Wall clock time and date at job start Wed Apr 1 2020 06:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.46975 * 175.00015 * 4 2 1 6 6 N 1.46500 * 109.47010 * 180.02562 * 5 4 2 7 7 C 1.34778 * 120.00337 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99403 * 359.97438 * 7 6 5 9 9 C 1.50690 * 120.00159 * 179.97438 * 7 6 5 10 10 C 1.53044 * 113.15420 * 280.37019 * 9 7 6 11 11 S 1.81428 * 89.89276 * 211.85518 * 10 9 7 12 12 O 1.42099 * 112.75008 * 280.47490 * 11 10 9 13 13 O 1.42099 * 112.75550 * 136.72696 * 11 10 9 14 14 C 1.53049 * 113.15243 * 179.97438 * 9 7 6 15 15 N 1.46906 * 109.47160 * 120.00121 * 2 1 3 16 16 C 1.46898 * 110.99888 * 275.00077 * 15 2 1 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 2 18 18 O 1.21288 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99549 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99229 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00207 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00252 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00305 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47102 * 89.99542 * 24 22 20 26 26 H 1.48493 * 109.47421 * 209.99846 * 24 22 20 27 27 H 1.48497 * 109.46772 * 330.00472 * 24 22 20 28 28 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 29 29 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 31 31 H 1.08995 * 109.46869 * 294.99887 * 4 2 1 32 32 H 1.09000 * 109.46715 * 55.00379 * 4 2 1 33 33 H 1.09002 * 109.47050 * 299.99956 * 5 4 2 34 34 H 1.09000 * 109.47076 * 60.00044 * 5 4 2 35 35 H 0.97001 * 120.00192 * 359.97438 * 6 5 4 36 36 H 1.09004 * 112.49602 * 50.21259 * 9 7 6 37 37 H 1.08998 * 113.14624 * 327.11367 * 10 9 7 38 38 H 1.08997 * 113.14940 * 96.59100 * 10 9 7 39 39 H 1.09005 * 113.14850 * 263.40950 * 14 9 7 40 40 H 1.09003 * 113.14569 * 32.89047 * 14 9 7 41 41 H 1.00902 * 110.99923 * 38.96018 * 15 2 1 42 42 H 1.08995 * 109.47296 * 299.99911 * 16 15 2 43 43 H 1.08997 * 109.47334 * 60.00212 * 16 15 2 44 44 H 0.97003 * 120.00664 * 0.02562 * 19 17 16 45 45 H 0.97002 * 120.00635 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3033 -2.5102 7 6 5.3741 -1.3395 -2.7754 8 8 6.1584 -0.8003 -2.0238 9 6 5.8763 -2.0498 -4.0058 10 6 5.9523 -3.5688 -3.8350 11 16 7.3769 -3.6204 -4.9573 12 8 7.0009 -3.5521 -6.3259 13 8 8.4115 -4.4767 -4.4931 14 6 7.3986 -1.9935 -4.1539 15 7 2.0197 -0.6925 1.1995 16 6 2.0824 0.2225 2.3469 17 6 2.5885 -0.5217 3.5557 18 8 2.8688 -1.6986 3.4698 19 7 2.7296 0.1206 4.7321 20 6 3.1895 -0.5565 5.8320 21 1 3.4391 -1.6045 5.7555 22 6 3.3355 0.1058 7.0447 23 7 3.7768 -0.5430 8.0988 24 14 2.9045 1.9186 7.1768 25 1 1.4754 2.0614 7.5543 26 1 3.7563 2.5558 8.2129 27 1 3.1390 2.5797 5.8679 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -1.7715 -1.2056 32 1 1.6054 -0.2616 -2.1370 33 1 3.8532 0.4370 -1.3573 34 1 3.9994 -1.0728 -0.4259 35 1 3.4259 -1.7349 -3.1112 36 1 5.3467 -1.7453 -4.9086 37 1 6.1971 -3.8738 -2.8175 38 1 5.0783 -4.0884 -4.2277 39 1 7.7357 -1.1940 -4.8137 40 1 7.9224 -1.9947 -3.1980 41 1 1.4496 -1.4980 1.4100 42 1 2.7588 1.0461 2.1183 43 1 1.0871 0.6162 2.5526 44 1 2.5051 1.0618 4.8009 45 1 3.8784 -0.0808 8.9455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266147192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:40:14 Heat of formation + Delta-G solvation = -154.095619 kcal Electronic energy + Delta-G solvation = -27602.279940 eV Core-core repulsion = 23360.528834 eV Total energy + Delta-G solvation = -4241.751105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.05256 -40.35891 -38.47348 -38.34977 -37.21903 -36.75534 -36.09962 -35.75354 -33.77640 -32.63597 -29.94296 -28.08276 -27.58053 -26.03090 -25.37140 -23.38793 -21.92288 -21.33596 -20.98268 -20.26358 -19.78795 -18.77061 -17.72373 -17.57140 -17.21529 -17.03237 -16.90447 -16.69281 -16.54695 -16.34202 -16.07587 -15.66660 -15.21670 -14.98068 -14.80427 -14.54883 -14.43209 -14.22762 -14.02493 -13.87840 -13.57845 -13.33985 -13.31501 -13.14592 -12.91759 -12.86514 -12.67067 -12.58677 -12.43310 -12.20794 -12.14702 -12.03053 -11.98777 -11.71477 -11.52183 -11.33874 -10.87334 -10.44352 -10.26169 -10.08034 -9.24711 -8.42583 -6.03567 -0.85419 0.99115 1.28879 1.34014 1.43312 1.57075 1.95084 2.16532 2.21734 2.72286 2.74279 3.07272 3.13909 3.15587 3.44771 3.54606 3.88871 3.93599 4.01727 4.12707 4.17041 4.27232 4.32467 4.42165 4.48581 4.51214 4.57710 4.59148 4.77469 4.83073 4.92221 4.97702 5.05372 5.21338 5.26777 5.34394 5.49320 5.52066 5.90940 6.10721 6.45274 6.56524 6.58739 6.86944 7.25857 7.38685 7.95580 8.75160 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.001882 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.043698 B =14871.525778 C =16110.532382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.083 3.917 3 H 0.087 0.913 4 C -0.104 4.104 5 C 0.124 3.876 6 N -0.711 5.711 7 C 0.525 3.475 8 O -0.583 6.583 9 C -0.095 4.095 10 C -0.583 4.583 11 S 2.459 3.541 12 O -0.931 6.931 13 O -0.962 6.962 14 C -0.587 4.587 15 N -0.682 5.682 16 C 0.063 3.937 17 C 0.447 3.553 18 O -0.615 6.615 19 N -0.592 5.592 20 C -0.329 4.329 21 H 0.054 0.946 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.966 3.034 25 H -0.254 1.254 26 H -0.276 1.276 27 H -0.233 1.233 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.419 0.581 36 H 0.176 0.824 37 H 0.142 0.858 38 H 0.168 0.832 39 H 0.147 0.853 40 H 0.137 0.863 41 H 0.345 0.655 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.389 0.611 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.279 3.646 -32.157 32.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.027 4.027 3 H 0.105 0.895 4 C -0.142 4.142 5 C 0.000 4.000 6 N -0.363 5.363 7 C 0.310 3.690 8 O -0.463 6.463 9 C -0.118 4.118 10 C -0.713 4.713 11 S 2.641 3.359 12 O -0.928 6.928 13 O -0.959 6.959 14 C -0.716 4.716 15 N -0.315 5.315 16 C -0.069 4.069 17 C 0.235 3.765 18 O -0.499 6.499 19 N -0.234 5.234 20 C -0.458 4.458 21 H 0.072 0.928 22 C -0.216 4.216 23 N -0.575 5.575 24 Si 0.786 3.214 25 H -0.179 1.179 26 H -0.201 1.201 27 H -0.156 1.156 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.257 0.743 36 H 0.193 0.807 37 H 0.160 0.840 38 H 0.186 0.814 39 H 0.166 0.834 40 H 0.156 0.844 41 H 0.164 0.836 42 H 0.126 0.874 43 H 0.096 0.904 44 H 0.225 0.775 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.228 2.600 -32.435 32.699 hybrid contribution -1.473 1.191 1.974 2.735 sum -4.700 3.791 -30.461 31.054 Atomic orbital electron populations 1.22438 0.95351 1.02634 1.03108 1.21655 0.93795 0.98191 0.89023 0.89519 1.21706 0.92332 1.02258 0.97929 1.21244 0.95606 0.96361 0.86771 1.45887 1.07139 1.56240 1.27040 1.20403 0.82507 0.79467 0.86592 1.90746 1.56738 1.47660 1.51116 1.21802 0.95932 0.94249 0.99862 1.30911 1.23000 0.99476 1.17888 1.06991 0.76751 0.77276 0.74870 1.93696 1.83081 1.86074 1.29941 1.93614 1.55005 1.64055 1.83215 1.30943 1.00696 1.25036 1.14943 1.60208 1.58866 1.09243 1.03181 1.21631 1.01596 0.95406 0.88288 1.21086 0.82449 0.87991 0.84969 1.90540 1.55342 1.18787 1.85244 1.42054 1.60651 1.11808 1.08892 1.18999 1.42506 0.95997 0.88297 0.92806 1.26147 0.96427 1.05121 0.93887 1.69806 1.46278 1.39652 1.01804 0.85347 0.79505 0.76381 0.80169 1.17864 1.20073 1.15597 0.89809 0.92313 0.92941 0.90737 0.87894 0.92741 0.93620 0.74326 0.80691 0.83983 0.81352 0.83427 0.84425 0.83604 0.87447 0.90386 0.77502 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 9.16 71.98 0.66 -1.61 16 2 C 0.08 1.38 2.59 44.92 0.12 1.50 16 3 H 0.09 1.36 7.80 -2.39 -0.02 1.34 16 4 C -0.10 -1.36 5.01 30.60 0.15 -1.20 16 5 C 0.12 2.45 5.56 86.38 0.48 2.93 16 6 N -0.71 -10.33 5.56 -463.07 -2.57 -12.90 16 7 C 0.53 10.00 7.33 87.65 0.64 10.64 16 8 O -0.58 -17.87 15.94 -3.03 -0.05 -17.92 16 9 C -0.10 -0.87 3.82 -11.51 -0.04 -0.91 16 10 C -0.58 -3.64 7.48 72.00 0.54 -3.11 16 11 S 2.46 21.81 7.55 -56.49 -0.43 21.39 16 12 O -0.93 -12.14 18.18 -127.88 -2.32 -14.47 16 13 O -0.96 -17.66 18.18 -127.88 -2.32 -19.98 16 14 C -0.59 -5.93 7.18 72.00 0.52 -5.42 16 15 N -0.68 -18.32 5.33 -495.56 -2.64 -20.96 16 16 C 0.06 1.87 5.97 85.56 0.51 2.38 16 17 C 0.45 20.27 7.82 87.66 0.69 20.96 16 18 O -0.61 -34.36 15.78 -3.05 -0.05 -34.41 16 19 N -0.59 -28.25 5.09 -306.99 -1.56 -29.81 16 20 C -0.33 -19.55 10.16 84.04 0.85 -18.70 16 21 H 0.05 3.82 7.39 -2.91 -0.02 3.79 16 22 C -0.02 -0.98 5.50 84.92 0.47 -0.51 16 23 N -0.93 -57.08 13.96 21.66 0.30 -56.78 16 24 Si 0.97 39.18 27.74 68.60 1.90 41.08 16 25 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 26 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 30 H 0.05 0.75 7.45 -2.39 -0.02 0.73 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 1.34 7.75 -2.39 -0.02 1.32 16 35 H 0.42 2.51 8.47 -92.71 -0.79 1.72 16 36 H 0.18 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.14 1.30 8.11 -2.39 -0.02 1.28 16 38 H 0.17 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.15 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.14 2.03 7.57 -2.39 -0.02 2.01 16 41 H 0.34 9.97 8.17 -89.69 -0.73 9.24 16 42 H 0.11 2.80 8.05 -2.39 -0.02 2.78 16 43 H 0.08 1.84 7.44 -2.39 -0.02 1.82 16 44 H 0.39 15.34 5.76 -92.71 -0.53 14.80 16 45 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -98.50 389.01 -5.23 -103.73 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: -1.07 Total: 34.06 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 5.58 Total: 6.96 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -6.47 Total: -120.45 kcal Atomic # 8 Polarization: -82.03 SS G_CDS: -4.75 Total: -86.78 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 1.90 Total: 41.08 kcal Atomic # 16 Polarization: 21.81 SS G_CDS: -0.43 Total: 21.39 kcal Total: -98.50 -5.23 -103.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266147192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.370 kcal (2) G-P(sol) polarization free energy of solvation -98.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds