Wall clock time and date at job start Wed Apr 1 2020 07:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47615 * 2 1 4 4 C 1.52998 * 109.46994 * 239.99805 * 2 1 3 5 5 N 1.46502 * 109.47360 * 180.02562 * 4 2 1 6 6 C 1.34782 * 120.00166 * 180.02562 * 5 4 2 7 7 O 1.21350 * 119.99528 * 359.97438 * 6 5 4 8 8 C 1.49446 * 120.00084 * 179.97438 * 6 5 4 9 9 O 1.21356 * 119.99837 * 353.38299 * 8 6 5 10 10 N 1.34776 * 120.00037 * 173.38758 * 8 6 5 11 11 C 1.46926 * 120.62820 * 353.06527 * 10 8 6 12 12 C 1.53196 * 108.76922 * 126.41895 * 11 10 8 13 13 C 1.53036 * 109.34112 * 54.62209 * 12 11 10 14 14 C 1.53043 * 109.53413 * 298.67856 * 13 12 11 15 15 H 1.09001 * 109.50042 * 301.34757 * 14 13 12 16 16 C 1.50704 * 109.49240 * 181.28640 * 14 13 12 17 17 H 1.07995 * 120.00346 * 0.06542 * 16 14 13 18 18 C 1.37886 * 119.99595 * 180.34521 * 16 14 13 19 19 N 1.31514 * 119.99864 * 179.72759 * 18 16 14 20 20 Si 1.86795 * 120.00150 * 359.71814 * 18 16 14 21 21 H 1.48501 * 109.46845 * 90.00540 * 20 18 16 22 22 H 1.48496 * 109.47474 * 210.00464 * 20 18 16 23 23 H 1.48504 * 109.47401 * 330.00581 * 20 18 16 24 24 C 1.46931 * 120.62929 * 173.09459 * 10 8 6 25 25 S 1.81403 * 109.47166 * 120.00098 * 2 1 3 26 26 N 1.65605 * 104.44926 * 304.99758 * 25 2 1 27 27 O 1.42101 * 110.54116 * 56.62081 * 25 2 1 28 28 O 1.42101 * 110.54155 * 193.37236 * 25 2 1 29 29 H 1.08999 * 109.46893 * 59.99673 * 1 2 3 30 30 H 1.08993 * 109.47214 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46729 * 299.99930 * 1 2 3 32 32 H 1.09007 * 109.47352 * 60.00069 * 4 2 1 33 33 H 1.09010 * 109.47442 * 300.00155 * 4 2 1 34 34 H 0.96996 * 120.00059 * 359.97438 * 5 4 2 35 35 H 1.09002 * 109.58673 * 246.20018 * 11 10 8 36 36 H 1.08995 * 109.58988 * 6.48860 * 11 10 8 37 37 H 1.09005 * 109.49633 * 174.58725 * 12 11 10 38 38 H 1.09002 * 109.49831 * 294.68233 * 12 11 10 39 39 H 1.09003 * 109.48723 * 178.64696 * 13 12 11 40 40 H 1.08994 * 109.43652 * 58.68064 * 13 12 11 41 41 H 0.97002 * 120.00070 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.58264 * 113.79778 * 24 10 8 43 43 H 1.08999 * 109.70240 * 353.44052 * 24 10 8 44 44 H 0.96993 * 119.99834 * 150.00451 * 26 25 2 45 45 H 0.97002 * 119.99661 * 329.99646 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5050 -0.7219 -1.2490 6 6 4.1788 -1.3052 -2.2600 7 8 3.5720 -1.8303 -3.1703 8 6 5.6733 -1.3053 -2.2601 9 8 6.2801 -0.6787 -1.4163 10 7 6.3471 -2.0011 -3.1972 11 6 5.6344 -2.8841 -4.1305 12 6 6.0210 -2.5023 -5.5629 13 6 7.5445 -2.5378 -5.7033 14 6 8.1704 -1.5209 -4.7461 15 1 7.7889 -0.5253 -4.9726 16 6 9.6687 -1.5341 -4.9077 17 1 10.1289 -2.2003 -5.6224 18 6 10.4524 -0.6998 -4.1390 19 7 11.7602 -0.7152 -4.2762 20 14 9.6564 0.4524 -2.9028 21 1 9.5370 -0.2344 -1.5916 22 1 10.4938 1.6692 -2.7498 23 1 8.3057 0.8385 -3.3843 24 6 7.8084 -1.8915 -3.3045 25 16 2.1347 -0.8552 1.4811 26 7 1.4053 -0.0656 2.7409 27 8 1.6107 -2.1745 1.5440 28 8 3.5214 -0.6079 1.6684 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6766 -0.2075 -2.1393 33 1 1.6766 -1.7490 -1.2492 34 1 3.9900 -0.3018 -0.5216 35 1 5.9152 -3.9200 -3.9401 36 1 4.5592 -2.7664 -3.9962 37 1 5.5747 -3.2105 -6.2612 38 1 5.6592 -1.4977 -5.7819 39 1 7.8210 -2.2899 -6.7281 40 1 7.9079 -3.5363 -5.4607 41 1 12.3116 -0.1280 -3.7356 42 1 8.2663 -2.8464 -3.0467 43 1 8.1697 -1.1181 -2.6266 44 1 1.2003 -0.5438 3.5595 45 1 1.1831 0.8752 2.6601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261602797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:04:12 Heat of formation + Delta-G solvation = -157.008597 kcal Electronic energy + Delta-G solvation = -29808.957585 eV Core-core repulsion = 25567.080163 eV Total energy + Delta-G solvation = -4241.877421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.21468 -40.16595 -38.77138 -38.26011 -37.53033 -37.08883 -35.32805 -34.52471 -33.77422 -33.52533 -32.28697 -28.67962 -27.20604 -26.78611 -24.35928 -23.69274 -23.53905 -21.79483 -20.77438 -20.34236 -19.16705 -18.82173 -18.73011 -18.34360 -18.23612 -17.60854 -17.27611 -17.04822 -16.41748 -16.34352 -16.17539 -15.78345 -15.61272 -15.15090 -14.96411 -14.79303 -14.62798 -14.29095 -14.15444 -13.79257 -13.64671 -13.46373 -13.31164 -13.24843 -13.20855 -13.16371 -13.05712 -12.58335 -12.50435 -12.36056 -12.14139 -11.78964 -11.63251 -11.61342 -11.35738 -11.26143 -11.10215 -10.83357 -10.64606 -10.18708 -9.78709 -8.40767 -6.43144 -0.91597 0.10286 1.06517 1.21600 1.28949 1.36107 1.80558 1.91615 2.18478 2.27889 2.55869 2.94989 3.01676 3.09323 3.24984 3.71164 3.91924 3.94429 4.11407 4.14810 4.33972 4.37024 4.43249 4.48202 4.54070 4.62709 4.70253 4.73130 4.78770 4.90025 5.04797 5.14344 5.18280 5.23137 5.27148 5.31690 5.47097 5.55582 5.61620 5.69450 6.15713 6.22894 6.33674 6.46784 6.65090 6.72381 7.22177 8.75310 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.003050 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.803589 B = 9178.381974 C =10226.597715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.578 4.578 3 H 0.180 0.820 4 C 0.115 3.885 5 N -0.717 5.717 6 C 0.528 3.472 7 O -0.499 6.499 8 C 0.481 3.519 9 O -0.559 6.559 10 N -0.573 5.573 11 C 0.047 3.953 12 C -0.120 4.120 13 C -0.100 4.100 14 C 0.006 3.994 15 H 0.018 0.982 16 C -0.511 4.511 17 H 0.052 0.948 18 C 0.029 3.971 19 N -0.936 5.936 20 Si 0.931 3.069 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.102 3.898 25 S 2.602 3.398 26 N -1.231 6.231 27 O -0.991 6.991 28 O -1.001 7.001 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.419 0.581 35 H 0.077 0.923 36 H 0.161 0.839 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.268 0.732 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.427 0.573 45 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.103 2.991 10.631 33.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.691 4.691 3 H 0.197 0.803 4 C -0.008 4.008 5 N -0.374 5.374 6 C 0.309 3.691 7 O -0.376 6.376 8 C 0.264 3.736 9 O -0.438 6.438 10 N -0.305 5.305 11 C -0.073 4.073 12 C -0.158 4.158 13 C -0.137 4.137 14 C -0.014 4.014 15 H 0.036 0.964 16 C -0.550 4.550 17 H 0.071 0.929 18 C -0.170 4.170 19 N -0.576 5.576 20 Si 0.761 3.239 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.190 1.190 24 C -0.019 4.019 25 S 2.695 3.305 26 N -0.909 5.909 27 O -0.981 6.981 28 O -0.990 6.990 29 H 0.123 0.877 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.144 0.856 33 H 0.118 0.882 34 H 0.259 0.741 35 H 0.096 0.904 36 H 0.177 0.823 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.259 0.741 45 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -31.361 2.155 10.428 33.120 hybrid contribution 0.711 1.470 1.073 1.954 sum -30.650 3.625 11.501 32.937 Atomic orbital electron populations 1.21760 0.85471 1.05457 1.07247 1.30380 1.10315 1.15070 1.13308 0.80271 1.21714 0.76632 1.03294 0.99151 1.46308 1.08824 1.57139 1.25149 1.19755 0.87471 0.79074 0.82816 1.90306 1.68963 1.43745 1.34596 1.20567 0.89405 0.81158 0.82462 1.90760 1.70430 1.44764 1.37895 1.48410 1.08084 1.42365 1.31600 1.23461 1.02694 0.92836 0.88277 1.21856 0.95321 1.02479 0.96165 1.21427 0.94905 0.98570 0.98840 1.19429 0.94540 0.96230 0.91206 0.96362 1.21273 0.90628 1.21705 1.21384 0.92929 1.25639 0.95024 0.98000 0.98344 1.69980 1.05094 1.40334 1.42144 0.86143 0.78372 0.79262 0.80172 1.20490 1.21548 1.19041 1.22404 0.77827 1.01479 1.00215 1.05011 0.74003 0.74535 0.76965 1.52734 1.82195 1.24248 1.31723 1.93567 1.80353 1.37820 1.86354 1.93629 1.34624 1.85864 1.84877 0.87698 0.90421 0.87783 0.85561 0.88219 0.74149 0.90431 0.82305 0.87725 0.92509 0.92152 0.92218 0.92243 0.90939 0.92792 0.74140 0.74066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.12 9.07 71.98 0.65 0.53 16 2 C -0.58 -3.77 3.14 30.59 0.10 -3.67 16 3 H 0.18 0.15 8.14 -2.39 -0.02 0.13 16 4 C 0.12 1.52 5.12 86.38 0.44 1.96 16 5 N -0.72 -16.62 5.25 -464.39 -2.44 -19.05 16 6 C 0.53 15.75 7.78 87.27 0.68 16.43 16 7 O -0.50 -14.12 13.10 -3.25 -0.04 -14.16 16 8 C 0.48 18.79 7.74 87.27 0.68 19.47 16 9 O -0.56 -25.47 15.95 -3.26 -0.05 -25.52 16 10 N -0.57 -22.54 2.97 -820.48 -2.44 -24.97 16 11 C 0.05 1.44 6.27 86.36 0.54 1.98 16 12 C -0.12 -3.61 6.08 30.67 0.19 -3.43 16 13 C -0.10 -3.80 5.11 30.62 0.16 -3.64 16 14 C 0.01 0.26 1.84 -11.46 -0.02 0.24 16 15 H 0.02 0.92 7.21 -2.39 -0.02 0.90 16 16 C -0.51 -29.34 9.15 25.60 0.23 -29.11 16 17 H 0.05 3.23 7.99 -2.91 -0.02 3.21 16 18 C 0.03 1.73 5.45 84.66 0.46 2.19 16 19 N -0.94 -59.17 13.96 21.45 0.30 -58.87 16 20 Si 0.93 49.59 24.32 68.60 1.67 51.25 16 21 H -0.28 -15.04 6.91 99.48 0.69 -14.35 16 22 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 23 H -0.27 -13.92 6.54 99.48 0.65 -13.27 16 24 C 0.10 4.78 5.09 86.36 0.44 5.21 16 25 S 2.60 37.98 5.10 -56.49 -0.29 37.69 16 26 N -1.23 -6.60 8.81 37.02 0.33 -6.27 16 27 O -0.99 -21.64 18.09 -127.65 -2.31 -23.95 16 28 O -1.00 -25.03 16.40 -127.65 -2.09 -27.12 16 29 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.10 -0.41 7.68 -2.38 -0.02 -0.43 16 32 H 0.13 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.42 10.43 6.10 -92.71 -0.57 9.87 16 35 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.16 4.54 3.78 -78.74 -0.30 4.24 16 37 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.27 15.98 8.31 -92.71 -0.77 15.20 16 42 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.05 2.80 2.36 -2.39 -0.01 2.79 16 44 H 0.43 1.80 8.96 -96.75 -0.87 0.93 16 45 H 0.43 -0.71 8.90 -96.74 -0.86 -1.57 16 Total: -1.00 -88.43 367.19 -4.42 -92.85 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -1.60 Total: 9.98 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 4.54 Total: 8.16 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -4.25 Total: -109.17 kcal Atomic # 8 Polarization: -86.26 SS G_CDS: -4.50 Total: -90.76 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 1.67 Total: 51.25 kcal Atomic # 16 Polarization: 37.98 SS G_CDS: -0.29 Total: 37.69 kcal Total: -88.43 -4.42 -92.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261602797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.159 kcal (2) G-P(sol) polarization free energy of solvation -88.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds