Wall clock time and date at job start Wed Apr 1 2020 07:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47567 * 2 1 4 4 C 1.52996 * 109.47311 * 239.99641 * 2 1 3 5 5 N 1.46497 * 109.47277 * 180.02562 * 4 2 1 6 6 C 1.34777 * 120.00299 * 180.02562 * 5 4 2 7 7 O 1.21352 * 120.00085 * 359.97438 * 6 5 4 8 8 C 1.49449 * 120.00125 * 180.02562 * 6 5 4 9 9 O 1.21349 * 120.00092 * 6.39611 * 8 6 5 10 10 N 1.34778 * 119.99942 * 186.39413 * 8 6 5 11 11 C 1.46926 * 120.63148 * 7.08744 * 10 8 6 12 12 C 1.53193 * 108.77634 * 233.58352 * 11 10 8 13 13 C 1.53033 * 109.31069 * 305.36309 * 12 11 10 14 14 C 1.53045 * 109.54200 * 61.36579 * 13 12 11 15 15 H 1.09003 * 109.49487 * 58.61514 * 14 13 12 16 16 C 1.50697 * 109.49980 * 178.68088 * 14 13 12 17 17 H 1.07998 * 120.00511 * 0.02562 * 16 14 13 18 18 C 1.37876 * 119.99639 * 179.97438 * 16 14 13 19 19 N 1.31514 * 120.00154 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 119.99908 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47429 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47460 * 120.00443 * 20 18 16 23 23 H 1.48506 * 109.47492 * 240.00388 * 20 18 16 24 24 C 1.46921 * 120.63205 * 186.80130 * 10 8 6 25 25 S 1.81404 * 109.46983 * 119.99811 * 2 1 3 26 26 N 1.65600 * 104.44862 * 305.00066 * 25 2 1 27 27 O 1.42096 * 110.54472 * 193.37646 * 25 2 1 28 28 O 1.42104 * 110.54353 * 56.62455 * 25 2 1 29 29 H 1.08995 * 109.47683 * 300.00204 * 1 2 3 30 30 H 1.08999 * 109.47235 * 60.00352 * 1 2 3 31 31 H 1.09003 * 109.47229 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47552 * 300.00166 * 4 2 1 33 33 H 1.08997 * 109.46895 * 60.00388 * 4 2 1 34 34 H 0.97001 * 120.00158 * 359.97438 * 5 4 2 35 35 H 1.09000 * 109.58506 * 353.37027 * 11 10 8 36 36 H 1.09002 * 109.58731 * 113.64965 * 11 10 8 37 37 H 1.08999 * 109.49546 * 65.31484 * 12 11 10 38 38 H 1.08997 * 109.49501 * 185.40968 * 12 11 10 39 39 H 1.09000 * 109.46358 * 181.38627 * 13 12 11 40 40 H 1.09004 * 109.46673 * 301.35707 * 13 12 11 41 41 H 0.97005 * 119.99941 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.59065 * 246.20951 * 24 10 8 43 43 H 1.09005 * 109.58511 * 6.63121 * 24 10 8 44 44 H 0.96998 * 120.00261 * 0.02562 * 26 25 2 45 45 H 0.96999 * 119.99859 * 179.72108 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5050 -0.7218 -1.2488 6 6 4.1789 -1.3051 -2.2598 7 8 3.5722 -1.8303 -3.1701 8 6 5.6734 -1.3061 -2.2591 9 8 6.2800 -0.8865 -1.2956 10 7 6.3474 -1.7732 -3.3288 11 6 5.6355 -2.1396 -4.5607 12 6 6.0184 -3.5726 -4.9438 13 6 7.5418 -3.6801 -5.0426 14 6 8.1668 -3.3604 -3.6827 15 1 7.7821 -4.0526 -2.9337 16 6 9.6648 -3.4981 -3.7727 17 1 10.1257 -3.7846 -4.7064 18 6 10.4470 -3.2572 -2.6631 19 7 9.8859 -2.9078 -1.5262 20 14 12.3039 -3.4272 -2.7748 21 1 12.6824 -3.8276 -4.1538 22 1 12.9408 -2.1269 -2.4450 23 1 12.7650 -4.4618 -1.8144 24 6 7.8087 -1.9197 -3.2872 25 16 2.1346 -0.8551 1.4812 26 7 1.4051 -0.0655 2.7409 27 8 3.5213 -0.6079 1.6686 28 8 1.6106 -2.1745 1.5441 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6767 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1391 34 1 3.9900 -0.3017 -0.5214 35 1 4.5602 -2.0814 -4.3923 36 1 5.9173 -1.4570 -5.3624 37 1 5.6536 -4.2625 -4.1828 38 1 5.5728 -3.8232 -5.9064 39 1 7.8159 -4.6926 -5.3391 40 1 7.9085 -2.9723 -5.7860 41 1 10.4362 -2.7387 -0.7455 42 1 8.2662 -1.2211 -3.9878 43 1 8.1678 -1.7163 -2.2783 44 1 0.8067 0.6776 2.5661 45 1 1.5728 -0.3490 3.6532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261602800.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:04:23 Heat of formation + Delta-G solvation = -128.017644 kcal Electronic energy + Delta-G solvation = -29663.316343 eV Core-core repulsion = 25422.696063 eV Total energy + Delta-G solvation = -4240.620279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.61444 -38.48281 -37.37380 -36.92921 -36.45209 -36.20716 -33.99997 -33.31026 -32.79172 -31.68977 -29.70243 -27.60959 -25.50860 -24.92740 -23.45124 -22.31554 -21.76986 -20.36020 -19.70638 -18.83152 -18.27258 -17.84907 -17.19987 -16.89123 -16.46205 -16.20704 -15.89488 -15.51781 -15.40053 -14.98178 -14.53446 -14.25323 -13.89138 -13.75979 -13.68793 -13.30287 -13.11013 -12.94667 -12.72322 -12.56689 -12.43613 -12.37690 -12.24473 -12.11848 -12.05110 -11.75573 -11.40100 -10.96870 -10.92046 -10.83211 -10.66245 -10.42739 -10.25329 -10.04213 -9.86118 -9.53265 -9.18759 -9.08574 -8.54131 -8.40031 -7.79952 -5.98017 -4.06405 -0.23253 1.70606 2.42910 2.47244 3.21263 3.32362 3.40629 3.43879 3.58740 3.65588 3.70215 3.96295 4.34024 4.44055 4.45207 4.66519 4.80071 4.87873 5.09711 5.19193 5.32343 5.35546 5.58175 5.60567 5.71140 5.79678 6.01545 6.25993 6.41512 6.56614 6.60475 6.62542 6.75703 6.86968 6.97843 7.02498 7.14619 7.19823 7.61767 7.82329 7.90985 7.98486 8.16677 8.38094 8.58711 8.97864 9.59121 11.07667 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.002850 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.874768 B = 9821.914284 C =11057.707949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.604 4.604 3 H 0.150 0.850 4 C 0.131 3.869 5 N -0.728 5.728 6 C 0.519 3.481 7 O -0.507 6.507 8 C 0.492 3.508 9 O -0.513 6.513 10 N -0.567 5.567 11 C 0.050 3.950 12 C -0.128 4.128 13 C -0.113 4.113 14 C 0.040 3.960 15 H 0.030 0.970 16 C -0.519 4.519 17 H 0.060 0.940 18 C 0.061 3.939 19 N -0.881 5.881 20 Si 0.894 3.106 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.108 3.892 25 S 2.606 3.394 26 N -1.250 6.250 27 O -0.943 6.943 28 O -0.950 6.950 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.421 0.579 35 H 0.142 0.858 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.264 0.736 42 H 0.049 0.951 43 H 0.123 0.877 44 H 0.410 0.590 45 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.272 9.745 3.891 25.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.713 4.713 3 H 0.168 0.832 4 C 0.006 3.994 5 N -0.387 5.387 6 C 0.302 3.698 7 O -0.383 6.383 8 C 0.273 3.727 9 O -0.390 6.390 10 N -0.299 5.299 11 C -0.072 4.072 12 C -0.166 4.166 13 C -0.151 4.151 14 C 0.021 3.979 15 H 0.049 0.951 16 C -0.558 4.558 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.519 5.519 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.011 4.011 25 S 2.695 3.305 26 N -0.925 5.925 27 O -0.932 6.932 28 O -0.939 6.939 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.261 0.739 35 H 0.158 0.842 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.141 0.859 44 H 0.237 0.763 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -22.590 8.792 3.847 24.544 hybrid contribution 0.759 0.916 0.302 1.227 sum -21.832 9.709 4.150 24.251 Atomic orbital electron populations 1.21595 0.88194 1.05008 1.04837 1.30509 1.08346 1.14722 1.17743 0.83186 1.21206 0.79987 1.01885 0.96359 1.46237 1.06649 1.58840 1.26964 1.20905 0.89966 0.77549 0.81397 1.90317 1.70057 1.43951 1.34007 1.19639 0.86711 0.81559 0.84803 1.90808 1.68803 1.45617 1.33756 1.48447 1.10088 1.59427 1.11944 1.23064 1.02242 0.96054 0.85810 1.21858 0.98138 0.96232 1.00367 1.21666 0.92818 1.00445 1.00149 1.19064 0.95356 0.91819 0.91659 0.95141 1.21121 0.90715 1.47274 0.96640 0.92209 1.25073 0.98794 0.94891 0.95377 1.69888 1.35265 1.45878 1.00830 0.86514 0.85604 0.77710 0.78028 1.19810 1.20979 1.21009 1.22602 0.73130 0.99552 1.05837 1.05308 0.74738 0.74897 0.75510 1.53176 1.65702 1.50454 1.23149 1.93682 1.30909 1.85104 1.83500 1.93626 1.80121 1.35140 1.85035 0.90717 0.89431 0.89820 0.88761 0.88043 0.73912 0.84180 0.92646 0.92265 0.92269 0.93058 0.93251 0.92630 0.93274 0.85887 0.76316 0.74858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.42 9.06 37.16 0.34 -0.08 16 2 C -0.60 -3.46 3.08 -26.73 -0.08 -3.54 16 3 H 0.15 0.48 8.14 -51.93 -0.42 0.06 16 4 C 0.13 1.19 5.12 -4.05 -0.02 1.17 16 5 N -0.73 -9.90 5.25 -60.73 -0.32 -10.22 16 6 C 0.52 8.86 7.78 -11.59 -0.09 8.77 16 7 O -0.51 -8.58 13.10 5.50 0.07 -8.50 16 8 C 0.49 10.43 7.74 -11.59 -0.09 10.34 16 9 O -0.51 -12.40 15.94 5.50 0.09 -12.31 16 10 N -0.57 -12.19 2.97 -173.01 -0.51 -12.70 16 11 C 0.05 0.90 6.27 -3.71 -0.02 0.88 16 12 C -0.13 -2.32 6.08 -26.61 -0.16 -2.48 16 13 C -0.11 -2.38 5.10 -26.69 -0.14 -2.51 16 14 C 0.04 1.02 2.26 -91.42 -0.21 0.82 16 15 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 16 C -0.52 -14.29 8.56 -34.44 -0.29 -14.58 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.88 -25.98 11.41 55.43 0.63 -25.35 16 20 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.11 2.70 5.41 -3.49 -0.02 2.68 16 25 S 2.61 24.09 5.10 -107.50 -0.55 23.54 16 26 N -1.25 -6.03 9.26 60.35 0.56 -5.47 16 27 O -0.94 -13.12 16.40 -57.54 -0.94 -14.07 16 28 O -0.95 -12.22 18.09 -57.54 -1.04 -13.26 16 29 H 0.07 0.04 6.87 -51.93 -0.36 -0.32 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.42 5.92 6.10 -40.82 -0.25 5.67 16 35 H 0.14 2.43 3.78 -56.75 -0.21 2.21 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.12 3.51 5.20 -51.93 -0.27 3.24 16 44 H 0.41 0.54 7.59 -34.47 -0.26 0.27 16 45 H 0.42 1.81 8.96 -34.47 -0.31 1.50 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -37.95 372.40 -8.58 -46.53 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.28 Total: 6.61 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -0.88 Total: 3.08 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.36 Total: -53.74 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -1.82 Total: -48.14 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 24.09 SS G_CDS: -0.55 Total: 23.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.95 -8.58 -46.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261602800.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.489 kcal (2) G-P(sol) polarization free energy of solvation -37.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds