -1.4163
10 7 6.3471 -2.0011 -3.1972
11 6 5.6344 -2.8841 -4.1305
12 6 6.0210 -2.5023 -5.5629
13 6 7.5445 -2.5378 -5.7033
14 6 8.1704 -1.5209 -4.7461
15 1 7.7889 -0.5253 -4.9726
16 6 9.6687 -1.5341 -4.9077
17 1 10.1289 -2.2003 -5.6224
18 6 10.4524 -0.6998 -4.1390
19 7 11.7602 -0.7152 -4.2762
20 14 9.6564 0.4524 -2.9028
21 1 9.5370 -0.2344 -1.5916
22 1 10.4938 1.6692 -2.7498
23 1 8.3057 0.8385 -3.3843
24 6 7.8084 -1.8915 -3.3045
25 16 2.1347 -0.8552 1.4811
26 7 1.4053 -0.0656 2.7409
27 8 1.6107 -2.1745 1.5440
28 8 3.5214 -0.6079 1.6684
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8901
32 1 1.6766 -0.2075 -2.1393
33 1 1.6766 -1.7490 -1.2492
34 1 3.9900 -0.3018 -0.5216
35 1 5.9152 -3.9200 -3.9401
36 1 4.5592 -2.7664 -3.9962
37 1 5.5747 -3.2105 -6.2612
38 1 5.6592 -1.4977 -5.7819
39 1 7.8210 -2.2899 -6.7281
40 1 7.9079 -3.5363 -5.4607
41 1 12.3116 -0.1280 -3.7356
42 1 8.2663 -2.8464 -3.0467
43 1 8.1697 -1.1181 -2.6266
44 1 1.2003 -0.5438 3.5595
45 1 1.1831 0.8752 2.6601
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001261602797.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 07:04:13
Heat of formation + Delta-G solvation = -121.407881 kcal
Electronic energy + Delta-G solvation = -29807.413822 eV
Core-core repulsion = 25567.080163 eV
Total energy + Delta-G solvation = -4240.333659 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.139 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-40.87399 -38.80021 -37.54034 -37.21147 -36.63918 -36.36628 -34.07683 -33.40911
-32.91819 -31.90960 -30.49550 -27.76052 -25.68711 -25.14351 -23.56248 -22.52962
-21.94037 -20.51261 -19.83810 -19.01788 -18.25620 -18.02058 -17.42729 -17.08648
-16.91628 -16.66525 -16.11749 -15.84867 -15.41896 -15.23964 -14.61130 -14.30215
-14.12767 -13.98688 -13.79701 -13.58520 -13.23242 -13.07619 -13.01799 -12.73037
-12.61002 -12.52579 -12.46288 -12.40909 -12.19343 -12.12529 -11.69725 -11.14221
-11.06141 -10.91413 -10.84375 -10.49642 -10.33512 -10.10606 -9.76011 -9.69840
-9.47506 -9.13313 -8.76044 -8.60579 -8.15153 -6.10857 -4.12072 -0.34771
1.45552 2.25585 2.30521 3.10610 3.31441 3.37048 3.42350 3.48066
3.53052 3.60397 3.76277 4.22917 4.32036 4.39868 4.41531 4.77844
4.80863 5.02497 5.07893 5.21180 5.31727 5.40336 5.45039 5.52261
5.60237 5.77680 6.03505 6.13733 6.16762 6.37389 6.47767 6.50657
6.51457 6.60211 6.75469 6.80517 6.86128 7.14810 7.42730 7.58861
7.70579 7.75907 8.20108 8.49071 8.92947 9.50533 11.01235
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.017443 B = 0.003050 C = 0.002737
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1604.803589 B = 9178.381974 C =10226.597715
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.607 4.607
3 H 0.149 0.851
4 C 0.130 3.870
5 N -0.727 5.727
6 C 0.521 3.479
7 O -0.502 6.502
8 C 0.493 3.507
9 O -0.523 6.523
10 N -0.567 5.567
11 C 0.050 3.950
12 C -0.130 4.130
13 C -0.103 4.103
14 C 0.005 3.995
15 H 0.031 0.969
16 C -0.515 4.515
17 H 0.079 0.921
18 C 0.073 3.927
19 N -0.895 5.895
20 Si 0.877 3.123
21 H -0.270 1.270
22 H -0.294 1.294
23 H -0.266 1.266
24 C 0.098 3.902
25 S 2.608 3.392
26 N -1.248 6.248
27 O -0.951 6.951
28 O -0.945 6.945
29 H 0.085 0.915
30 H 0.081 0.919
31 H 0.077 0.923
32 H 0.103 0.897
33 H 0.095 0.905
34 H 0.421 0.579
35 H 0.062 0.938
36 H 0.146 0.854
37 H 0.065 0.935
38 H 0.059 0.941
39 H 0.059 0.941
40 H 0.056 0.944
41 H 0.265 0.735
42 H 0.074 0.926
43 H 0.079 0.921
44 H 0.422 0.578
45 H 0.413 0.587
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.018 2.275 10.722 30.085
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.716 4.716
3 H 0.167 0.833
4 C 0.005 3.995
5 N -0.386 5.386
6 C 0.304 3.696
7 O -0.378 6.378
8 C 0.274 3.726
9 O -0.400 6.400
10 N -0.299 5.299
11 C -0.071 4.071
12 C -0.168 4.168
13 C -0.141 4.141
14 C -0.014 4.014
15 H 0.049 0.951
16 C -0.553 4.553
17 H 0.097 0.903
18 C -0.130 4.130
19 N -0.532 5.532
20 Si 0.706 3.294
21 H -0.196 1.196
22 H -0.221 1.221
23 H -0.191 1.191
24 C -0.022 4.022
25 S 2.697 3.303
26 N -0.921 5.921
27 O -0.940 6.940
28 O -0.934 6.934
29 H 0.104 0.896
30 H 0.100 0.900
31 H 0.096 0.904
32 H 0.121 0.879
33 H 0.114 0.886
34 H 0.261 0.739
35 H 0.081 0.919
36 H 0.162 0.838
37 H 0.084 0.916
38 H 0.078 0.922
39 H 0.078 0.922
40 H 0.075 0.925
41 H 0.075 0.925
42 H 0.093 0.907
43 H 0.097 0.903
44 H 0.252 0.748
45 H 0.239 0.761
Dipole moment (debyes) X Y Z Total
from point charges -27.226 1.449 10.486 29.211
hybrid contribution -0.473 1.698 1.068 2.061
sum -27.699 3.147 11.554 30.176
Atomic orbital electron populations
1.21567 0.87979 1.04910 1.04956 1.30568 1.08593 1.14697 1.17705
0.83335 1.21239 0.79579 1.01967 0.96665 1.46229 1.06892 1.58791
1.26639 1.20628 0.89502 0.77873 0.81641 1.90332 1.69822 1.43232
1.34429 1.19769 0.87234 0.82224 0.83369 1.90789 1.69089 1.43486
1.36620 1.48373 1.09293 1.41636 1.30644 1.23162 1.02242 0.92721
0.89001 1.21899 0.98109 1.01411 0.95393 1.21483 0.92467 0.99977
1.00149 1.19501 0.97127 0.95419 0.89370 0.95105 1.20963 0.88158
1.23243 1.22920 0.90308 1.25051 0.94743 0.96485 0.96709 1.69886
1.03920 1.38836 1.40574 0.87025 0.79223 0.80749 0.82367 1.19618
1.22110 1.19084 1.22853 0.75181 1.02509 1.01684 1.05262 0.74837
0.74707 0.75530 1.53188 1.82990 1.23406 1.32534 1.93619 1.80157
1.34931 1.85306 1.93682 1.30952 1.85204 1.83531 0.89581 0.89985
0.90437 0.87928 0.88647 0.73927 0.91941 0.83793 0.91603 0.92208
0.92220 0.92500 0.92464 0.90738 0.90289 0.74816 0.76053
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.35 9.07 37.16 0.34 -0.02 16
2 C -0.61 -3.01 3.14 -26.73 -0.08 -3.10 16
3 H 0.15 0.39 8.14 -51.92 -0.42 -0.03 16
4 C 0.13 1.07 5.12 -4.04 -0.02 1.04 16
5 N -0.73 -9.11 5.25 -60.72 -0.32 -9.43 16
6 C 0.52 8.24 7.78 -11.58 -0.09 8.15 16
7 O -0.50 -7.82 13.10 5.50 0.07 -7.75 16
8 C 0.49 9.77 7.74 -11.59 -0.09 9.68 16
9 O -0.52 -11.79 15.95 5.49 0.09 -11.71 16
10 N -0.57 -11.41 2.97 -173.28 -0.51 -11.93 16
11 C 0.05 0.83 6.27 -3.71 -0.02 0.81 16
12 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16
13 C -0.10 -2.03 5.11 -26.69 -0.14 -2.17 16
14 C 0.01 0.13 1.84 -91.65 -0.17 -0.04 16
15 H 0.03 0.78 7.21 -51.93 -0.37 0.40 16
16 C -0.51 -14.44 9.15 -34.44 -0.31 -14.75 16
17 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16
18 C 0.07 2.14 5.45 -17.82 -0.10 2.04 16
19 N -0.89 -27.56 13.96 55.43 0.77 -26.79 16
20 Si 0.88 23.25 24.32 -169.99 -4.13 19.11 16
21 H -0.27 -7.22 6.91 56.52 0.39 -6.83 16
22 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16
23 H -0.27 -6.99 6.54 56.52 0.37 -6.62 16
24 C 0.10 2.27 5.09 -3.71 -0.02 2.25 16
25 S 2.61 20.63 5.10 -107.50 -0.55 20.09 16
26 N -1.25 -4.60 8.81 60.35 0.53 -4.07 16
27 O -0.95 -10.61 18.09 -57.54 -1.04 -11.65 16
28 O -0.95 -11.77 16.40 -57.54 -0.94 -12.72 16
29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16
30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16
31 H 0.08 0.03 7.68 -51.93 -0.40 -0.37 16
32 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16
33 H 0.10 0.76 8.14 -51.92 -0.42 0.33 16
34 H 0.42 5.45 6.10 -40.82 -0.25 5.20 16
35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
36 H 0.15 2.29 3.78 -56.75 -0.21 2.07 16
37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16
38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16
40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
41 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16
42 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16
43 H 0.08 2.02 2.36 -51.93 -0.12 1.90 16
44 H 0.42 1.22 8.96 -34.47 -0.31 0.91 16
45 H 0.41 0.27 8.90 -34.47 -0.31 -0.03 16
LS Contribution 367.19 15.07 5.53 5.53
Total: -1.00 -39.03 367.19 -7.59 -46.62
By element:
Atomic # 1 Polarization: 9.32 SS G_CDS: -6.22 Total: 3.10 kcal
Atomic # 6 Polarization: 2.45 SS G_CDS: -0.87 Total: 1.59 kcal
Atomic # 7 Polarization: -52.68 SS G_CDS: 0.47 Total: -52.21 kcal
Atomic # 8 Polarization: -42.00 SS G_CDS: -1.82 Total: -43.83 kcal
Atomic # 14 Polarization: 23.25 SS G_CDS: -4.13 Total: 19.11 kcal
Atomic # 16 Polarization: 20.63 SS G_CDS: -0.55 Total: 20.09 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -39.03 -7.59 -46.62 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001261602797.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -74.785 kcal
(2) G-P(sol) polarization free energy of solvation -39.030 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.815 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.623 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.408 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds