Wall clock time and date at job start Wed Apr 1 2020 06:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47248 * 2 1 4 4 C 1.53007 * 109.46800 * 240.00526 * 2 1 3 5 5 N 1.46898 * 109.46873 * 184.99967 * 4 2 1 6 6 C 1.46903 * 110.99849 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47398 * 179.97438 * 6 5 4 8 8 O 1.21297 * 119.99867 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00325 * 180.02562 * 7 6 5 10 10 C 1.37092 * 119.99974 * 179.97438 * 9 7 6 11 11 H 1.08000 * 120.00583 * 0.02562 * 10 9 7 12 12 C 1.38955 * 120.00110 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99820 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00230 * 179.72236 * 12 10 9 15 15 H 1.48506 * 109.46753 * 60.00578 * 14 12 10 16 16 H 1.48497 * 109.47201 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47346 * 300.00478 * 14 12 10 18 18 N 1.46495 * 109.47476 * 120.00611 * 2 1 3 19 19 C 1.34773 * 120.00352 * 274.99844 * 18 2 1 20 20 O 1.21286 * 119.99677 * 0.02562 * 19 18 2 21 21 C 1.50696 * 120.00817 * 179.97438 * 19 18 2 22 22 H 1.09004 * 109.64293 * 300.70838 * 21 19 18 23 23 C 1.53874 * 109.64951 * 180.27344 * 21 19 18 24 24 C 1.55055 * 106.61898 * 192.96894 * 23 21 19 25 25 S 1.83284 * 102.57029 * 42.43385 * 24 23 21 26 26 O 1.42103 * 109.35258 * 90.18313 * 25 24 23 27 27 O 1.42096 * 109.35107 * 223.38721 * 25 24 23 28 28 C 1.54164 * 109.64230 * 61.12792 * 21 19 18 29 29 H 1.08995 * 109.46918 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46853 * 299.99454 * 1 2 3 31 31 H 1.09000 * 109.46914 * 59.99356 * 1 2 3 32 32 H 1.09007 * 109.47030 * 64.99852 * 4 2 1 33 33 H 1.09001 * 109.46922 * 305.00221 * 4 2 1 34 34 H 1.00898 * 111.00544 * 56.04865 * 5 4 2 35 35 H 1.09005 * 109.47310 * 59.99621 * 6 5 4 36 36 H 1.08999 * 109.47201 * 300.00515 * 6 5 4 37 37 H 0.97005 * 119.99841 * 0.02562 * 9 7 6 38 38 H 0.97000 * 120.00377 * 179.97438 * 13 12 10 39 39 H 0.97008 * 119.99738 * 94.99383 * 18 2 1 40 40 H 1.08999 * 110.02854 * 312.25434 * 23 21 19 41 41 H 1.08996 * 110.02565 * 73.67954 * 23 21 19 42 42 H 1.08998 * 110.78448 * 160.70254 * 24 23 21 43 43 H 1.09000 * 110.78719 * 283.97171 * 24 23 21 44 44 H 1.09003 * 110.32268 * 266.66568 * 28 21 19 45 45 H 1.09001 * 110.32094 * 28.86283 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5040 -0.8266 -1.1906 6 6 4.0302 -1.5158 -2.3764 7 6 5.5316 -1.6043 -2.2811 8 8 6.1068 -1.1386 -1.3201 9 7 6.2353 -2.1999 -3.2642 10 6 7.6012 -2.2799 -3.1777 11 1 8.1133 -1.8661 -2.3216 12 6 8.3267 -2.8945 -4.1910 13 7 7.7036 -3.3986 -5.2324 14 14 10.1884 -2.9967 -4.0768 15 1 10.5687 -3.7507 -2.8553 16 1 10.7202 -3.6940 -5.2752 17 1 10.7562 -1.6262 -4.0095 18 7 2.0184 -0.6907 1.1960 19 6 2.1473 -0.0185 2.3571 20 8 1.8584 1.1581 2.4118 21 6 2.6491 -0.7291 3.5876 22 1 1.9850 -1.5594 3.8277 23 6 2.6962 0.2545 4.7700 24 6 3.5190 -0.4356 5.8884 25 16 4.9093 -1.1834 4.9572 26 8 5.9830 -0.2551 4.8879 27 8 5.1403 -2.5019 5.4341 28 6 4.0735 -1.2615 3.3339 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.7515 -0.1581 -2.1371 33 1 1.6053 -1.7197 -1.2954 34 1 3.7996 -1.2884 -0.3436 35 1 3.7556 -0.9587 -3.2722 36 1 3.6093 -2.5198 -2.4298 37 1 5.7754 -2.5713 -4.0333 38 1 8.2101 -3.8273 -5.9400 39 1 2.2491 -1.6319 1.1523 40 1 3.1833 1.1809 4.4658 41 1 1.6862 0.4618 5.1234 42 1 3.8848 0.2971 6.6077 43 1 2.9266 -1.2027 6.3872 44 1 4.0351 -2.2915 2.9792 45 1 4.5903 -0.6304 2.6109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274830832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:51:19 Heat of formation + Delta-G solvation = -144.051722 kcal Electronic energy + Delta-G solvation = -28652.148907 eV Core-core repulsion = 24410.833337 eV Total energy + Delta-G solvation = -4241.315569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.44808 -38.41346 -37.31109 -37.16312 -36.29222 -35.93497 -34.37550 -33.71806 -31.68393 -31.23536 -30.03462 -27.68774 -26.28262 -25.09840 -23.55379 -23.05681 -21.08818 -20.51482 -19.31724 -19.11615 -18.06849 -17.81721 -17.25781 -16.80898 -16.33791 -15.99632 -15.90982 -15.44009 -15.30285 -14.77404 -14.54651 -14.49554 -14.32725 -14.00352 -13.88272 -13.53354 -13.17431 -13.05152 -12.70998 -12.66558 -12.60789 -12.40025 -12.28177 -12.24956 -12.02251 -11.83342 -11.67908 -11.63526 -11.50803 -11.19621 -11.13375 -11.01983 -10.71375 -10.45717 -10.24097 -10.00939 -9.53190 -9.34750 -8.54120 -8.17389 -8.00136 -6.44981 -3.85994 -0.27812 2.12886 2.37743 2.79157 3.19038 3.25024 3.29667 3.29888 3.69784 3.85248 3.94103 3.98158 4.03027 4.18893 4.23714 4.34929 4.47263 4.60683 4.75662 4.91322 5.01648 5.07899 5.09996 5.13929 5.22014 5.25336 5.32511 5.43940 5.44712 5.52171 5.57377 5.68806 5.81415 5.89126 5.95531 6.19766 6.25352 7.04889 7.18590 7.49562 7.52366 7.92473 8.02315 8.56931 9.14364 9.49859 10.00868 10.72522 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009546 B = 0.002855 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.613463 B = 9804.016076 C =12313.592254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.100 0.900 4 C 0.050 3.950 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.438 3.562 8 O -0.583 6.583 9 N -0.561 5.561 10 C -0.301 4.301 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.719 5.719 19 C 0.530 3.470 20 O -0.531 6.531 21 C -0.103 4.103 22 H 0.118 0.882 23 C -0.102 4.102 24 C -0.590 4.590 25 S 2.397 3.603 26 O -0.927 6.927 27 O -0.936 6.936 28 C -0.598 4.598 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.033 0.967 34 H 0.346 0.654 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.399 0.601 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.148 0.852 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.055 2.022 15.879 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.118 0.882 4 C -0.080 4.080 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.223 3.777 8 O -0.467 6.467 9 N -0.198 5.198 10 C -0.431 4.431 11 H 0.121 0.879 12 C -0.178 4.178 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.198 1.198 18 N -0.370 5.370 19 C 0.315 3.685 20 O -0.407 6.407 21 C -0.125 4.125 22 H 0.136 0.864 23 C -0.141 4.141 24 C -0.720 4.720 25 S 2.579 3.421 26 O -0.924 6.924 27 O -0.934 6.934 28 C -0.726 4.726 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.166 0.834 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.233 0.767 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.159 0.841 43 H 0.156 0.844 44 H 0.166 0.834 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.756 3.439 16.388 23.688 hybrid contribution -0.321 -1.615 -0.813 1.836 sum -17.076 1.825 15.574 23.184 Atomic orbital electron populations 1.22146 0.94888 1.02112 1.02855 1.21095 0.93504 0.98595 0.82990 0.88215 1.22319 0.88884 0.99019 0.97827 1.60022 1.07432 1.57545 1.04975 1.21701 0.95260 0.96927 0.94410 1.19777 0.88015 0.84469 0.85421 1.90531 1.71074 1.51534 1.33600 1.41852 1.07426 1.50711 1.19802 1.19667 0.81484 1.35234 1.06689 0.87913 1.25267 1.00763 0.96648 0.95155 1.69601 1.36881 1.38445 1.09370 0.85913 0.82022 0.78688 0.77599 1.19842 1.20963 1.19815 1.45996 1.67184 1.14026 1.09793 1.20022 0.77309 0.87074 0.84125 1.90731 1.49657 1.15501 1.84817 1.21739 0.95547 1.00180 0.95051 0.86396 1.22051 1.03546 0.98548 0.89938 1.30688 1.18347 1.12909 1.10038 1.08943 0.77972 0.75905 0.79283 1.93662 1.49392 1.63978 1.85378 1.93625 1.84668 1.36680 1.78380 1.30669 1.06465 1.11697 1.23815 0.92512 0.91885 0.91266 0.89334 0.94937 0.83403 0.89418 0.93839 0.77468 0.91775 0.76679 0.88089 0.87912 0.84091 0.84369 0.83384 0.83032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.48 37.16 0.35 -0.90 16 2 C 0.14 1.39 2.88 -67.93 -0.20 1.19 16 3 H 0.10 1.23 7.58 -51.93 -0.39 0.84 16 4 C 0.05 0.51 5.30 -3.82 -0.02 0.49 16 5 N -0.67 -9.72 6.12 -115.05 -0.70 -10.42 16 6 C 0.05 0.81 6.17 -4.97 -0.03 0.78 16 7 C 0.44 10.01 7.82 -10.99 -0.09 9.93 16 8 O -0.58 -15.44 15.78 5.54 0.09 -15.36 16 9 N -0.56 -13.93 5.29 -10.96 -0.06 -13.99 16 10 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 11 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 13 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 14 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 N -0.72 -6.29 4.27 -53.81 -0.23 -6.52 16 19 C 0.53 5.19 6.96 -10.99 -0.08 5.11 16 20 O -0.53 -7.07 15.46 5.55 0.09 -6.98 16 21 C -0.10 -0.66 2.95 -90.71 -0.27 -0.93 16 22 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 23 C -0.10 -0.63 5.27 -25.19 -0.13 -0.76 16 24 C -0.59 -2.89 7.31 38.24 0.28 -2.61 16 25 S 2.40 20.57 6.10 -107.50 -0.66 19.92 16 26 O -0.93 -12.35 18.14 -57.71 -1.05 -13.40 16 27 O -0.94 -11.05 18.15 -57.71 -1.05 -12.09 16 28 C -0.60 -4.38 6.60 37.77 0.25 -4.13 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.35 5.04 7.28 -39.29 -0.29 4.75 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 38 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.40 2.69 8.10 -40.82 -0.33 2.36 16 40 H 0.10 0.77 7.72 -51.93 -0.40 0.37 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.14 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.14 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.15 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.15 1.39 7.88 -51.93 -0.41 0.98 16 LS Contribution 388.78 15.07 5.86 5.86 Total: -1.00 -39.21 388.78 -8.90 -48.11 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -6.73 Total: 12.20 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -0.17 Total: 0.24 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.27 Total: -54.49 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -1.92 Total: -47.83 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 20.57 SS G_CDS: -0.66 Total: 19.92 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -39.21 -8.90 -48.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274830832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.941 kcal (2) G-P(sol) polarization free energy of solvation -39.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds