Wall clock time and date at job start Wed Apr 1 2020 07:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47615 * 2 1 4 4 C 1.52998 * 109.46994 * 239.99805 * 2 1 3 5 5 N 1.46502 * 109.47360 * 180.02562 * 4 2 1 6 6 C 1.34782 * 120.00166 * 180.02562 * 5 4 2 7 7 O 1.21350 * 119.99528 * 359.97438 * 6 5 4 8 8 C 1.49446 * 120.00084 * 179.97438 * 6 5 4 9 9 O 1.21356 * 119.99837 * 353.38299 * 8 6 5 10 10 N 1.34776 * 120.00037 * 173.38758 * 8 6 5 11 11 C 1.46926 * 120.62820 * 353.06527 * 10 8 6 12 12 C 1.53196 * 108.76922 * 126.41895 * 11 10 8 13 13 C 1.53036 * 109.34112 * 54.62209 * 12 11 10 14 14 C 1.53043 * 109.53413 * 298.67856 * 13 12 11 15 15 H 1.09001 * 109.50042 * 301.34757 * 14 13 12 16 16 C 1.50704 * 109.49240 * 181.28640 * 14 13 12 17 17 H 1.07995 * 120.00346 * 0.06542 * 16 14 13 18 18 C 1.37886 * 119.99595 * 180.34521 * 16 14 13 19 19 N 1.31514 * 119.99864 * 179.72759 * 18 16 14 20 20 Si 1.86795 * 120.00150 * 359.71814 * 18 16 14 21 21 H 1.48501 * 109.46845 * 90.00540 * 20 18 16 22 22 H 1.48496 * 109.47474 * 210.00464 * 20 18 16 23 23 H 1.48504 * 109.47401 * 330.00581 * 20 18 16 24 24 C 1.46931 * 120.62929 * 173.09459 * 10 8 6 25 25 S 1.81403 * 109.47166 * 120.00098 * 2 1 3 26 26 N 1.65605 * 104.44926 * 304.99758 * 25 2 1 27 27 O 1.42101 * 110.54116 * 56.62081 * 25 2 1 28 28 O 1.42101 * 110.54155 * 193.37236 * 25 2 1 29 29 H 1.08999 * 109.46893 * 59.99673 * 1 2 3 30 30 H 1.08993 * 109.47214 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46729 * 299.99930 * 1 2 3 32 32 H 1.09007 * 109.47352 * 60.00069 * 4 2 1 33 33 H 1.09010 * 109.47442 * 300.00155 * 4 2 1 34 34 H 0.96996 * 120.00059 * 359.97438 * 5 4 2 35 35 H 1.09002 * 109.58673 * 246.20018 * 11 10 8 36 36 H 1.08995 * 109.58988 * 6.48860 * 11 10 8 37 37 H 1.09005 * 109.49633 * 174.58725 * 12 11 10 38 38 H 1.09002 * 109.49831 * 294.68233 * 12 11 10 39 39 H 1.09003 * 109.48723 * 178.64696 * 13 12 11 40 40 H 1.08994 * 109.43652 * 58.68064 * 13 12 11 41 41 H 0.97002 * 120.00070 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.58264 * 113.79778 * 24 10 8 43 43 H 1.08999 * 109.70240 * 353.44052 * 24 10 8 44 44 H 0.96993 * 119.99834 * 150.00451 * 26 25 2 45 45 H 0.97002 * 119.99661 * 329.99646 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5050 -0.7219 -1.2490 6 6 4.1788 -1.3052 -2.2600 7 8 3.5720 -1.8303 -3.1703 8 6 5.6733 -1.3053 -2.2601 9 8 6.2801 -0.6787 -1.4163 10 7 6.3471 -2.0011 -3.1972 11 6 5.6344 -2.8841 -4.1305 12 6 6.0210 -2.5023 -5.5629 13 6 7.5445 -2.5378 -5.7033 14 6 8.1704 -1.5209 -4.7461 15 1 7.7889 -0.5253 -4.9726 16 6 9.6687 -1.5341 -4.9077 17 1 10.1289 -2.2003 -5.6224 18 6 10.4524 -0.6998 -4.1390 19 7 11.7602 -0.7152 -4.2762 20 14 9.6564 0.4524 -2.9028 21 1 9.5370 -0.2344 -1.5916 22 1 10.4938 1.6692 -2.7498 23 1 8.3057 0.8385 -3.3843 24 6 7.8084 -1.8915 -3.3045 25 16 2.1347 -0.8552 1.4811 26 7 1.4053 -0.0656 2.7409 27 8 1.6107 -2.1745 1.5440 28 8 3.5214 -0.6079 1.6684 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6766 -0.2075 -2.1393 33 1 1.6766 -1.7490 -1.2492 34 1 3.9900 -0.3018 -0.5216 35 1 5.9152 -3.9200 -3.9401 36 1 4.5592 -2.7664 -3.9962 37 1 5.5747 -3.2105 -6.2612 38 1 5.6592 -1.4977 -5.7819 39 1 7.8210 -2.2899 -6.7281 40 1 7.9079 -3.5363 -5.4607 41 1 12.3116 -0.1280 -3.7356 42 1 8.2663 -2.8464 -3.0467 43 1 8.1697 -1.1181 -2.6266 44 1 1.2003 -0.5438 3.5595 45 1 1.1831 0.8752 2.6601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261602797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:04:13 Heat of formation + Delta-G solvation = -121.407881 kcal Electronic energy + Delta-G solvation = -29807.413822 eV Core-core repulsion = 25567.080163 eV Total energy + Delta-G solvation = -4240.333659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.87399 -38.80021 -37.54034 -37.21147 -36.63918 -36.36628 -34.07683 -33.40911 -32.91819 -31.90960 -30.49550 -27.76052 -25.68711 -25.14351 -23.56248 -22.52962 -21.94037 -20.51261 -19.83810 -19.01788 -18.25620 -18.02058 -17.42729 -17.08648 -16.91628 -16.66525 -16.11749 -15.84867 -15.41896 -15.23964 -14.61130 -14.30215 -14.12767 -13.98688 -13.79701 -13.58520 -13.23242 -13.07619 -13.01799 -12.73037 -12.61002 -12.52579 -12.46288 -12.40909 -12.19343 -12.12529 -11.69725 -11.14221 -11.06141 -10.91413 -10.84375 -10.49642 -10.33512 -10.10606 -9.76011 -9.69840 -9.47506 -9.13313 -8.76044 -8.60579 -8.15153 -6.10857 -4.12072 -0.34771 1.45552 2.25585 2.30521 3.10610 3.31441 3.37048 3.42350 3.48066 3.53052 3.60397 3.76277 4.22917 4.32036 4.39868 4.41531 4.77844 4.80863 5.02497 5.07893 5.21180 5.31727 5.40336 5.45039 5.52261 5.60237 5.77680 6.03505 6.13733 6.16762 6.37389 6.47767 6.50657 6.51457 6.60211 6.75469 6.80517 6.86128 7.14810 7.42730 7.58861 7.70579 7.75907 8.20108 8.49071 8.92947 9.50533 11.01235 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.003050 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.803589 B = 9178.381974 C =10226.597715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.607 4.607 3 H 0.149 0.851 4 C 0.130 3.870 5 N -0.727 5.727 6 C 0.521 3.479 7 O -0.502 6.502 8 C 0.493 3.507 9 O -0.523 6.523 10 N -0.567 5.567 11 C 0.050 3.950 12 C -0.130 4.130 13 C -0.103 4.103 14 C 0.005 3.995 15 H 0.031 0.969 16 C -0.515 4.515 17 H 0.079 0.921 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.877 3.123 21 H -0.270 1.270 22 H -0.294 1.294 23 H -0.266 1.266 24 C 0.098 3.902 25 S 2.608 3.392 26 N -1.248 6.248 27 O -0.951 6.951 28 O -0.945 6.945 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.421 0.579 35 H 0.062 0.938 36 H 0.146 0.854 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.265 0.735 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.422 0.578 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.018 2.275 10.722 30.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.716 4.716 3 H 0.167 0.833 4 C 0.005 3.995 5 N -0.386 5.386 6 C 0.304 3.696 7 O -0.378 6.378 8 C 0.274 3.726 9 O -0.400 6.400 10 N -0.299 5.299 11 C -0.071 4.071 12 C -0.168 4.168 13 C -0.141 4.141 14 C -0.014 4.014 15 H 0.049 0.951 16 C -0.553 4.553 17 H 0.097 0.903 18 C -0.130 4.130 19 N -0.532 5.532 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.221 1.221 23 H -0.191 1.191 24 C -0.022 4.022 25 S 2.697 3.303 26 N -0.921 5.921 27 O -0.940 6.940 28 O -0.934 6.934 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.261 0.739 35 H 0.081 0.919 36 H 0.162 0.838 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.252 0.748 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -27.226 1.449 10.486 29.211 hybrid contribution -0.473 1.698 1.068 2.061 sum -27.699 3.147 11.554 30.176 Atomic orbital electron populations 1.21567 0.87979 1.04910 1.04956 1.30568 1.08593 1.14697 1.17705 0.83335 1.21239 0.79579 1.01967 0.96665 1.46229 1.06892 1.58791 1.26639 1.20628 0.89502 0.77873 0.81641 1.90332 1.69822 1.43232 1.34429 1.19769 0.87234 0.82224 0.83369 1.90789 1.69089 1.43486 1.36620 1.48373 1.09293 1.41636 1.30644 1.23162 1.02242 0.92721 0.89001 1.21899 0.98109 1.01411 0.95393 1.21483 0.92467 0.99977 1.00149 1.19501 0.97127 0.95419 0.89370 0.95105 1.20963 0.88158 1.23243 1.22920 0.90308 1.25051 0.94743 0.96485 0.96709 1.69886 1.03920 1.38836 1.40574 0.87025 0.79223 0.80749 0.82367 1.19618 1.22110 1.19084 1.22853 0.75181 1.02509 1.01684 1.05262 0.74837 0.74707 0.75530 1.53188 1.82990 1.23406 1.32534 1.93619 1.80157 1.34931 1.85306 1.93682 1.30952 1.85204 1.83531 0.89581 0.89985 0.90437 0.87928 0.88647 0.73927 0.91941 0.83793 0.91603 0.92208 0.92220 0.92500 0.92464 0.90738 0.90289 0.74816 0.76053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.35 9.07 37.16 0.34 -0.02 16 2 C -0.61 -3.01 3.14 -26.73 -0.08 -3.10 16 3 H 0.15 0.39 8.14 -51.92 -0.42 -0.03 16 4 C 0.13 1.07 5.12 -4.04 -0.02 1.04 16 5 N -0.73 -9.11 5.25 -60.72 -0.32 -9.43 16 6 C 0.52 8.24 7.78 -11.58 -0.09 8.15 16 7 O -0.50 -7.82 13.10 5.50 0.07 -7.75 16 8 C 0.49 9.77 7.74 -11.59 -0.09 9.68 16 9 O -0.52 -11.79 15.95 5.49 0.09 -11.71 16 10 N -0.57 -11.41 2.97 -173.28 -0.51 -11.93 16 11 C 0.05 0.83 6.27 -3.71 -0.02 0.81 16 12 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 13 C -0.10 -2.03 5.11 -26.69 -0.14 -2.17 16 14 C 0.01 0.13 1.84 -91.65 -0.17 -0.04 16 15 H 0.03 0.78 7.21 -51.93 -0.37 0.40 16 16 C -0.51 -14.44 9.15 -34.44 -0.31 -14.75 16 17 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 18 C 0.07 2.14 5.45 -17.82 -0.10 2.04 16 19 N -0.89 -27.56 13.96 55.43 0.77 -26.79 16 20 Si 0.88 23.25 24.32 -169.99 -4.13 19.11 16 21 H -0.27 -7.22 6.91 56.52 0.39 -6.83 16 22 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 23 H -0.27 -6.99 6.54 56.52 0.37 -6.62 16 24 C 0.10 2.27 5.09 -3.71 -0.02 2.25 16 25 S 2.61 20.63 5.10 -107.50 -0.55 20.09 16 26 N -1.25 -4.60 8.81 60.35 0.53 -4.07 16 27 O -0.95 -10.61 18.09 -57.54 -1.04 -11.65 16 28 O -0.95 -11.77 16.40 -57.54 -0.94 -12.72 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.03 7.68 -51.93 -0.40 -0.37 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.76 8.14 -51.92 -0.42 0.33 16 34 H 0.42 5.45 6.10 -40.82 -0.25 5.20 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.15 2.29 3.78 -56.75 -0.21 2.07 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 43 H 0.08 2.02 2.36 -51.93 -0.12 1.90 16 44 H 0.42 1.22 8.96 -34.47 -0.31 0.91 16 45 H 0.41 0.27 8.90 -34.47 -0.31 -0.03 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -39.03 367.19 -7.59 -46.62 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.22 Total: 3.10 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -0.87 Total: 1.59 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.47 Total: -52.21 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -1.82 Total: -43.83 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -4.13 Total: 19.11 kcal Atomic # 16 Polarization: 20.63 SS G_CDS: -0.55 Total: 20.09 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -39.03 -7.59 -46.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261602797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.785 kcal (2) G-P(sol) polarization free energy of solvation -39.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds