Wall clock time and date at job start Wed Apr 1 2020 06:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.46975 * 175.00015 * 4 2 1 6 6 N 1.46500 * 109.47010 * 180.02562 * 5 4 2 7 7 C 1.34778 * 120.00337 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99403 * 359.97438 * 7 6 5 9 9 C 1.50690 * 120.00159 * 179.97438 * 7 6 5 10 10 C 1.53044 * 113.15420 * 280.37019 * 9 7 6 11 11 S 1.81428 * 89.89276 * 211.85518 * 10 9 7 12 12 O 1.42099 * 112.75008 * 280.47490 * 11 10 9 13 13 O 1.42099 * 112.75550 * 136.72696 * 11 10 9 14 14 C 1.53049 * 113.15243 * 179.97438 * 9 7 6 15 15 N 1.46906 * 109.47160 * 120.00121 * 2 1 3 16 16 C 1.46898 * 110.99888 * 275.00077 * 15 2 1 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 2 18 18 O 1.21288 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99549 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99229 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00207 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00252 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00305 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47102 * 89.99542 * 24 22 20 26 26 H 1.48493 * 109.47421 * 209.99846 * 24 22 20 27 27 H 1.48497 * 109.46772 * 330.00472 * 24 22 20 28 28 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 29 29 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 31 31 H 1.08995 * 109.46869 * 294.99887 * 4 2 1 32 32 H 1.09000 * 109.46715 * 55.00379 * 4 2 1 33 33 H 1.09002 * 109.47050 * 299.99956 * 5 4 2 34 34 H 1.09000 * 109.47076 * 60.00044 * 5 4 2 35 35 H 0.97001 * 120.00192 * 359.97438 * 6 5 4 36 36 H 1.09004 * 112.49602 * 50.21259 * 9 7 6 37 37 H 1.08998 * 113.14624 * 327.11367 * 10 9 7 38 38 H 1.08997 * 113.14940 * 96.59100 * 10 9 7 39 39 H 1.09005 * 113.14850 * 263.40950 * 14 9 7 40 40 H 1.09003 * 113.14569 * 32.89047 * 14 9 7 41 41 H 1.00902 * 110.99923 * 38.96018 * 15 2 1 42 42 H 1.08995 * 109.47296 * 299.99911 * 16 15 2 43 43 H 1.08997 * 109.47334 * 60.00212 * 16 15 2 44 44 H 0.97003 * 120.00664 * 0.02562 * 19 17 16 45 45 H 0.97002 * 120.00635 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3033 -2.5102 7 6 5.3741 -1.3395 -2.7754 8 8 6.1584 -0.8003 -2.0238 9 6 5.8763 -2.0498 -4.0058 10 6 5.9523 -3.5688 -3.8350 11 16 7.3769 -3.6204 -4.9573 12 8 7.0009 -3.5521 -6.3259 13 8 8.4115 -4.4767 -4.4931 14 6 7.3986 -1.9935 -4.1539 15 7 2.0197 -0.6925 1.1995 16 6 2.0824 0.2225 2.3469 17 6 2.5885 -0.5217 3.5557 18 8 2.8688 -1.6986 3.4698 19 7 2.7296 0.1206 4.7321 20 6 3.1895 -0.5565 5.8320 21 1 3.4391 -1.6045 5.7555 22 6 3.3355 0.1058 7.0447 23 7 3.7768 -0.5430 8.0988 24 14 2.9045 1.9186 7.1768 25 1 1.4754 2.0614 7.5543 26 1 3.7563 2.5558 8.2129 27 1 3.1390 2.5797 5.8679 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -1.7715 -1.2056 32 1 1.6054 -0.2616 -2.1370 33 1 3.8532 0.4370 -1.3573 34 1 3.9994 -1.0728 -0.4259 35 1 3.4259 -1.7349 -3.1112 36 1 5.3467 -1.7453 -4.9086 37 1 6.1971 -3.8738 -2.8175 38 1 5.0783 -4.0884 -4.2277 39 1 7.7357 -1.1940 -4.8137 40 1 7.9224 -1.9947 -3.1980 41 1 1.4496 -1.4980 1.4100 42 1 2.7588 1.0461 2.1183 43 1 1.0871 0.6162 2.5526 44 1 2.5051 1.0618 4.8009 45 1 3.8784 -0.0808 8.9455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266147192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:40:15 Heat of formation + Delta-G solvation = -115.767390 kcal Electronic energy + Delta-G solvation = -27600.617903 eV Core-core repulsion = 23360.528834 eV Total energy + Delta-G solvation = -4240.089069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -40.30250 -38.69276 -37.84645 -37.37338 -36.63488 -36.16460 -34.98358 -33.95716 -31.81488 -31.47929 -29.16477 -27.17681 -26.54482 -25.26632 -23.79734 -22.63949 -21.13912 -20.29380 -19.38409 -19.32682 -18.39922 -18.09854 -17.03190 -16.78431 -16.28898 -16.07791 -15.95105 -15.80108 -15.44933 -15.18323 -14.84422 -14.56139 -14.10741 -14.06960 -13.72662 -13.41202 -13.33077 -13.15268 -12.85864 -12.74598 -12.72198 -12.42840 -12.40804 -12.24655 -12.14552 -11.95964 -11.69897 -11.52106 -11.43671 -11.35201 -11.16879 -10.99958 -10.88030 -10.60087 -10.07589 -9.97739 -9.57608 -9.26100 -8.61231 -8.20557 -8.14876 -6.31154 -3.82629 -0.39349 1.42427 2.29047 2.81865 3.02493 3.05862 3.14661 3.15071 3.54886 3.60438 3.73612 4.01925 4.03858 4.10355 4.32887 4.53133 4.57709 4.64208 4.79201 4.82120 4.92222 5.03055 5.18328 5.19342 5.21333 5.28062 5.40702 5.43015 5.53504 5.62608 5.66924 5.82003 5.89416 5.95535 6.01065 6.11907 6.23641 7.05838 7.21131 7.53319 7.58039 7.94193 8.14377 8.59426 8.94852 9.42250 9.82305 10.81970 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.001882 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.043698 B =14871.525778 C =16110.532382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 H 0.080 0.920 4 C -0.115 4.115 5 C 0.120 3.880 6 N -0.725 5.725 7 C 0.533 3.467 8 O -0.524 6.524 9 C -0.096 4.096 10 C -0.594 4.594 11 S 2.417 3.583 12 O -0.913 6.913 13 O -0.918 6.918 14 C -0.580 4.580 15 N -0.663 5.663 16 C 0.048 3.952 17 C 0.450 3.550 18 O -0.565 6.565 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.399 0.601 36 H 0.135 0.865 37 H 0.151 0.849 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.157 0.843 41 H 0.352 0.648 42 H 0.087 0.913 43 H 0.045 0.955 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 0.891 -29.189 29.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.027 4.027 3 H 0.098 0.902 4 C -0.154 4.154 5 C -0.003 4.003 6 N -0.377 5.377 7 C 0.316 3.684 8 O -0.399 6.399 9 C -0.120 4.120 10 C -0.722 4.722 11 S 2.597 3.403 12 O -0.910 6.910 13 O -0.915 6.915 14 C -0.709 4.709 15 N -0.295 5.295 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.447 6.447 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.232 0.768 36 H 0.152 0.848 37 H 0.169 0.831 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.175 0.825 41 H 0.172 0.828 42 H 0.105 0.895 43 H 0.063 0.937 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.583 -0.143 -29.391 29.397 hybrid contribution -2.291 2.171 1.081 3.336 sum -2.874 2.028 -28.310 28.527 Atomic orbital electron populations 1.22516 0.97056 1.02393 1.02242 1.21510 0.92501 0.98144 0.90510 0.90199 1.21750 0.94452 1.01820 0.97368 1.21452 0.93984 0.97253 0.87583 1.46001 1.07076 1.57002 1.27586 1.19652 0.82545 0.80176 0.86015 1.90769 1.55268 1.45014 1.48888 1.21591 0.95875 0.94020 1.00500 1.30989 1.22342 1.00142 1.18737 1.08260 0.77567 0.78591 0.75849 1.93727 1.82834 1.85913 1.28512 1.93674 1.52644 1.62558 1.82645 1.30895 1.00501 1.23974 1.15497 1.60198 1.57714 1.09108 1.02523 1.21735 0.99916 0.95867 0.90989 1.19714 0.84766 0.88265 0.83733 1.90565 1.53846 1.16044 1.84207 1.42213 1.60150 1.11052 1.09602 1.19427 1.40315 0.97924 0.85666 0.86295 1.25044 0.97488 0.98411 0.95278 1.69619 1.45052 1.36610 1.00832 0.86666 0.79207 0.84975 0.78506 1.19697 1.20152 1.19474 0.92161 0.92200 0.92357 0.91007 0.91418 0.91847 0.89069 0.76760 0.84750 0.83087 0.84847 0.85174 0.82540 0.82825 0.89498 0.93725 0.79718 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 9.16 37.16 0.34 -1.18 16 2 C 0.08 0.82 2.59 -67.71 -0.18 0.65 16 3 H 0.08 0.77 7.80 -51.93 -0.40 0.36 16 4 C -0.12 -0.92 5.01 -26.73 -0.13 -1.06 16 5 C 0.12 1.24 5.56 -4.04 -0.02 1.22 16 6 N -0.73 -5.92 5.56 -60.30 -0.33 -6.25 16 7 C 0.53 5.29 7.33 -10.99 -0.08 5.21 16 8 O -0.52 -7.76 15.94 5.56 0.09 -7.68 16 9 C -0.10 -0.54 3.82 -91.73 -0.35 -0.89 16 10 C -0.59 -2.45 7.48 37.18 0.28 -2.17 16 11 S 2.42 11.94 7.55 -107.50 -0.81 11.13 16 12 O -0.91 -6.81 18.18 -57.30 -1.04 -7.85 16 13 O -0.92 -8.32 18.18 -57.30 -1.04 -9.36 16 14 C -0.58 -3.13 7.18 37.18 0.27 -2.86 16 15 N -0.66 -9.27 5.33 -107.99 -0.58 -9.85 16 16 C 0.05 0.75 5.97 -4.97 -0.03 0.72 16 17 C 0.45 10.07 7.82 -10.98 -0.09 9.99 16 18 O -0.56 -15.03 15.78 5.55 0.09 -14.94 16 19 N -0.59 -14.04 5.09 -10.96 -0.06 -14.09 16 20 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 21 H 0.12 3.86 7.39 -52.48 -0.39 3.48 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.86 13.96 55.50 0.77 -25.09 16 24 Si 0.88 19.41 27.74 -169.99 -4.71 14.69 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 27 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.06 0.53 7.45 -51.93 -0.39 0.14 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.29 7.75 -51.93 -0.40 0.89 16 35 H 0.40 1.87 8.47 -40.82 -0.35 1.52 16 36 H 0.13 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.15 0.74 8.11 -51.93 -0.42 0.32 16 38 H 0.13 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.16 1.07 7.57 -51.93 -0.39 0.68 16 41 H 0.35 5.17 8.17 -39.29 -0.32 4.84 16 42 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 43 H 0.04 0.61 7.44 -51.93 -0.39 0.22 16 44 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 389.01 15.07 5.86 5.86 Total: -1.00 -41.06 389.01 -8.66 -49.71 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -6.65 Total: 11.84 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -0.24 Total: 1.87 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.19 Total: -55.28 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -1.91 Total: -39.83 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.69 kcal Atomic # 16 Polarization: 11.94 SS G_CDS: -0.81 Total: 11.13 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -41.06 -8.66 -49.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266147192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.054 kcal (2) G-P(sol) polarization free energy of solvation -41.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds