Wall clock time and date at job start Wed Apr 1 2020 06:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46904 * 111.00029 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46800 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00338 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99855 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00193 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00238 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00205 * 180.02562 * 11 10 8 14 14 N 1.31410 * 120.00302 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99816 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46776 * 90.00420 * 15 13 11 17 17 H 1.48495 * 109.47232 * 210.00549 * 15 13 11 18 18 H 1.48502 * 109.46976 * 330.00692 * 15 13 11 19 19 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 20 20 C 1.34773 * 120.00306 * 84.99801 * 19 2 1 21 21 O 1.21292 * 119.99815 * 0.02562 * 20 19 2 22 22 C 1.50694 * 120.00409 * 179.97438 * 20 19 2 23 23 C 1.53042 * 113.15561 * 280.37717 * 22 20 19 24 24 S 1.81427 * 89.89314 * 211.84997 * 23 22 20 25 25 O 1.42094 * 112.75330 * 280.47370 * 24 23 22 26 26 O 1.42098 * 112.75412 * 136.72525 * 24 23 22 27 27 C 1.53043 * 113.15622 * 179.97438 * 22 20 19 28 28 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 30 30 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 31 31 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 1.00902 * 111.00582 * 303.95797 * 6 5 4 36 36 H 1.08995 * 109.47167 * 300.00240 * 7 6 5 37 37 H 1.09003 * 109.46442 * 60.00214 * 7 6 5 38 38 H 0.97000 * 119.99567 * 0.02562 * 10 8 7 39 39 H 0.96996 * 120.00205 * 179.97438 * 14 13 11 40 40 H 0.97003 * 120.00235 * 265.00555 * 19 2 1 41 41 H 1.09007 * 112.49734 * 50.21620 * 22 20 19 42 42 H 1.09003 * 113.14403 * 327.11100 * 23 22 20 43 43 H 1.08999 * 113.15052 * 96.59124 * 23 22 20 44 44 H 1.08996 * 113.15244 * 263.41066 * 27 22 20 45 45 H 1.09000 * 113.14300 * 32.89381 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0545 -1.3056 2.5131 7 6 5.5181 -1.2231 2.6080 8 6 5.9824 -1.9431 3.8477 9 8 5.1738 -2.4732 4.5799 10 7 7.2964 -1.9979 4.1429 11 6 7.7189 -2.6534 5.2704 12 1 6.9989 -3.1255 5.9224 13 6 9.0735 -2.7095 5.5750 14 7 9.4785 -3.3382 6.6555 15 14 10.3189 -1.8923 4.4476 16 1 10.5333 -0.4885 4.8819 17 1 11.6048 -2.6322 4.5117 18 1 9.8084 -1.9066 3.0532 19 7 2.0183 -0.6905 -1.1963 20 6 2.1470 -0.0181 -2.3572 21 8 1.8589 1.1589 -2.4114 22 6 2.6498 -0.7281 -3.5876 23 6 4.1713 -0.8919 -3.6083 24 16 4.1562 -0.7703 -5.4185 25 8 3.7761 -1.9862 -6.0478 26 8 5.1969 0.0556 -5.9225 27 6 2.7340 0.1817 -4.8153 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.7516 -1.7716 1.2053 32 1 1.6054 -0.2620 2.1368 33 1 3.8532 0.4368 1.3572 34 1 3.9994 -1.0729 0.4257 35 1 3.6167 -0.9402 3.3456 36 1 5.9659 -1.6874 1.7294 37 1 5.8203 -0.1771 2.6601 38 1 7.9430 -1.5736 3.5575 39 1 10.4241 -3.3777 6.8679 40 1 2.2489 -1.6317 -1.1529 41 1 2.1153 -1.6585 -3.7799 42 1 4.6976 -0.0671 -3.1278 43 1 4.5024 -1.8655 -3.2471 44 1 1.8618 0.1071 -5.4646 45 1 2.9831 1.2135 -4.5676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272804263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:40:09 Heat of formation + Delta-G solvation = -116.560671 kcal Electronic energy + Delta-G solvation = -27747.890142 eV Core-core repulsion = 23507.766674 eV Total energy + Delta-G solvation = -4240.123468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -40.61782 -38.58218 -37.93401 -37.48122 -36.65682 -36.14997 -35.16271 -33.93131 -31.97795 -31.67298 -29.46689 -27.26735 -26.49072 -25.27321 -23.93628 -22.34853 -21.24016 -20.75781 -19.42496 -19.39061 -18.46385 -18.24011 -17.19621 -16.86889 -16.65458 -16.21511 -16.04105 -15.73387 -15.69820 -14.94514 -14.81165 -14.40311 -14.35509 -13.99387 -13.84675 -13.67912 -13.64038 -13.05779 -12.92739 -12.80318 -12.78356 -12.55750 -12.50961 -12.45009 -12.20515 -12.17270 -11.77938 -11.58317 -11.42780 -11.40977 -11.19846 -11.07351 -10.96321 -10.62893 -10.23427 -10.01111 -9.61290 -9.52019 -8.65481 -8.25712 -8.20136 -6.34620 -3.86316 -0.46599 1.35400 2.10267 2.64017 2.99483 3.03796 3.08296 3.12479 3.45024 3.50746 3.69101 3.89722 3.93417 4.06957 4.24825 4.39147 4.54933 4.62295 4.66021 4.75363 4.79661 4.86871 5.08614 5.13138 5.17444 5.21091 5.27581 5.36893 5.42758 5.50175 5.57615 5.73889 5.75038 5.81875 5.87060 5.94972 6.11774 7.00148 7.03883 7.48401 7.54376 7.74149 8.10446 8.55729 8.91082 9.38436 9.78163 10.78421 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010471 B = 0.002159 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.344846 B =12966.291579 C =15131.422263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.089 0.911 4 C -0.126 4.126 5 C 0.059 3.941 6 N -0.669 5.669 7 C 0.048 3.952 8 C 0.449 3.551 9 O -0.565 6.565 10 N -0.590 5.590 11 C -0.306 4.306 12 H 0.120 0.880 13 C 0.042 3.958 14 N -0.880 5.880 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 N -0.718 5.718 20 C 0.539 3.461 21 O -0.531 6.531 22 C -0.097 4.097 23 C -0.596 4.596 24 S 2.418 3.582 25 O -0.910 6.910 26 O -0.919 6.919 27 C -0.581 4.581 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.351 0.649 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.370 0.630 39 H 0.274 0.726 40 H 0.404 0.596 41 H 0.137 0.863 42 H 0.149 0.851 43 H 0.136 0.864 44 H 0.130 0.870 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.855 7.749 -24.634 29.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.071 4.071 6 N -0.302 5.302 7 C -0.085 4.085 8 C 0.235 3.765 9 O -0.447 6.447 10 N -0.229 5.229 11 C -0.435 4.435 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.520 5.520 15 Si 0.706 3.294 16 H -0.196 1.196 17 H -0.201 1.201 18 H -0.195 1.195 19 N -0.370 5.370 20 C 0.322 3.678 21 O -0.407 6.407 22 C -0.120 4.120 23 C -0.724 4.724 24 S 2.598 3.402 25 O -0.907 6.907 26 O -0.916 6.916 27 C -0.709 4.709 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.171 0.829 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.239 0.761 41 H 0.154 0.846 42 H 0.168 0.832 43 H 0.155 0.845 44 H 0.148 0.852 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.826 7.212 -25.302 30.199 hybrid contribution 0.818 1.295 0.575 1.636 sum -14.008 8.507 -24.728 29.665 Atomic orbital electron populations 1.22165 0.94851 1.02420 1.02681 1.21029 0.94198 0.97536 0.83473 0.89274 1.21886 0.95581 1.02147 0.96860 1.21970 0.94597 0.96160 0.94378 1.60066 1.04719 1.60009 1.05413 1.21698 0.89278 0.98756 0.98734 1.19695 0.82962 0.85910 0.87978 1.90564 1.52990 1.49298 1.51848 1.42212 1.05974 1.50548 1.24203 1.19429 0.93521 1.30553 0.99965 0.86272 1.25047 0.97000 0.97429 0.96682 1.69618 1.16331 1.41538 1.24545 0.86668 0.81950 0.80185 0.80547 1.19642 1.20119 1.19502 1.46107 1.66928 1.14404 1.09545 1.19684 0.77358 0.86959 0.83751 1.90727 1.49623 1.15656 1.84708 1.21599 0.95234 1.00499 0.94716 1.30997 1.00198 1.12272 1.28910 1.08245 0.77732 0.76602 0.77603 1.93740 1.82760 1.41818 1.72361 1.93673 1.52565 1.67330 1.77988 1.30896 1.21363 1.13285 1.05360 0.92172 0.91309 0.92158 0.90019 0.89996 0.95492 0.91169 0.82944 0.89597 0.93788 0.79690 0.91568 0.76071 0.84562 0.83244 0.84550 0.85164 0.82707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.48 37.16 0.35 -0.76 16 2 C 0.14 1.05 2.57 -67.93 -0.17 0.87 16 3 H 0.09 0.80 7.58 -51.93 -0.39 0.41 16 4 C -0.13 -0.99 5.01 -26.74 -0.13 -1.13 16 5 C 0.06 0.58 5.57 -3.83 -0.02 0.56 16 6 N -0.67 -9.47 6.12 -115.06 -0.70 -10.17 16 7 C 0.05 0.76 6.17 -4.98 -0.03 0.73 16 8 C 0.45 9.94 7.82 -10.99 -0.09 9.85 16 9 O -0.57 -14.88 15.78 5.55 0.09 -14.79 16 10 N -0.59 -13.81 5.09 -10.97 -0.06 -13.87 16 11 C -0.31 -8.56 10.16 -14.94 -0.15 -8.71 16 12 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 13 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 14 N -0.88 -25.50 13.96 55.50 0.77 -24.72 16 15 Si 0.88 19.11 27.74 -169.99 -4.71 14.39 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 19 N -0.72 -4.56 4.53 -53.81 -0.24 -4.80 16 20 C 0.54 4.11 7.29 -10.99 -0.08 4.03 16 21 O -0.53 -6.04 15.61 5.55 0.09 -5.95 16 22 C -0.10 -0.43 3.82 -91.73 -0.35 -0.78 16 23 C -0.60 -1.98 7.48 37.18 0.28 -1.70 16 24 S 2.42 10.39 7.55 -107.50 -0.81 9.57 16 25 O -0.91 -6.60 18.18 -57.30 -1.04 -7.64 16 26 O -0.92 -7.63 18.18 -57.30 -1.04 -8.67 16 27 C -0.58 -2.32 7.18 37.18 0.27 -2.05 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.65 7.75 -51.93 -0.40 0.24 16 35 H 0.35 5.19 8.43 -39.29 -0.33 4.86 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.37 7.58 5.76 -40.82 -0.24 7.35 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.40 1.77 8.60 -40.82 -0.35 1.42 16 41 H 0.14 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.15 0.52 8.11 -51.93 -0.42 0.10 16 43 H 0.14 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.15 0.76 7.57 -51.93 -0.39 0.36 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -40.07 390.60 -8.74 -48.81 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -6.73 Total: 10.03 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -0.23 Total: 1.93 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.23 Total: -53.56 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -1.91 Total: -37.06 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.39 kcal Atomic # 16 Polarization: 10.39 SS G_CDS: -0.81 Total: 9.57 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -40.07 -8.74 -48.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272804263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.747 kcal (2) G-P(sol) polarization free energy of solvation -40.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds