Wall clock time and date at job start Wed Apr 1 2020 07:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47567 * 2 1 4 4 C 1.52996 * 109.47311 * 239.99641 * 2 1 3 5 5 N 1.46497 * 109.47277 * 180.02562 * 4 2 1 6 6 C 1.34777 * 120.00299 * 180.02562 * 5 4 2 7 7 O 1.21352 * 120.00085 * 359.97438 * 6 5 4 8 8 C 1.49449 * 120.00125 * 180.02562 * 6 5 4 9 9 O 1.21349 * 120.00092 * 6.39611 * 8 6 5 10 10 N 1.34778 * 119.99942 * 186.39413 * 8 6 5 11 11 C 1.46926 * 120.63148 * 7.08744 * 10 8 6 12 12 C 1.53193 * 108.77634 * 233.58352 * 11 10 8 13 13 C 1.53033 * 109.31069 * 305.36309 * 12 11 10 14 14 C 1.53045 * 109.54200 * 61.36579 * 13 12 11 15 15 H 1.09003 * 109.49487 * 58.61514 * 14 13 12 16 16 C 1.50697 * 109.49980 * 178.68088 * 14 13 12 17 17 H 1.07998 * 120.00511 * 0.02562 * 16 14 13 18 18 C 1.37876 * 119.99639 * 179.97438 * 16 14 13 19 19 N 1.31514 * 120.00154 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 119.99908 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47429 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47460 * 120.00443 * 20 18 16 23 23 H 1.48506 * 109.47492 * 240.00388 * 20 18 16 24 24 C 1.46921 * 120.63205 * 186.80130 * 10 8 6 25 25 S 1.81404 * 109.46983 * 119.99811 * 2 1 3 26 26 N 1.65600 * 104.44862 * 305.00066 * 25 2 1 27 27 O 1.42096 * 110.54472 * 193.37646 * 25 2 1 28 28 O 1.42104 * 110.54353 * 56.62455 * 25 2 1 29 29 H 1.08995 * 109.47683 * 300.00204 * 1 2 3 30 30 H 1.08999 * 109.47235 * 60.00352 * 1 2 3 31 31 H 1.09003 * 109.47229 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47552 * 300.00166 * 4 2 1 33 33 H 1.08997 * 109.46895 * 60.00388 * 4 2 1 34 34 H 0.97001 * 120.00158 * 359.97438 * 5 4 2 35 35 H 1.09000 * 109.58506 * 353.37027 * 11 10 8 36 36 H 1.09002 * 109.58731 * 113.64965 * 11 10 8 37 37 H 1.08999 * 109.49546 * 65.31484 * 12 11 10 38 38 H 1.08997 * 109.49501 * 185.40968 * 12 11 10 39 39 H 1.09000 * 109.46358 * 181.38627 * 13 12 11 40 40 H 1.09004 * 109.46673 * 301.35707 * 13 12 11 41 41 H 0.97005 * 119.99941 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.59065 * 246.20951 * 24 10 8 43 43 H 1.09005 * 109.58511 * 6.63121 * 24 10 8 44 44 H 0.96998 * 120.00261 * 0.02562 * 26 25 2 45 45 H 0.96999 * 119.99859 * 179.72108 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5050 -0.7218 -1.2488 6 6 4.1789 -1.3051 -2.2598 7 8 3.5722 -1.8303 -3.1701 8 6 5.6734 -1.3061 -2.2591 9 8 6.2800 -0.8865 -1.2956 10 7 6.3474 -1.7732 -3.3288 11 6 5.6355 -2.1396 -4.5607 12 6 6.0184 -3.5726 -4.9438 13 6 7.5418 -3.6801 -5.0426 14 6 8.1668 -3.3604 -3.6827 15 1 7.7821 -4.0526 -2.9337 16 6 9.6648 -3.4981 -3.7727 17 1 10.1257 -3.7846 -4.7064 18 6 10.4470 -3.2572 -2.6631 19 7 9.8859 -2.9078 -1.5262 20 14 12.3039 -3.4272 -2.7748 21 1 12.6824 -3.8276 -4.1538 22 1 12.9408 -2.1269 -2.4450 23 1 12.7650 -4.4618 -1.8144 24 6 7.8087 -1.9197 -3.2872 25 16 2.1346 -0.8551 1.4812 26 7 1.4051 -0.0655 2.7409 27 8 3.5213 -0.6079 1.6686 28 8 1.6106 -2.1745 1.5441 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6767 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1391 34 1 3.9900 -0.3017 -0.5214 35 1 4.5602 -2.0814 -4.3923 36 1 5.9173 -1.4570 -5.3624 37 1 5.6536 -4.2625 -4.1828 38 1 5.5728 -3.8232 -5.9064 39 1 7.8159 -4.6926 -5.3391 40 1 7.9085 -2.9723 -5.7860 41 1 10.4362 -2.7387 -0.7455 42 1 8.2662 -1.2211 -3.9878 43 1 8.1678 -1.7163 -2.2783 44 1 0.8067 0.6776 2.5661 45 1 1.5728 -0.3490 3.6532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261602800.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:04:22 Heat of formation + Delta-G solvation = -161.643719 kcal Electronic energy + Delta-G solvation = -29664.774479 eV Core-core repulsion = 25422.696063 eV Total energy + Delta-G solvation = -4242.078415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.06765 -39.98366 -38.58203 -38.22211 -37.48433 -37.05386 -35.27710 -34.55367 -33.66963 -33.39588 -31.57116 -28.60088 -27.21028 -26.57848 -24.31735 -23.59514 -23.48571 -21.76236 -20.71017 -20.26119 -19.05143 -18.87219 -18.41396 -18.21596 -17.96870 -17.25230 -17.20210 -16.74551 -16.52875 -16.44453 -16.18915 -15.60894 -15.44662 -14.92347 -14.78303 -14.54340 -14.46586 -14.21754 -13.90252 -13.66452 -13.53716 -13.38100 -13.25407 -13.20141 -13.12585 -13.02155 -12.91069 -12.50628 -12.46678 -12.31346 -12.17829 -11.72270 -11.64914 -11.52274 -11.31783 -11.17295 -10.99087 -10.61197 -10.56468 -10.07862 -9.57255 -8.12666 -6.29703 -0.91523 0.22450 1.19386 1.40798 1.41612 1.54092 1.82054 2.04765 2.38324 2.44392 2.56574 3.07943 3.12253 3.17757 3.29703 3.74125 3.92913 4.13716 4.18650 4.32417 4.35490 4.46785 4.56296 4.63803 4.66605 4.73545 4.78976 4.80784 5.04796 5.11061 5.15970 5.23074 5.23490 5.31129 5.35234 5.47598 5.55781 5.72795 5.84036 5.92934 6.26581 6.34066 6.37580 6.57923 6.81507 6.92052 7.40495 8.91629 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.002850 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.874768 B = 9821.914284 C =11057.707949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.570 4.570 3 H 0.186 0.814 4 C 0.115 3.885 5 N -0.718 5.718 6 C 0.526 3.474 7 O -0.504 6.504 8 C 0.479 3.521 9 O -0.556 6.556 10 N -0.573 5.573 11 C 0.048 3.952 12 C -0.121 4.121 13 C -0.106 4.106 14 C 0.038 3.962 15 H -0.013 1.013 16 C -0.533 4.533 17 H 0.064 0.936 18 C 0.008 3.992 19 N -0.917 5.917 20 Si 0.962 3.038 21 H -0.260 1.260 22 H -0.281 1.281 23 H -0.283 1.283 24 C 0.120 3.880 25 S 2.594 3.406 26 N -1.231 6.231 27 O -1.003 7.003 28 O -0.998 6.998 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.419 0.581 35 H 0.157 0.843 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.101 0.899 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.261 0.739 42 H 0.049 0.951 43 H 0.081 0.919 44 H 0.429 0.571 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.744 11.143 2.083 28.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.684 4.684 3 H 0.203 0.797 4 C -0.009 4.009 5 N -0.375 5.375 6 C 0.308 3.692 7 O -0.382 6.382 8 C 0.261 3.739 9 O -0.435 6.435 10 N -0.304 5.304 11 C -0.072 4.072 12 C -0.159 4.159 13 C -0.144 4.144 14 C 0.018 3.982 15 H 0.005 0.995 16 C -0.572 4.572 17 H 0.083 0.917 18 C -0.191 4.191 19 N -0.555 5.555 20 Si 0.787 3.213 21 H -0.184 1.184 22 H -0.207 1.207 23 H -0.209 1.209 24 C -0.001 4.001 25 S 2.688 3.312 26 N -0.911 5.911 27 O -0.992 6.992 28 O -0.987 6.987 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.151 0.849 34 H 0.258 0.742 35 H 0.173 0.827 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.119 0.881 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.100 0.900 44 H 0.260 0.740 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -25.111 10.178 2.056 27.173 hybrid contribution 1.409 0.532 0.880 1.744 sum -23.703 10.709 2.936 26.175 Atomic orbital electron populations 1.21822 0.85269 1.05561 1.07603 1.30290 1.10384 1.15037 1.12645 0.79704 1.21716 0.76822 1.03056 0.99257 1.46299 1.08729 1.57048 1.25380 1.19937 0.87791 0.78774 0.82699 1.90287 1.69172 1.44427 1.34271 1.20480 0.89051 0.80461 0.83902 1.90777 1.70338 1.47277 1.35098 1.48489 1.08995 1.59451 1.13513 1.23354 1.02689 0.96383 0.84764 1.21835 0.95950 0.96007 1.02145 1.21560 0.94781 1.00772 0.97292 1.19006 0.94839 0.91140 0.93181 0.99497 1.21514 0.92080 1.46811 0.96768 0.91734 1.25934 1.03625 0.94564 0.94979 1.70082 1.36856 1.47070 1.01533 0.85445 0.79787 0.77576 0.78476 1.18405 1.20687 1.20923 1.22066 0.75724 0.99101 1.03247 1.05187 0.73925 0.74871 0.77222 1.52688 1.65473 1.50651 1.22249 1.93626 1.34741 1.85815 1.84997 1.93574 1.80345 1.38501 1.86256 0.87619 0.87047 0.90495 0.88872 0.84912 0.74179 0.82709 0.90579 0.93717 0.88054 0.92781 0.92169 0.93006 0.93310 0.90038 0.74029 0.74368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.25 9.06 71.98 0.65 0.40 16 2 C -0.57 -4.80 3.08 30.59 0.09 -4.71 16 3 H 0.19 0.37 8.14 -2.39 -0.02 0.35 16 4 C 0.11 1.78 5.12 86.38 0.44 2.23 16 5 N -0.72 -18.94 5.25 -464.42 -2.44 -21.37 16 6 C 0.53 17.76 7.78 87.27 0.68 18.44 16 7 O -0.50 -16.16 13.10 -3.25 -0.04 -16.21 16 8 C 0.48 20.95 7.74 87.27 0.68 21.63 16 9 O -0.56 -28.47 15.94 -3.24 -0.05 -28.53 16 10 N -0.57 -25.14 2.97 -819.63 -2.43 -27.57 16 11 C 0.05 1.66 6.27 86.36 0.54 2.21 16 12 C -0.12 -4.20 6.08 30.67 0.19 -4.01 16 13 C -0.11 -4.40 5.10 30.62 0.16 -4.24 16 14 C 0.04 1.98 2.26 -11.31 -0.03 1.95 16 15 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 16 C -0.53 -30.04 8.56 25.60 0.22 -29.82 16 17 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 18 C 0.01 0.48 5.30 84.65 0.45 0.92 16 19 N -0.92 -56.74 11.41 21.45 0.24 -56.49 16 20 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 C 0.12 6.24 5.41 86.51 0.47 6.71 16 25 S 2.59 47.11 5.10 -56.49 -0.29 46.82 16 26 N -1.23 -10.09 9.26 37.02 0.34 -9.74 16 27 O -1.00 -29.23 16.40 -127.65 -2.09 -31.33 16 28 O -1.00 -26.28 18.09 -127.65 -2.31 -28.59 16 29 H 0.11 -0.42 6.87 -2.39 -0.02 -0.44 16 30 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.42 11.88 6.10 -92.71 -0.57 11.31 16 35 H 0.16 5.00 3.78 -78.77 -0.30 4.71 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 41 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 42 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.08 4.96 5.20 -2.38 -0.01 4.95 16 44 H 0.43 -0.14 7.59 -96.75 -0.73 -0.87 16 45 H 0.43 3.32 8.96 -96.75 -0.87 2.46 16 Total: -1.00 -89.40 372.40 -3.90 -93.30 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -1.40 Total: 20.92 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 4.54 Total: 11.70 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -4.28 Total: -115.18 kcal Atomic # 8 Polarization: -100.16 SS G_CDS: -4.50 Total: -104.65 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 47.11 SS G_CDS: -0.29 Total: 46.82 kcal Total: -89.40 -3.90 -93.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261602800.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.339 kcal (2) G-P(sol) polarization free energy of solvation -89.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds