Wall clock time and date at job start Wed Apr 1 2020 06:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46904 * 111.00029 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46800 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00338 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99855 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00193 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00238 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00205 * 180.02562 * 11 10 8 14 14 N 1.31410 * 120.00302 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99816 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46776 * 90.00420 * 15 13 11 17 17 H 1.48495 * 109.47232 * 210.00549 * 15 13 11 18 18 H 1.48502 * 109.46976 * 330.00692 * 15 13 11 19 19 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 20 20 C 1.34773 * 120.00306 * 84.99801 * 19 2 1 21 21 O 1.21292 * 119.99815 * 0.02562 * 20 19 2 22 22 C 1.50694 * 120.00409 * 179.97438 * 20 19 2 23 23 C 1.53042 * 113.15561 * 280.37717 * 22 20 19 24 24 S 1.81427 * 89.89314 * 211.84997 * 23 22 20 25 25 O 1.42094 * 112.75330 * 280.47370 * 24 23 22 26 26 O 1.42098 * 112.75412 * 136.72525 * 24 23 22 27 27 C 1.53043 * 113.15622 * 179.97438 * 22 20 19 28 28 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 30 30 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 31 31 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 1.00902 * 111.00582 * 303.95797 * 6 5 4 36 36 H 1.08995 * 109.47167 * 300.00240 * 7 6 5 37 37 H 1.09003 * 109.46442 * 60.00214 * 7 6 5 38 38 H 0.97000 * 119.99567 * 0.02562 * 10 8 7 39 39 H 0.96996 * 120.00205 * 179.97438 * 14 13 11 40 40 H 0.97003 * 120.00235 * 265.00555 * 19 2 1 41 41 H 1.09007 * 112.49734 * 50.21620 * 22 20 19 42 42 H 1.09003 * 113.14403 * 327.11100 * 23 22 20 43 43 H 1.08999 * 113.15052 * 96.59124 * 23 22 20 44 44 H 1.08996 * 113.15244 * 263.41066 * 27 22 20 45 45 H 1.09000 * 113.14300 * 32.89381 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0545 -1.3056 2.5131 7 6 5.5181 -1.2231 2.6080 8 6 5.9824 -1.9431 3.8477 9 8 5.1738 -2.4732 4.5799 10 7 7.2964 -1.9979 4.1429 11 6 7.7189 -2.6534 5.2704 12 1 6.9989 -3.1255 5.9224 13 6 9.0735 -2.7095 5.5750 14 7 9.4785 -3.3382 6.6555 15 14 10.3189 -1.8923 4.4476 16 1 10.5333 -0.4885 4.8819 17 1 11.6048 -2.6322 4.5117 18 1 9.8084 -1.9066 3.0532 19 7 2.0183 -0.6905 -1.1963 20 6 2.1470 -0.0181 -2.3572 21 8 1.8589 1.1589 -2.4114 22 6 2.6498 -0.7281 -3.5876 23 6 4.1713 -0.8919 -3.6083 24 16 4.1562 -0.7703 -5.4185 25 8 3.7761 -1.9862 -6.0478 26 8 5.1969 0.0556 -5.9225 27 6 2.7340 0.1817 -4.8153 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.7516 -1.7716 1.2053 32 1 1.6054 -0.2620 2.1368 33 1 3.8532 0.4368 1.3572 34 1 3.9994 -1.0729 0.4257 35 1 3.6167 -0.9402 3.3456 36 1 5.9659 -1.6874 1.7294 37 1 5.8203 -0.1771 2.6601 38 1 7.9430 -1.5736 3.5575 39 1 10.4241 -3.3777 6.8679 40 1 2.2489 -1.6317 -1.1529 41 1 2.1153 -1.6585 -3.7799 42 1 4.6976 -0.0671 -3.1278 43 1 4.5024 -1.8655 -3.2471 44 1 1.8618 0.1071 -5.4646 45 1 2.9831 1.2135 -4.5676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272804263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:40:08 Heat of formation + Delta-G solvation = -153.063987 kcal Electronic energy + Delta-G solvation = -27749.473044 eV Core-core repulsion = 23507.766674 eV Total energy + Delta-G solvation = -4241.706370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.17719 -40.30083 -38.43901 -38.16668 -37.17138 -36.71774 -36.24010 -35.72469 -33.75351 -32.62489 -30.37449 -27.88848 -27.56033 -25.94507 -25.34714 -23.20722 -21.86647 -21.30630 -21.23309 -20.25535 -19.76080 -18.78977 -17.82308 -17.66448 -17.28944 -17.14470 -17.00532 -16.65349 -16.52699 -16.20988 -15.74617 -15.44548 -15.26215 -14.99213 -14.89298 -14.62935 -14.50534 -14.09948 -14.03478 -13.87101 -13.57783 -13.32363 -13.29572 -13.26454 -12.97515 -12.88687 -12.80726 -12.53122 -12.41591 -12.20587 -12.09406 -12.00840 -11.97271 -11.75574 -11.51462 -11.30935 -10.81922 -10.44610 -10.25267 -10.10247 -9.33857 -8.41417 -6.02432 -0.83399 1.02063 1.30444 1.35699 1.44887 1.58103 1.95424 2.15446 2.23003 2.70814 2.74963 3.08934 3.15155 3.16898 3.36316 3.57384 3.89538 3.98708 4.00234 4.10367 4.11739 4.20629 4.29971 4.41039 4.50173 4.50793 4.54292 4.62245 4.70316 4.84610 4.84822 4.91669 4.98258 5.08661 5.22178 5.32755 5.52496 5.55444 5.90517 6.04775 6.37827 6.55470 6.59490 6.87988 7.23084 7.39642 7.96066 8.76180 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010471 B = 0.002159 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.344846 B =12966.291579 C =15131.422263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.148 3.852 3 H 0.073 0.927 4 C -0.117 4.117 5 C 0.061 3.939 6 N -0.685 5.685 7 C 0.062 3.938 8 C 0.448 3.552 9 O -0.614 6.614 10 N -0.591 5.591 11 C -0.329 4.329 12 H 0.055 0.945 13 C -0.016 4.016 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.258 1.258 17 H -0.276 1.276 18 H -0.230 1.230 19 N -0.709 5.709 20 C 0.536 3.464 21 O -0.574 6.574 22 C -0.100 4.100 23 C -0.583 4.583 24 S 2.448 3.552 25 O -0.938 6.938 26 O -0.962 6.962 27 C -0.579 4.579 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.084 0.916 35 H 0.344 0.656 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.417 0.583 41 H 0.166 0.834 42 H 0.151 0.849 43 H 0.162 0.838 44 H 0.145 0.855 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.391 8.565 -27.245 31.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.043 3.957 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.068 4.068 6 N -0.317 5.317 7 C -0.071 4.071 8 C 0.236 3.764 9 O -0.499 6.499 10 N -0.233 5.233 11 C -0.458 4.458 12 H 0.073 0.927 13 C -0.214 4.214 14 N -0.575 5.575 15 Si 0.785 3.215 16 H -0.183 1.183 17 H -0.201 1.201 18 H -0.153 1.153 19 N -0.362 5.362 20 C 0.321 3.679 21 O -0.453 6.453 22 C -0.123 4.123 23 C -0.712 4.712 24 S 2.632 3.368 25 O -0.935 6.935 26 O -0.959 6.959 27 C -0.708 4.708 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.103 0.897 35 H 0.162 0.838 36 H 0.133 0.867 37 H 0.091 0.909 38 H 0.225 0.775 39 H 0.089 0.911 40 H 0.254 0.746 41 H 0.184 0.816 42 H 0.170 0.830 43 H 0.180 0.820 44 H 0.164 0.836 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.370 8.009 -27.967 32.447 hybrid contribution 0.502 1.004 1.508 1.880 sum -13.868 9.013 -26.459 31.203 Atomic orbital electron populations 1.22118 0.94447 1.02873 1.02263 1.20874 0.94433 0.96742 0.83647 0.90838 1.21785 0.94296 1.02335 0.97082 1.22057 0.95692 0.96087 0.92916 1.60095 1.03789 1.61325 1.06529 1.21629 0.90441 0.99414 0.95595 1.21018 0.81970 0.84366 0.89083 1.90543 1.54249 1.51060 1.54033 1.42047 1.07113 1.50787 1.23354 1.19003 0.93176 1.32170 1.01468 0.92663 1.26129 0.99147 0.97621 0.98540 1.69802 1.17302 1.43286 1.27114 0.85365 0.77667 0.78882 0.79598 1.18267 1.20081 1.15284 1.46059 1.66219 1.14935 1.08962 1.20155 0.76608 0.86518 0.84588 1.90717 1.51566 1.17608 1.85403 1.21792 0.96095 1.01357 0.93085 1.30922 0.99444 1.13896 1.26959 1.07223 0.76690 0.75277 0.77644 1.93698 1.83081 1.42999 1.73730 1.93612 1.54485 1.68344 1.79440 1.30888 1.21751 1.12756 1.05439 0.91239 0.90846 0.93498 0.89753 0.89995 0.95041 0.89721 0.83759 0.86697 0.90910 0.77466 0.91144 0.74608 0.81614 0.83041 0.82001 0.83636 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.48 71.98 0.68 -1.24 16 2 C 0.15 1.87 2.57 44.99 0.12 1.99 16 3 H 0.07 1.21 7.58 -2.39 -0.02 1.19 16 4 C -0.12 -1.55 5.01 30.59 0.15 -1.39 16 5 C 0.06 1.02 5.57 86.30 0.48 1.50 16 6 N -0.69 -17.66 6.12 -517.93 -3.17 -20.83 16 7 C 0.06 1.73 6.17 85.55 0.53 2.26 16 8 C 0.45 19.46 7.82 87.65 0.69 20.15 16 9 O -0.61 -33.15 15.78 -3.06 -0.05 -33.20 16 10 N -0.59 -27.14 5.09 -306.99 -1.56 -28.70 16 11 C -0.33 -19.00 10.16 84.04 0.85 -18.14 16 12 H 0.06 3.81 7.39 -2.91 -0.02 3.79 16 13 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 14 N -0.93 -55.84 13.96 21.66 0.30 -55.54 16 15 Si 0.96 38.01 27.74 68.60 1.90 39.91 16 16 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 17 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 18 H -0.23 -7.50 6.52 99.48 0.65 -6.85 16 19 N -0.71 -7.04 4.53 -442.55 -2.00 -9.04 16 20 C 0.54 6.95 7.29 87.66 0.64 7.59 16 21 O -0.57 -12.40 15.61 -3.07 -0.05 -12.45 16 22 C -0.10 -0.59 3.82 -11.51 -0.04 -0.64 16 23 C -0.58 -2.06 7.48 72.00 0.54 -1.52 16 24 S 2.45 17.33 7.55 -56.49 -0.43 16.91 16 25 O -0.94 -12.14 18.18 -127.88 -2.32 -14.46 16 26 O -0.96 -15.43 18.18 -127.88 -2.32 -17.75 16 27 C -0.58 -3.62 7.18 72.00 0.52 -3.10 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 1.18 7.75 -2.39 -0.02 1.16 16 35 H 0.34 9.71 8.43 -89.69 -0.76 8.95 16 36 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.39 14.67 5.76 -92.71 -0.53 14.14 16 39 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.42 2.12 8.60 -92.71 -0.80 1.32 16 41 H 0.17 0.00 8.14 -2.38 -0.02 -0.02 16 42 H 0.15 0.61 8.11 -2.39 -0.02 0.59 16 43 H 0.16 -0.21 8.14 -2.39 -0.02 -0.23 16 44 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.15 1.29 7.57 -2.39 -0.02 1.28 16 Total: -1.00 -92.64 390.60 -5.19 -97.83 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: -1.11 Total: 30.27 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 5.62 Total: 7.05 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -6.44 Total: -114.11 kcal Atomic # 8 Polarization: -73.11 SS G_CDS: -4.75 Total: -77.86 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 1.90 Total: 39.91 kcal Atomic # 16 Polarization: 17.33 SS G_CDS: -0.43 Total: 16.91 kcal Total: -92.64 -5.19 -97.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272804263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.233 kcal (2) G-P(sol) polarization free energy of solvation -92.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds