Wall clock time and date at job start Wed Apr 1 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 N 1.46898 * 109.47206 * 184.99822 * 4 2 1 6 6 C 1.46898 * 110.99995 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47178 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99402 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00138 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00204 * 179.97438 * 9 7 6 11 11 H 1.08001 * 119.99998 * 0.02562 * 10 9 7 12 12 C 1.38951 * 120.00246 * 179.97438 * 10 9 7 13 13 N 1.31415 * 119.99988 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99978 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47102 * 89.99453 * 14 12 10 16 16 H 1.48495 * 109.47310 * 209.99604 * 14 12 10 17 17 H 1.48507 * 109.47322 * 329.99919 * 14 12 10 18 18 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 19 19 C 1.34777 * 119.99525 * 274.99614 * 18 2 1 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 2 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 2 22 22 C 1.53004 * 109.47208 * 180.27843 * 21 19 18 23 23 C 1.53044 * 113.15109 * 275.37353 * 22 21 19 24 24 S 1.81422 * 89.88843 * 211.85079 * 23 22 21 25 25 O 1.42101 * 112.75569 * 280.47179 * 24 23 22 26 26 O 1.42100 * 112.75448 * 136.72867 * 24 23 22 27 27 C 1.53044 * 113.15324 * 174.99879 * 22 21 19 28 28 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 31 31 H 1.08997 * 109.46872 * 304.99946 * 4 2 1 32 32 H 1.08994 * 109.47319 * 64.99922 * 4 2 1 33 33 H 1.00901 * 111.00043 * 56.04169 * 5 4 2 34 34 H 1.09002 * 109.47134 * 300.00065 * 6 5 4 35 35 H 1.08996 * 109.47008 * 60.00256 * 6 5 4 36 36 H 0.97002 * 119.99759 * 359.97438 * 9 7 6 37 37 H 0.96996 * 119.99662 * 180.02562 * 13 12 10 38 38 H 0.97000 * 120.00580 * 95.00360 * 18 2 1 39 39 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 40 40 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 41 41 H 1.09001 * 112.49742 * 45.21245 * 22 21 19 42 42 H 1.08999 * 113.14820 * 327.11218 * 23 22 21 43 43 H 1.09002 * 113.14825 * 96.59441 * 23 22 21 44 44 H 1.08995 * 113.14633 * 263.40778 * 27 22 21 45 45 H 1.09000 * 113.14629 * 32.88437 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5040 -0.8265 -1.1906 6 6 4.0302 -1.5155 -2.3765 7 6 5.5316 -1.6051 -2.2805 8 8 6.1065 -1.1402 -1.3191 9 7 6.2352 -2.2018 -3.2630 10 6 7.6010 -2.2828 -3.1760 11 1 8.1131 -1.8688 -2.3199 12 6 8.3264 -2.8984 -4.1886 13 7 9.6356 -2.9765 -4.1050 14 14 7.4408 -3.6150 -5.6690 15 1 7.3216 -2.5774 -6.7246 16 1 8.2111 -4.7704 -6.1952 17 1 6.0854 -4.0670 -5.2640 18 7 2.0184 -0.6908 1.1960 19 6 2.1472 -0.0185 2.3570 20 8 1.8583 1.1582 2.4118 21 6 2.6437 -0.7305 3.5889 22 6 2.6899 0.2511 4.7616 23 6 3.9809 1.0716 4.8089 24 16 3.8800 1.1195 6.6197 25 8 2.9600 2.0934 7.0934 26 8 5.1341 0.8878 7.2464 27 6 3.0676 -0.4130 6.0877 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 1.6054 -1.7196 -1.2954 32 1 1.7517 -0.1581 -2.1370 33 1 3.7996 -1.2882 -0.3436 34 1 3.6094 -2.5196 -2.4299 35 1 3.7557 -0.9584 -3.2721 36 1 5.7753 -2.5739 -4.0317 37 1 10.1420 -3.4059 -4.8121 38 1 2.2492 -1.6319 1.1524 39 1 1.9698 -1.5528 3.8298 40 1 3.6437 -1.1227 3.4038 41 1 1.7900 0.8625 4.8295 42 1 4.8498 0.5249 4.4425 43 1 3.8812 2.0544 4.3481 44 1 2.2029 -0.6738 6.6979 45 1 3.7604 -1.2459 5.9678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268652160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:50:38 Heat of formation + Delta-G solvation = -152.590101 kcal Electronic energy + Delta-G solvation = -27895.431361 eV Core-core repulsion = 23653.745540 eV Total energy + Delta-G solvation = -4241.685821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.00908 -40.27371 -38.53560 -38.17901 -37.41094 -36.99337 -36.05100 -35.06504 -33.73639 -32.43247 -29.71119 -29.08582 -27.50996 -26.62247 -24.56388 -23.17347 -21.65010 -21.29191 -21.14230 -20.26804 -19.76415 -18.46603 -17.75463 -17.50313 -17.41464 -17.10353 -17.00251 -16.81083 -16.51924 -16.35169 -15.75678 -15.60654 -15.31377 -14.96210 -14.76761 -14.46301 -14.21150 -14.13777 -13.94709 -13.90012 -13.49219 -13.30135 -13.25740 -13.16265 -13.13574 -13.03622 -12.80588 -12.61574 -12.40445 -12.25659 -12.09432 -11.98015 -11.89973 -11.53191 -11.50931 -11.19363 -10.77335 -10.44817 -10.24589 -10.03824 -9.31301 -8.40916 -6.02061 -0.75474 1.13369 1.30374 1.36837 1.45474 1.73468 1.96422 2.23703 2.25109 2.71711 2.79839 3.10869 3.15671 3.26140 3.39840 3.66337 3.87263 3.96626 4.09835 4.14160 4.23666 4.31229 4.36860 4.42532 4.45225 4.57826 4.58934 4.69368 4.71061 4.77420 4.79842 4.83722 4.96085 5.12258 5.17914 5.29654 5.52789 5.59460 5.89919 6.03387 6.38838 6.59700 6.60450 6.88731 7.33924 7.40436 7.97219 8.76742 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012166 B = 0.002113 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.954393 B =13247.855909 C =15186.829181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.144 3.856 3 H 0.061 0.939 4 C 0.057 3.943 5 N -0.692 5.692 6 C 0.062 3.938 7 C 0.446 3.554 8 O -0.615 6.615 9 N -0.591 5.591 10 C -0.328 4.328 11 H 0.054 0.946 12 C -0.017 4.017 13 N -0.935 5.935 14 Si 0.966 3.034 15 H -0.259 1.259 16 H -0.276 1.276 17 H -0.227 1.227 18 N -0.717 5.717 19 C 0.508 3.492 20 O -0.583 6.583 21 C -0.119 4.119 22 C -0.061 4.061 23 C -0.602 4.602 24 S 2.421 3.579 25 O -0.955 6.955 26 O -0.967 6.967 27 C -0.563 4.563 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.345 0.655 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.411 0.589 39 H 0.138 0.862 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.154 0.846 43 H 0.115 0.885 44 H 0.153 0.847 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.374 -2.292 12.230 27.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.039 3.961 3 H 0.080 0.920 4 C -0.072 4.072 5 N -0.325 5.325 6 C -0.070 4.070 7 C 0.234 3.766 8 O -0.500 6.500 9 N -0.232 5.232 10 C -0.458 4.458 11 H 0.072 0.928 12 C -0.216 4.216 13 N -0.576 5.576 14 Si 0.786 3.214 15 H -0.184 1.184 16 H -0.202 1.202 17 H -0.150 1.150 18 N -0.370 5.370 19 C 0.296 3.704 20 O -0.463 6.463 21 C -0.159 4.159 22 C -0.082 4.082 23 C -0.731 4.731 24 S 2.607 3.393 25 O -0.953 6.953 26 O -0.964 6.964 27 C -0.694 4.694 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.164 0.836 34 H 0.102 0.898 35 H 0.132 0.868 36 H 0.226 0.774 37 H 0.088 0.912 38 H 0.247 0.753 39 H 0.155 0.845 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.172 0.828 43 H 0.133 0.867 44 H 0.171 0.829 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -23.572 0.113 13.573 27.201 hybrid contribution 0.166 -1.791 -1.667 2.452 sum -23.406 -1.678 11.906 26.314 Atomic orbital electron populations 1.22050 0.93297 1.03149 1.02503 1.20949 0.94628 0.96835 0.83709 0.92035 1.22352 0.85965 1.00704 0.98147 1.59967 1.10445 1.57797 1.04312 1.21648 0.89145 0.99935 0.96267 1.21064 0.90942 0.81221 0.83334 1.90550 1.73007 1.51592 1.34844 1.42031 1.06089 1.53731 1.21380 1.18992 0.81992 1.37336 1.07453 0.92798 1.26152 0.96201 0.97365 1.01839 1.69811 1.07569 1.44441 1.35780 0.85348 0.79805 0.78724 0.77510 1.18390 1.20155 1.15028 1.46004 1.67054 1.14484 1.09441 1.21203 0.76435 0.87028 0.85727 1.90689 1.51825 1.17934 1.85833 1.21626 1.05768 0.98909 0.89643 1.21267 0.96984 0.96012 0.93957 1.31173 1.06013 1.09299 1.26643 1.07855 0.74625 0.79234 0.77569 1.93658 1.64157 1.58145 1.79315 1.93593 1.42205 1.85515 1.75081 1.30827 1.15067 1.19400 1.04149 0.90353 0.90609 0.93598 0.91886 0.88457 0.83586 0.89838 0.86812 0.77413 0.91175 0.75299 0.84458 0.86364 0.86992 0.82785 0.86675 0.82911 0.81133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.48 71.98 0.68 -1.35 16 2 C 0.14 2.55 2.88 44.99 0.13 2.68 16 3 H 0.06 1.56 7.58 -2.38 -0.02 1.54 16 4 C 0.06 0.91 5.30 86.31 0.46 1.37 16 5 N -0.69 -17.59 6.12 -517.93 -3.17 -20.75 16 6 C 0.06 1.66 6.17 85.56 0.53 2.19 16 7 C 0.45 19.02 7.82 87.66 0.69 19.71 16 8 O -0.62 -32.88 15.78 -3.06 -0.05 -32.93 16 9 N -0.59 -26.61 5.09 -306.99 -1.56 -28.17 16 10 C -0.33 -18.81 10.16 84.04 0.85 -17.95 16 11 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 12 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 13 N -0.94 -55.70 13.96 21.66 0.30 -55.40 16 14 Si 0.97 37.46 27.74 68.60 1.90 39.37 16 15 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 16 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 17 H -0.23 -7.17 6.52 99.48 0.65 -6.52 16 18 N -0.72 -11.33 4.36 -442.52 -1.93 -13.25 16 19 C 0.51 9.78 7.79 87.66 0.68 10.46 16 20 O -0.58 -16.43 15.44 -3.04 -0.05 -16.47 16 21 C -0.12 -1.27 5.48 29.85 0.16 -1.10 16 22 C -0.06 -0.74 2.80 -10.76 -0.03 -0.77 16 23 C -0.60 -8.63 7.49 72.00 0.54 -8.09 16 24 S 2.42 33.44 7.55 -56.49 -0.43 33.01 16 25 O -0.96 -20.56 18.18 -127.88 -2.32 -22.89 16 26 O -0.97 -20.69 18.18 -127.88 -2.32 -23.01 16 27 C -0.56 -3.36 7.50 72.00 0.54 -2.82 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.34 9.10 7.28 -89.69 -0.65 8.44 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.39 14.29 5.76 -92.71 -0.53 13.76 16 37 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 38 H 0.41 4.27 8.15 -92.71 -0.76 3.51 16 39 H 0.14 0.52 8.14 -2.38 -0.02 0.50 16 40 H 0.12 1.02 7.89 -2.39 -0.02 1.00 16 41 H 0.11 1.62 7.71 -2.39 -0.02 1.61 16 42 H 0.15 1.89 7.94 -2.39 -0.02 1.87 16 43 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.15 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.17 0.32 8.12 -2.39 -0.02 0.30 16 Total: -1.00 -95.82 389.02 -4.89 -100.71 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: -0.96 Total: 35.94 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 5.70 Total: 3.85 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -6.36 Total: -117.58 kcal Atomic # 8 Polarization: -90.56 SS G_CDS: -4.74 Total: -95.30 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 1.90 Total: 39.37 kcal Atomic # 16 Polarization: 33.44 SS G_CDS: -0.43 Total: 33.01 kcal Total: -95.82 -4.89 -100.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268652160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.883 kcal (2) G-P(sol) polarization free energy of solvation -95.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds